Rh2CG040900

Signal peptidase complex catalytic subunit

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2C
OG0009052
Physical Location & Seq
Forward (+)
3277440 .. 3280472
3033 bp
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UTR
Exon/CDS
Intron
Rh2CG040900.1

Sequence Viewer

Length: 399 bp
ATGTTGATGACTGGGAGTGAGTCACCTGTGGTGGTTGTGCTCTCTGAAAGCATGGAACCTGGCTTTGCTAGGGGTGACATTTTGTTCTTGCATATGAGCAAGGATCCTATTCGTGCAGGAGAAATTGTCGTGTTTAACGTGGATGGACGTTCTATTCCAATTGTTCATCGAGTAATTAAGGTGCACGAGCGGAAAGATACTGGAGAAGATTATGTCCTCACAAAAGGAGACAATAATTCTGATGATGATAGAATCCTTTATGCTCCGGGCCAGCGTTGGTTGCAAAAACACCATATCATGGGGAGAGCTGCTGGGTATGTCTTTTATCTTGTTATACTTTGTTCTGAGCTGTTAGGTGAAGTTTCAATAGCAAGCTGTAACGTAGATGAACAACTGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03060 map03060
Pfam Domains
Protein Families
Peptidase_S24

Protein Analysis

132

Amino Acids

14.73

Weight (kDa)

5.26

Isoelectric Point (pI)

46.22

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Peptidase_S24 PF00717 5 - 67 3.6e-09 Peptidase S24-like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 298
AccBSI CCGCTC 1 cut(s) 190
AciI CCGC 1 cut(s) 190
AclWI GGATC 2 cut(s) 98, 111
AfiI CCNNNNNNNGG 1 cut(s) 298
AgsI TTSAA 1 cut(s) 366
AjnI CCWGG 1 cut(s) 58
AluBI AGCT 3 cut(s) 308, 349, 375
AluI AGCT 3 cut(s) 308, 349, 375
Alw21I GWGCWC 2 cut(s) 42, 186
Alw26I GTCTC 1 cut(s) 222
Alw44I GTGCAC 1 cut(s) 182
AlwI GGATC 2 cut(s) 98, 111
AoxI GGCC 1 cut(s) 268
ApaLI GTGCAC 1 cut(s) 182
ApeKI GCWGC 1 cut(s) 308
AspS9I GGNCC 1 cut(s) 268
AsuC2I CCSGG 1 cut(s) 267
AsuHPI GGTGA 3 cut(s) 15, 86, 368
BaeGI GKGCMC 1 cut(s) 186
BamHI GGATCC 1 cut(s) 103
BauI CACGAG 1 cut(s) 185
Bbv12I GWGCWC 2 cut(s) 42, 186
BbvI GCAGC 1 cut(s) 295
BccI CCATC 1 cut(s) 137
BciT130I CCWGG 1 cut(s) 60
BcnI CCSGG 1 cut(s) 267
BcoDI GTCTC 1 cut(s) 222
BfaI CTAG 1 cut(s) 69
BisI GCNGC 1 cut(s) 309
BlsI GCNGC 1 cut(s) 310
Bme1390I CCNGG 2 cut(s) 60, 267
BmgT120I GGNCC 1 cut(s) 268
BmiI GGNNCC 2 cut(s) 57, 105
BmrFI CCNGG 2 cut(s) 60, 267
BmrI ACTGGG 1 cut(s) 21
BmuI ACTGGG 1 cut(s) 21
BpmI CTGGAG 1 cut(s) 222
BpuMI CCSGG 1 cut(s) 267
BsaXI ACNNNNNCTCC 2 cut(s) 111, 141
Bsc4I CCNNNNNNNGG 1 cut(s) 298
Bse1I ACTGG 2 cut(s) 16, 205
BseBI CCWGG 1 cut(s) 60
BseGI GGATG 1 cut(s) 148
BseLI CCNNNNNNNGG 1 cut(s) 298
BseMII CTCAG 1 cut(s) 336
BseNI ACTGG 2 cut(s) 16, 205
BseSI GKGCMC 1 cut(s) 186
BseXI GCAGC 1 cut(s) 295
BseYI CCCAGC 1 cut(s) 311
BsgI GTGCAG 1 cut(s) 135
BshFI GGCC 1 cut(s) 270
BsiHKAI GWGCWC 2 cut(s) 42, 186
BsiSI CCGG 1 cut(s) 266
BslI CCNNNNNNNGG 1 cut(s) 298
BsmAI GTCTC 1 cut(s) 222
BsnI GGCC 1 cut(s) 270
Bsp1286I GDGCHC 2 cut(s) 42, 186
Bsp143I GATC 1 cut(s) 103
BspACI CCGC 1 cut(s) 190
BspANI GGCC 1 cut(s) 270
BspCNI CTCAG 1 cut(s) 337
BspLI GGNNCC 2 cut(s) 57, 105
BspPI GGATC 2 cut(s) 98, 111
BsrBI CCGCTC 1 cut(s) 190
BsrI ACTGG 2 cut(s) 16, 205
BssMI GATC 1 cut(s) 103
BssSI CACGAG 1 cut(s) 185
Bst2BI CACGAG 1 cut(s) 185
Bst2UI CCWGG 1 cut(s) 60
Bst4CI ACNGT 1 cut(s) 396
BstC8I GCNNGC 2 cut(s) 272, 373
BstDEI CTNAG 1 cut(s) 345
BstF5I GGATG 1 cut(s) 148
BstKTI GATC 1 cut(s) 106
BstMAI GTCTC 1 cut(s) 222
BstMBI GATC 1 cut(s) 103
BstMWI GCNNNNNNNGC 1 cut(s) 280
BstNI CCWGG 1 cut(s) 60
BstSCI CCNGG 2 cut(s) 58, 265
BstSLI GKGCMC 1 cut(s) 186
BstV1I GCAGC 1 cut(s) 295
BstX2I RGATCY 1 cut(s) 103
BstYI RGATCY 1 cut(s) 103
BsuRI GGCC 1 cut(s) 270
BtsCI GGATG 1 cut(s) 148
Cac8I GCNNGC 2 cut(s) 272, 373
Cfr13I GGNCC 1 cut(s) 268
CviAII CATG 2 cut(s) 52, 298
CviJI RGCY 5 cut(s) 63, 270, 308, 349, 375
CviKI_1 RGCY 5 cut(s) 63, 270, 308, 349, 375
DdeI CTNAG 1 cut(s) 345
DpnI GATC 1 cut(s) 105
DpnII GATC 1 cut(s) 103
EcoRII CCWGG 1 cut(s) 58
FaeI CATG 2 cut(s) 55, 301
FaiI YATR 9 cut(s) 53, 93, 95, 213, 261, 294, 299, 318, 335
FatI CATG 2 cut(s) 51, 297
FauNDI CATATG 1 cut(s) 93
Fnu4HI GCNGC 1 cut(s) 309
FokI GGATG 1 cut(s) 155
Fsp4HI GCNGC 1 cut(s) 309
FspBI CTAG 1 cut(s) 69
GluI GCNGC 1 cut(s) 309
GsaI CCCAGC 1 cut(s) 315
GsuI CTGGAG 1 cut(s) 222
HaeIII GGCC 1 cut(s) 270
HapII CCGG 1 cut(s) 266
Hin1II CATG 2 cut(s) 55, 301
HinfI GANTC 2 cut(s) 20, 252
HpaII CCGG 1 cut(s) 266
HphI GGTGA 3 cut(s) 15, 86, 368
Hpy166II GTNNAC 1 cut(s) 184
Hpy188I TCNGA 3 cut(s) 46, 241, 346
Hpy8I GTNNAC 1 cut(s) 184
HpyCH4III ACNGT 1 cut(s) 396
HpyCH4IV ACGT 3 cut(s) 138, 148, 381
HpyCH4V TGCA 4 cut(s) 91, 116, 184, 283
HpyF10VI GCNNNNNNNGC 1 cut(s) 280
HpyF3I CTNAG 1 cut(s) 345
HpySE526I ACGT 3 cut(s) 138, 148, 381
Hsp92II CATG 2 cut(s) 55, 301
Kzo9I GATC 1 cut(s) 103
LmnI GCTCC 1 cut(s) 268
LpnPI CCDG 8 cut(s) 39, 45, 72, 102, 186, 279, 284, 297
Lsp1109I GCAGC 1 cut(s) 295
MaeI CTAG 1 cut(s) 69
MaeII ACGT 3 cut(s) 138, 148, 381
MaeIII GTNAC 3 cut(s) 21, 74, 377
MalI GATC 1 cut(s) 105
MbiI CCGCTC 1 cut(s) 190
MboI GATC 1 cut(s) 103
MboII GAAGA 1 cut(s) 218
MfeI CAATTG 1 cut(s) 159
MflI RGATCY 1 cut(s) 103
MhlI GDGCHC 2 cut(s) 42, 186
MluCI AATT 4 cut(s) 123, 159, 174, 235
MlyI GAGTC 1 cut(s) 29
MnlI CCTC 1 cut(s) 227
MseI TTAA 2 cut(s) 135, 177
MspI CCGG 1 cut(s) 266
MspR9I CCNGG 2 cut(s) 60, 267
MunI CAATTG 1 cut(s) 159
MvaI CCWGG 1 cut(s) 60
MwoI GCNNNNNNNGC 1 cut(s) 280
NciI CCSGG 1 cut(s) 267
NdeI CATATG 1 cut(s) 93
NdeII GATC 1 cut(s) 103
NlaIII CATG 2 cut(s) 55, 301
NlaIV GGNNCC 2 cut(s) 57, 105
NmuCI GTSAC 2 cut(s) 21, 74
PcsI WCGNNNNNNNCGW 1 cut(s) 135
PfeI GAWTC 1 cut(s) 252
PflMI CCANNNNNTGG 1 cut(s) 298
PkrI GCNGC 1 cut(s) 310
PleI GAGTC 1 cut(s) 28
PpsI GAGTC 1 cut(s) 28
Psp6I CCWGG 1 cut(s) 58
PspFI CCCAGC 1 cut(s) 311
PspGI CCWGG 1 cut(s) 58
PspN4I GGNNCC 2 cut(s) 57, 105
PspPI GGNCC 1 cut(s) 268
PsuI RGATCY 1 cut(s) 103
SaqAI TTAA 2 cut(s) 135, 177
SatI GCNGC 1 cut(s) 309
Sau3AI GATC 1 cut(s) 103
Sau96I GGNCC 1 cut(s) 268
SchI GAGTC 1 cut(s) 29
ScrFI CCNGG 2 cut(s) 60, 267
SduI GDGCHC 2 cut(s) 42, 186
Sse9I AATT 4 cut(s) 123, 159, 174, 235
SsiI CCGC 1 cut(s) 190
SspMI CTAG 1 cut(s) 69
StyD4I CCNGG 2 cut(s) 58, 265
TaaI ACNGT 1 cut(s) 396
TaiI ACGT 3 cut(s) 141, 151, 384
TaqI TCGA 1 cut(s) 169
TasI AATT 4 cut(s) 123, 159, 174, 235
TfiI GAWTC 1 cut(s) 252
Tru1I TTAA 2 cut(s) 135, 177
Tru9I TTAA 2 cut(s) 135, 177
TseFI GTSAC 2 cut(s) 21, 74
TseI GCWGC 1 cut(s) 308
Tsp45I GTSAC 2 cut(s) 21, 74
TspDTI ATGAA 1 cut(s) 155
Van91I CCANNNNNTGG 1 cut(s) 298
VneI GTGCAC 1 cut(s) 182
XspI CTAG 1 cut(s) 69
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.