Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr2

Orthogroup ID

OG0009052

Physical Location & Seq

Genomic Coordinates Forward (+)

1745479 .. 1748540

Gene Structure 3062 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom02g02770.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 543 bp

ATGGGGTGGTTCGGGGAGACCCTGGACTCCATCAAGTCCATTCAGATCAGACAAGCTCTTTCCCAAGCCGTCACTCTCGGGTTGATTGTGACGTCGGCATTGATTATATGGAAAGGGTTGATATGTATGACTGGGAGTGAATCGCCTGTGGTGGTTGTACTATCTGAAAGCATGGAGCCTGGCTTTGCAAGGGGTGACATTTTGTTCTTGCATATGAGCGCGGATCCTATTCGTGCAGGAGAAATCGTGGTGTTTAACGTGGATGGACGTGATATTCCAATTGTTCATCGAGTAATTAAGGTTCATGAGGAGAAAGATACTGGAGAAGTCTATGTCCTCACAAAAGGAGACAATAACTTTGATGATGACAGGAGCCTGTATGCTCGGGGCCAGCGGTGGTTGCACCGACGCCATATCATGGGGAGAGCTGTTGGGTTTTTGCCTCACGTTGGCTGGGTGACAATTATCATGACAGAAAAGCCTATAATCAAGTACATTCTCATAGGGGCGCTGGGATTGCTGGTCATAACCTCCAAGGATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko03060 map03060

Pfam Domains

Protein Families

Peptidase_S24

Protein Analysis

181

Amino Acids

20.02

Weight (kDa)

6.59

Isoelectric Point (pI)

34.4

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009052)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G15710
fragaria_vesca	FvH4_1g03470
malus_domestica	MD02G1033800.v1.1 MD15G1174600.v1.1
prunus_persica	Prupe.7G241300_v2.0.a1 Prupe.7G241300_v2.0.a1 Prupe.7G241300_v2.0.a1 Prupe.7G241300_v2.0.a1 Prupe.7G241300_v2.0.a1
pyrus_communis	pycom02g02770
rosa_chinensis	RchiOBHm_Chr2g0088691
rosa_laevigata	RLG00000015976
rosa_multiflora	Rmu_sc0006835.1_g000010 Rmu_sc0015442.1_g000015
rosa_roxburghii	Rroxscaffold_2G00152400
rosa_rugosa	Rorug01G0485900 Rorug01G0485900
rosa_samantha	Rh2AG041400 Rh2BG040100 Rh2CG040900 Rh2DG040500
rosa_wichuraiana	Rw2G003300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	95
AccB7I	CCANNNNNTGG	1 cut(s)	418
AccII	CGCG	1 cut(s)	221
AciI	CCGC	2 cut(s)	221, 394
AclWI	GGATC	2 cut(s)	218, 231
AcyI	GRCGYC	2 cut(s)	92, 409
AfaI	GTAC	2 cut(s)	159, 494
AfiI	CCNNNNNNNGG	2 cut(s)	418, 449
AjiI	CACGTC	1 cut(s)	269
AjnI	CCWGG	2 cut(s)	21, 178
AluBI	AGCT	2 cut(s)	56, 428
AluI	AGCT	2 cut(s)	56, 428
Alw26I	GTCTC	2 cut(s)	11, 342
AlwI	GGATC	2 cut(s)	218, 231
Ama87I	CYCGRG	2 cut(s)	77, 384
AoxI	GGCC	1 cut(s)	388
ArsI	GACNNNNNNTTYG	2 cut(s)	341, 373
AspLEI	GCGC	2 cut(s)	221, 511
AspS9I	GGNCC	1 cut(s)	388
AsuHPI	GGTGA	2 cut(s)	206, 469
AvaI	CYCGRG	2 cut(s)	77, 384
BamHI	GGATCC	1 cut(s)	223
BccI	CCATC	2 cut(s)	38, 257
BceAI	ACGGC	1 cut(s)	53
BciT130I	CCWGG	2 cut(s)	23, 180
BcoDI	GTCTC	2 cut(s)	11, 342
BfoI	RGCGCY	1 cut(s)	512
Bme1390I	CCNGG	2 cut(s)	23, 180
BmeT110I	CYCGRG	2 cut(s)	77, 384
BmgBI	CACGTC	1 cut(s)	269
BmgT120I	GGNCC	1 cut(s)	388
BmiI	GGNNCC	4 cut(s)	177, 225, 374, 389
BmrFI	CCNGG	2 cut(s)	23, 180
BmrI	ACTGGG	1 cut(s)	141
BmuI	ACTGGG	1 cut(s)	141
BpmI	CTGGAG	1 cut(s)	342
BsaHI	GRCGYC	2 cut(s)	92, 409
BsaI	GGTCTC	1 cut(s)	11
BsaJI	CCNNGG	2 cut(s)	21, 534
BsaXI	ACNNNNNCTCC	2 cut(s)	231, 261
Bsc4I	CCNNNNNNNGG	2 cut(s)	418, 449
Bse1I	ACTGG	2 cut(s)	136, 325
BseBI	CCWGG	2 cut(s)	23, 180
BseDI	CCNNGG	2 cut(s)	21, 534
BseGI	GGATG	1 cut(s)	268
BseLI	CCNNNNNNNGG	2 cut(s)	418, 449
BseNI	ACTGG	2 cut(s)	136, 325
BseRI	GAGGAG	1 cut(s)	323
BseYI	CCCAGC	2 cut(s)	453, 511
BsgI	GTGCAG	1 cut(s)	255
Bsh1236I	CGCG	1 cut(s)	221
BshFI	GGCC	1 cut(s)	390
BsiHKCI	CYCGRG	2 cut(s)	77, 384
BslI	CCNNNNNNNGG	2 cut(s)	418, 449
BsmAI	GTCTC	2 cut(s)	11, 342
BsnI	GGCC	1 cut(s)	390
Bso31I	GGTCTC	1 cut(s)	11
BsoBI	CYCGRG	2 cut(s)	77, 384
Bsp143I	GATC	2 cut(s)	45, 223
BspACI	CCGC	2 cut(s)	221, 394
BspANI	GGCC	1 cut(s)	390
BspFNI	CGCG	1 cut(s)	221
BspHI	TCATGA	2 cut(s)	304, 468
BspLI	GGNNCC	4 cut(s)	177, 225, 374, 389
BspPI	GGATC	2 cut(s)	218, 231
BspTNI	GGTCTC	1 cut(s)	11
BsrI	ACTGG	2 cut(s)	136, 325
BssECI	CCNNGG	2 cut(s)	21, 534
BssMI	GATC	2 cut(s)	45, 223
BssNI	GRCGYC	2 cut(s)	92, 409
BssT1I	CCWWGG	1 cut(s)	534
Bst2UI	CCWGG	2 cut(s)	23, 180
BstACI	GRCGYC	2 cut(s)	92, 409
BstC8I	GCNNGC	1 cut(s)	392
BstF5I	GGATG	1 cut(s)	268
BstFNI	CGCG	1 cut(s)	221
BstH2I	RGCGCY	1 cut(s)	512
BstHHI	GCGC	2 cut(s)	221, 511
BstKTI	GATC	2 cut(s)	48, 226
BstMAI	GTCTC	2 cut(s)	11, 342
BstMBI	GATC	2 cut(s)	45, 223
BstMWI	GCNNNNNNNGC	2 cut(s)	400, 517
BstNI	CCWGG	2 cut(s)	23, 180
BstSCI	CCNGG	2 cut(s)	21, 178
BstUI	CGCG	1 cut(s)	221
BstX2I	RGATCY	1 cut(s)	223
BstYI	RGATCY	1 cut(s)	223
BsuRI	GGCC	1 cut(s)	390
BtrI	CACGTC	1 cut(s)	269
BtsCI	GGATG	1 cut(s)	268
Cac8I	GCNNGC	1 cut(s)	392
CciI	TCATGA	2 cut(s)	304, 468
CfoI	GCGC	2 cut(s)	221, 511
Cfr13I	GGNCC	1 cut(s)	388
CseI	GACGC	1 cut(s)	417
Csp6I	GTAC	2 cut(s)	158, 493
CviAII	CATG	4 cut(s)	172, 305, 418, 469
CviJI	RGCY	9 cut(s)	56, 68, 178, 183, 375, 390, 428, 453, 481
CviKI_1	RGCY	9 cut(s)	56, 68, 178, 183, 375, 390, 428, 453, 481
CviQI	GTAC	2 cut(s)	158, 493
DpnI	GATC	2 cut(s)	47, 225
DpnII	GATC	2 cut(s)	45, 223
Eco130I	CCWWGG	1 cut(s)	534
Eco31I	GGTCTC	1 cut(s)	11
Eco88I	CYCGRG	2 cut(s)	77, 384
EcoRII	CCWGG	2 cut(s)	21, 178
EcoT14I	CCWWGG	1 cut(s)	534
ErhI	CCWWGG	1 cut(s)	534
FaeI	CATG	4 cut(s)	175, 308, 421, 472
FatI	CATG	4 cut(s)	171, 304, 417, 468
FauNDI	CATATG	1 cut(s)	213
FokI	GGATG	1 cut(s)	275
GlaI	GCGC	2 cut(s)	220, 510
GsaI	CCCAGC	2 cut(s)	457, 515
GsuI	CTGGAG	1 cut(s)	342
HaeII	RGCGCY	1 cut(s)	512
HaeIII	GGCC	1 cut(s)	390
HgaI	GACGC	1 cut(s)	417
HhaI	GCGC	2 cut(s)	221, 511
Hin1I	GRCGYC	2 cut(s)	92, 409
Hin1II	CATG	4 cut(s)	175, 308, 421, 472
Hin6I	GCGC	2 cut(s)	219, 509
HinP1I	GCGC	2 cut(s)	219, 509
HinfI	GANTC	2 cut(s)	26, 140
HphI	GGTGA	2 cut(s)	206, 469
Hpy188I	TCNGA	3 cut(s)	45, 50, 166
Hpy188III	TCNNGA	2 cut(s)	305, 469
Hpy99I	CGWCG	2 cut(s)	97, 411
HpyCH4IV	ACGT	4 cut(s)	92, 258, 268, 447
HpyCH4V	TGCA	4 cut(s)	188, 211, 236, 403
HpyF10VI	GCNNNNNNNGC	2 cut(s)	400, 517
HpySE526I	ACGT	4 cut(s)	92, 258, 268, 447
Hsp92I	GRCGYC	2 cut(s)	92, 409
Hsp92II	CATG	4 cut(s)	175, 308, 421, 472
HspAI	GCGC	2 cut(s)	219, 509
Kzo9I	GATC	2 cut(s)	45, 223
LmnI	GCTCC	2 cut(s)	175, 372
MaeII	ACGT	4 cut(s)	92, 258, 268, 447
MaeIII	GTNAC	4 cut(s)	70, 88, 194, 457
MalI	GATC	2 cut(s)	47, 225
MboI	GATC	2 cut(s)	45, 223
MfeI	CAATTG	1 cut(s)	279
MflI	RGATCY	1 cut(s)	223
MluCI	AATT	3 cut(s)	279, 294, 462
MlyI	GAGTC	1 cut(s)	20
MnlI	CCTC	4 cut(s)	301, 347, 453, 541
MseI	TTAA	2 cut(s)	255, 297
MspA1I	CMGCKG	1 cut(s)	394
MspR9I	CCNGG	2 cut(s)	23, 180
MunI	CAATTG	1 cut(s)	279
MvaI	CCWGG	2 cut(s)	23, 180
MvnI	CGCG	1 cut(s)	221
MwoI	GCNNNNNNNGC	2 cut(s)	400, 517
NdeI	CATATG	1 cut(s)	213
NdeII	GATC	2 cut(s)	45, 223
NlaIII	CATG	4 cut(s)	175, 308, 421, 472
NlaIV	GGNNCC	4 cut(s)	177, 225, 374, 389
NmuCI	GTSAC	4 cut(s)	70, 88, 194, 457
PagI	TCATGA	2 cut(s)	304, 468
PfeI	GAWTC	1 cut(s)	140
PflMI	CCANNNNNTGG	1 cut(s)	418
PleI	GAGTC	1 cut(s)	20
PpsI	GAGTC	1 cut(s)	20
Psp6I	CCWGG	2 cut(s)	21, 178
PspFI	CCCAGC	2 cut(s)	453, 511
PspGI	CCWGG	2 cut(s)	21, 178
PspN4I	GGNNCC	4 cut(s)	177, 225, 374, 389
PspPI	GGNCC	1 cut(s)	388
PsrI	GAACNNNNNNTAC	2 cut(s)	285, 317
PsuI	RGATCY	1 cut(s)	223
RsaI	GTAC	2 cut(s)	159, 494
RsaNI	GTAC	2 cut(s)	158, 493
SaqAI	TTAA	2 cut(s)	255, 297
Sau3AI	GATC	2 cut(s)	45, 223
Sau96I	GGNCC	1 cut(s)	388
SchI	GAGTC	1 cut(s)	20
ScrFI	CCNGG	2 cut(s)	23, 180
SetI	ASST	8 cut(s)	58, 95, 261, 271, 303, 430, 450, 533
Sse9I	AATT	3 cut(s)	279, 294, 462
SsiI	CCGC	2 cut(s)	221, 394
StyD4I	CCNGG	2 cut(s)	21, 178
StyI	CCWWGG	1 cut(s)	534
TaiI	ACGT	4 cut(s)	95, 261, 271, 450
TaqI	TCGA	1 cut(s)	289
TasI	AATT	3 cut(s)	279, 294, 462
TatI	WGTACW	2 cut(s)	157, 492
TfiI	GAWTC	1 cut(s)	140
Tru1I	TTAA	2 cut(s)	255, 297
Tru9I	TTAA	2 cut(s)	255, 297
TseFI	GTSAC	4 cut(s)	70, 88, 194, 457
Tsp45I	GTSAC	4 cut(s)	70, 88, 194, 457
TspDTI	ATGAA	2 cut(s)	275, 293
Van91I	CCANNNNNTGG	1 cut(s)	418
ZraI	GACGTC	1 cut(s)	93

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.