Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0008027

Physical Location & Seq

Genomic Coordinates Reverse (-)

5635593 .. 5638798

Gene Structure 3206 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT3G16560.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1482 bp

ATGCAGGAAGGGACTGATCCGTATGGTGAGATTGAGATAAGTTTTGGTTATCAATGCAATAATAAGAAGATAGGAATCCCTGAAGATAAAATTGCTGATGGTCGTGAGGTTCTTGGTGGGTTTAGGCTACAAAAGACTAGCAGTTTCTCTTGTTTATCAGGAGCTGCTTTAAGTGGAAACCCCACTTTAGCCAATACTAATATCTGCAATGGAGTCATTGGTTCTGAGATATTGCCGTCTCTGGATTCTCCGAAATCTTTCAGGAAAGTTCCGTCTTCGCCTGCGCTTTCGAAGCTTGATATACTCTCTCCTTCTCTCCATGGAAGTATGGTGAGTCTAAGCTGCAGCTCGTCTACTAGTCCGAGTCCTCCTGAGCCTGAATCTTGTTACTTGACGTCAATGAGTTCTCCTTCTTCTGTTAATGAAGGGTTTCTTCTCTCTGCTATGGAAGTTCAAGTTGCGGGTGGTGCTGCAGGGGAAGATAGAGTTCAAGCTGTTTGCTCTGAGGAGAATGGTTGGTTGTTTTGCGCTATCTATGATGGATTCAACGGAAGAGATGCTGCTGATTTCTTGGCATGTACTTTATATGAGTCCATTGTGTTTCATCTTCAGTTGCTTGATCGTCAAATGAAGCAAACAAAGTCCGATGATGATGGCGAAAAGTTGGAATTGTTATCAAATATAAGTAATGTAGATTACTCTTCCACTGATTTGTTCAGGCAAGGAGTACTAGATTGCTTGAACCGTGCGCTTTTTCAGGCGGAAACCGATTTCCTAAGGATGGTTGAGCAAGAAATGGAAGAAAGACCGGATTTAGTATCCGTTGGATCTTGTGTTTTGGTCACTCTCCTGGTTGGGAAGGATCTATACGTCCTTAATCTTGGTGATAGCAGAGCTGTTCTAGCGACCTACAATGGTAATAAGAAGCTGCAAGCTGTTCAGCTCACAGAGGATCATACAGTTGATAACGAAGTCGAAGAAGCTAGACTCTTAAGTGAGCATCTTGATGATCCTAAGATCGTTATTGGTGGGAAAATCAAAGGAAAGCTTAAAGTTACTCGTGCTCTCGGAGTTGGTTACTTGAAGAAGGAGAAACTAAATGATGCACTCATGGGGATCCTCCGCGTTCGTAACCTTTTGAGCCCGCCTTATGTTTCAGTGGAACCATCGATGAGAGTTCACAAGATAACGGAATCAGATCACTTTGTTATAGTTGCAAGCGATGGTTTGTTTGATTTCTTCAGCAACGAGGAAGCGATTGGGCTCGTCCATTCCTTCGTTTCTAGTAATCCTTCTGGTGATCCAGCAAAGTTTCTGCTTGAACGTCTTGTAGCTAAAGCTGCTGCTCGTGCTGGCTTTACCTTGGAAGAATTGACGAATGTTCCGGCTGGTAGGAGAAGGAGATATCATGACGATGTGACTATAATGGTAATCACTCTAGGTACCGATCAACGTACCTCAAAAGCTTCTACGTTCGTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PP2C

Protein Analysis

493

Amino Acids

53.61

Weight (kDa)

5.0

Isoelectric Point (pI)

46.76

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PP2C_2	PF13672	156 - 420	5.7e-06	Protein phosphatase 2C
PP2C	PF00481	232 - 450	1e-36	Protein phosphatase 2C

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008027)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G16560 AT3G16560 AT3G16560 AT3G16560
fragaria_vesca	FvH4_4g17950 FvH4_4g17950 FvH4_4g17950 FvH4_4g17950 FvH4_4g17950
malus_domestica	MD13G1169100.v1.1 MD16G1170400.v1.1
prunus_persica	Prupe.1G137500_v2.0.a1
pyrus_communis	pycom13g14470 pycom16g14280
rosa_chinensis	RchiOBHm_Chr4g0422121
rosa_laevigata	RLG00000007634
rosa_multiflora	Rmu_sc0009286.1_g000005
rosa_roxburghii	Rroxscaffold_5G00364200
rosa_rugosa	Rorug04G0177500
rosa_samantha	Rh4AG237000 Rh4BG239800 Rh4CG251700 Rh4DG235900
rosa_wichuraiana	Rw4G020500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	398
Acc65I	GGTACC	1 cut(s)	1442
AccB1I	GGYRCC	1 cut(s)	1442
AccI	GTMKAC	1 cut(s)	353
AccII	CGCG	1 cut(s)	1125
AciI	CCGC	4 cut(s)	461, 761, 1123, 1145
AclWI	GGATC	8 cut(s)	11, 835, 870, 960, 1004, 1111, 1124, 1295
AcuI	CTGAAG	3 cut(s)	102, 593, 1225
AcyI	GRCGYC	1 cut(s)	395
AfaI	GTAC	4 cut(s)	580, 729, 1444, 1456
AfiI	CCNNNNNNNGG	1 cut(s)	781
AflII	CTTAAG	1 cut(s)	991
AgsI	TTSAA	6 cut(s)	455, 491, 547, 742, 1084, 1322
AhlI	ACTAGT	1 cut(s)	356
AjnI	CCWGG	1 cut(s)	849
Alw21I	GWGCWC	1 cut(s)	1066
Alw26I	GTCTC	1 cut(s)	243
AlwI	GGATC	8 cut(s)	11, 835, 870, 960, 1004, 1111, 1124, 1295
AlwNI	CAGNNNCTG	1 cut(s)	164
ApeKI	GCWGC	8 cut(s)	164, 342, 345, 470, 560, 928, 1340, 1343
Asp700I	GAANNNNTTC	2 cut(s)	257, 429
Asp718I	GGTACC	1 cut(s)	1442
AspLEI	GCGC	3 cut(s)	286, 530, 751
AsuHPI	GGTGA	4 cut(s)	38, 343, 896, 1310
AsuII	TTCGAA	1 cut(s)	290
AxyI	CCTNAGG	1 cut(s)	776
BamHI	GGATCC	1 cut(s)	1116
BanI	GGYRCC	1 cut(s)	1442
BanII	GRGCYC	2 cut(s)	1145, 1266
BarI	GAAGNNNNNNTAC	2 cut(s)	851, 883
BauI	CACGAG	2 cut(s)	1059, 1347
BbsI	GAAGAC	1 cut(s)	267
Bbv12I	GWGCWC	1 cut(s)	1066
BbvI	GCAGC	8 cut(s)	151, 329, 357, 457, 547, 915, 1327, 1330
BccI	CCATC	6 cut(s)	92, 533, 647, 775, 1174, 1217
BceAI	ACGGC	1 cut(s)	220
BciT130I	CCWGG	1 cut(s)	851
BciVI	GTATCC	1 cut(s)	829
BcoDI	GTCTC	1 cut(s)	243
BcuI	ACTAGT	1 cut(s)	356
BfaI	CTAG	7 cut(s)	138, 357, 731, 902, 984, 1284, 1439
BfmI	CTRYAG	2 cut(s)	343, 471
BfrI	CTTAAG	1 cut(s)	991
BfuI	GTATCC	1 cut(s)	829
BisI	GCNGC	8 cut(s)	165, 343, 346, 471, 561, 929, 1341, 1344
BlsI	GCNGC	8 cut(s)	166, 344, 347, 472, 562, 930, 1342, 1345
BmcAI	AGTACT	1 cut(s)	729
Bme1390I	CCNGG	1 cut(s)	851
BmiI	GGNNCC	3 cut(s)	1118, 1164, 1444
BmrFI	CCNGG	1 cut(s)	851
BmsI	GCATC	3 cut(s)	547, 1009, 1093
BpiI	GAAGAC	1 cut(s)	267
Bpu10I	CCTNAGC	1 cut(s)	372
Bpu14I	TTCGAA	1 cut(s)	290
Bsa29I	ATCGAT	1 cut(s)	1169
BsaBI	GATNNNNATC	1 cut(s)	74
BsaHI	GRCGYC	1 cut(s)	395
BsaJI	CCNNGG	2 cut(s)	319, 1362
BsaWI	WCCGGW	1 cut(s)	808
Bsc4I	CCNNNNNNNGG	1 cut(s)	781
Bse21I	CCTNAGG	1 cut(s)	776
Bse3DI	GCAATG	1 cut(s)	214
Bse8I	GATNNNNATC	1 cut(s)	74
BseBI	CCWGG	1 cut(s)	851
BseCI	ATCGAT	1 cut(s)	1169
BseDI	CCNNGG	2 cut(s)	319, 1362
BseGI	GGATG	1 cut(s)	786
BseJI	GATNNNNATC	1 cut(s)	74
BseLI	CCNNNNNNNGG	1 cut(s)	781
BseMI	GCAATG	1 cut(s)	214
BseMII	CTCAG	3 cut(s)	216, 363, 495
BseRI	GAGGAG	1 cut(s)	521
BseXI	GCAGC	8 cut(s)	151, 329, 357, 457, 547, 915, 1327, 1330
Bsh1236I	CGCG	1 cut(s)	1125
BshNI	GGYRCC	1 cut(s)	1442
BshVI	ATCGAT	1 cut(s)	1169
BsiHKAI	GWGCWC	1 cut(s)	1066
BsiSI	CCGG	2 cut(s)	809, 1385
BslFI	GGGAC	1 cut(s)	25
BslI	CCNNNNNNNGG	1 cut(s)	781
BsmAI	GTCTC	1 cut(s)	243
BsmBI	CGTCTC	1 cut(s)	243
BsmFI	GGGAC	1 cut(s)	25
Bsp119I	TTCGAA	1 cut(s)	290
Bsp1286I	GDGCHC	3 cut(s)	1066, 1145, 1266
Bsp19I	CCATGG	1 cut(s)	319
BspACI	CCGC	4 cut(s)	461, 761, 1123, 1145
BspCNI	CTCAG	3 cut(s)	217, 364, 496
BspDI	ATCGAT	1 cut(s)	1169
BspFNI	CGCG	1 cut(s)	1125
BspHI	TCATGA	1 cut(s)	1408
BspLI	GGNNCC	3 cut(s)	1118, 1164, 1444
BspMAI	CTGCAG	2 cut(s)	347, 475
BspPI	GGATC	8 cut(s)	11, 835, 870, 960, 1004, 1111, 1124, 1295
BspT104I	TTCGAA	1 cut(s)	290
BspT107I	GGYRCC	1 cut(s)	1442
BspTI	CTTAAG	1 cut(s)	991
BsrDI	GCAATG	1 cut(s)	214
BssECI	CCNNGG	2 cut(s)	319, 1362
BssNI	GRCGYC	1 cut(s)	395
BssSI	CACGAG	2 cut(s)	1059, 1347
BssT1I	CCWWGG	2 cut(s)	319, 1362
Bst2BI	CACGAG	2 cut(s)	1059, 1347
Bst2UI	CCWGG	1 cut(s)	851
Bst4CI	ACNGT	2 cut(s)	746, 961
Bst6I	CTCTTC	2 cut(s)	547, 706
BstACI	GRCGYC	1 cut(s)	395
BstAFI	CTTAAG	1 cut(s)	991
BstBI	TTCGAA	1 cut(s)	290
BstC8I	GCNNGC	5 cut(s)	282, 933, 1145, 1219, 1354
BstDEI	CTNAG	6 cut(s)	225, 338, 372, 504, 776, 1014
BstDSI	CCRYGG	1 cut(s)	319
BstF5I	GGATG	1 cut(s)	786
BstFNI	CGCG	1 cut(s)	1125
BstHHI	GCGC	3 cut(s)	286, 530, 751
BstMAI	GTCTC	1 cut(s)	243
BstMWI	GCNNNNNNNGC	5 cut(s)	292, 467, 902, 1340, 1349
BstNI	CCWGG	1 cut(s)	851
BstNSI	RCATGY	1 cut(s)	579
BstSCI	CCNGG	1 cut(s)	849
BstSFI	CTRYAG	2 cut(s)	343, 471
BstUI	CGCG	1 cut(s)	1125
BstV1I	GCAGC	8 cut(s)	151, 329, 357, 457, 547, 915, 1327, 1330
BstV2I	GAAGAC	1 cut(s)	267
BstX2I	RGATCY	3 cut(s)	827, 862, 1116
BstYI	RGATCY	3 cut(s)	827, 862, 1116
Bsu15I	ATCGAT	1 cut(s)	1169
Bsu36I	CCTNAGG	1 cut(s)	776
BsuI	GTATCC	1 cut(s)	829
BsuTUI	ATCGAT	1 cut(s)	1169
BtgI	CCRYGG	1 cut(s)	319
BtgZI	GCGATG	1 cut(s)	1236
BtsCI	GGATG	1 cut(s)	786
BtsIMutI	CAGTG	2 cut(s)	705, 1164
Cac8I	GCNNGC	5 cut(s)	282, 933, 1145, 1219, 1354
CaiI	CAGNNNCTG	1 cut(s)	164
CciI	TCATGA	1 cut(s)	1408
CfoI	GCGC	3 cut(s)	286, 530, 751
ClaI	ATCGAT	1 cut(s)	1169
Csp6I	GTAC	4 cut(s)	579, 728, 1443, 1455
CviAII	CATG	4 cut(s)	320, 576, 1111, 1409
CviQI	GTAC	4 cut(s)	579, 728, 1443, 1455
DdeI	CTNAG	6 cut(s)	225, 338, 372, 504, 776, 1014
Eam1104I	CTCTTC	2 cut(s)	547, 706
EarI	CTCTTC	2 cut(s)	547, 706
EciI	GGCGGA	1 cut(s)	776
Eco130I	CCWWGG	2 cut(s)	319, 1362
Eco24I	GRGCYC	2 cut(s)	1145, 1266
Eco32I	GATATC	1 cut(s)	1406
Eco57I	CTGAAG	3 cut(s)	102, 593, 1225
Eco81I	CCTNAGG	1 cut(s)	776
EcoRII	CCWGG	1 cut(s)	849
EcoRV	GATATC	1 cut(s)	1406
EcoT14I	CCWWGG	2 cut(s)	319, 1362
EcoT38I	GRGCYC	2 cut(s)	1145, 1266
ErhI	CCWWGG	2 cut(s)	319, 1362
Esp3I	CGTCTC	1 cut(s)	243
FaeI	CATG	4 cut(s)	323, 579, 1114, 1412
FalI	AAGNNNNNCTT	4 cut(s)	417, 449, 1032, 1064
FaqI	GGGAC	1 cut(s)	25
FatI	CATG	4 cut(s)	319, 575, 1110, 1408
FauI	CCCGC	2 cut(s)	454, 1152
FblI	GTMKAC	1 cut(s)	353
Fnu4HI	GCNGC	8 cut(s)	165, 343, 346, 471, 561, 929, 1341, 1344
FokI	GGATG	1 cut(s)	793
FriOI	GRGCYC	2 cut(s)	1145, 1266
Fsp4HI	GCNGC	8 cut(s)	165, 343, 346, 471, 561, 929, 1341, 1344
FspBI	CTAG	7 cut(s)	138, 357, 731, 902, 984, 1284, 1439
GlaI	GCGC	3 cut(s)	285, 529, 750
GluI	GCNGC	8 cut(s)	165, 343, 346, 471, 561, 929, 1341, 1344
HapII	CCGG	2 cut(s)	809, 1385
HhaI	GCGC	3 cut(s)	286, 530, 751
Hin1I	GRCGYC	1 cut(s)	395
Hin1II	CATG	4 cut(s)	323, 579, 1114, 1412
Hin6I	GCGC	3 cut(s)	284, 528, 749
HinP1I	GCGC	3 cut(s)	284, 528, 749
HindIII	AAGCTT	3 cut(s)	293, 1046, 1464
HpaII	CCGG	2 cut(s)	809, 1385
HphI	GGTGA	4 cut(s)	38, 343, 896, 1310
Hpy166II	GTNNAC	2 cut(s)	354, 1180
Hpy188I	TCNGA	7 cut(s)	226, 252, 363, 505, 646, 1070, 1198
Hpy188III	TCNNGA	7 cut(s)	104, 159, 242, 262, 371, 1004, 1409
Hpy8I	GTNNAC	2 cut(s)	354, 1180
HpyAV	CCTTC	8 cut(s)	321, 419, 420, 853, 1081, 1285, 1302, 1392
HpyCH4III	ACNGT	2 cut(s)	746, 961
HpyCH4IV	ACGT	5 cut(s)	395, 870, 1324, 1453, 1472
HpyCH4V	TGCA	8 cut(s)	4, 57, 207, 345, 473, 931, 1106, 1217
HpyF10VI	GCNNNNNNNGC	5 cut(s)	292, 467, 902, 1340, 1349
HpyF3I	CTNAG	6 cut(s)	225, 338, 372, 504, 776, 1014
HpySE526I	ACGT	5 cut(s)	395, 870, 1324, 1453, 1472
Hsp92I	GRCGYC	1 cut(s)	395
Hsp92II	CATG	4 cut(s)	323, 579, 1114, 1412
HspAI	GCGC	3 cut(s)	284, 528, 749
KpnI	GGTACC	1 cut(s)	1446
LmnI	GCTCC	1 cut(s)	161
Lsp1109I	GCAGC	8 cut(s)	151, 329, 357, 457, 547, 915, 1327, 1330
LweI	GCATC	3 cut(s)	547, 1009, 1093
MaeI	CTAG	7 cut(s)	138, 357, 731, 902, 984, 1284, 1439
MaeII	ACGT	5 cut(s)	395, 870, 1324, 1453, 1472
MaeIII	GTNAC	6 cut(s)	386, 841, 1054, 1076, 1130, 1417
MflI	RGATCY	3 cut(s)	827, 862, 1116
MhlI	GDGCHC	3 cut(s)	1066, 1145, 1266
MluCI	AATT	3 cut(s)	90, 668, 1370
MlyI	GAGTC	5 cut(s)	222, 343, 373, 599, 981
MmeI	TCCRAC	2 cut(s)	645, 805
MnlI	CCTC	7 cut(s)	100, 378, 499, 943, 1130, 1243, 1468
MroXI	GAANNNNTTC	2 cut(s)	257, 429
MseI	TTAA	5 cut(s)	170, 420, 876, 992, 1050
MslI	CAYNNNNRTG	2 cut(s)	1005, 1413
MspCI	CTTAAG	1 cut(s)	991
MspI	CCGG	2 cut(s)	809, 1385
MspR9I	CCNGG	1 cut(s)	851
MvaI	CCWGG	1 cut(s)	851
MvnI	CGCG	1 cut(s)	1125
MwoI	GCNNNNNNNGC	5 cut(s)	292, 467, 902, 1340, 1349
NcoI	CCATGG	1 cut(s)	319
NlaIII	CATG	4 cut(s)	323, 579, 1114, 1412
NlaIV	GGNNCC	3 cut(s)	1118, 1164, 1444
NmuCI	GTSAC	2 cut(s)	841, 1417
NspI	RCATGY	1 cut(s)	579
NspV	TTCGAA	1 cut(s)	290
PagI	TCATGA	1 cut(s)	1408
PdmI	GAANNNNTTC	2 cut(s)	257, 429
PfeI	GAWTC	5 cut(s)	75, 245, 380, 543, 1193
PkrI	GCNGC	8 cut(s)	166, 344, 347, 472, 562, 930, 1342, 1345
PleI	GAGTC	5 cut(s)	221, 342, 372, 598, 981
PpsI	GAGTC	5 cut(s)	221, 342, 372, 598, 981
Psp6I	CCWGG	1 cut(s)	849
PspGI	CCWGG	1 cut(s)	849
PspN4I	GGNNCC	3 cut(s)	1118, 1164, 1444
PstI	CTGCAG	2 cut(s)	347, 475
PstNI	CAGNNNCTG	1 cut(s)	164
PsuI	RGATCY	3 cut(s)	827, 862, 1116
RsaI	GTAC	4 cut(s)	580, 729, 1444, 1456
RsaNI	GTAC	4 cut(s)	579, 728, 1443, 1455
RseI	CAYNNNNRTG	2 cut(s)	1005, 1413
SaqAI	TTAA	5 cut(s)	170, 420, 876, 992, 1050
SatI	GCNGC	8 cut(s)	165, 343, 346, 471, 561, 929, 1341, 1344
ScaI	AGTACT	1 cut(s)	729
SchI	GAGTC	5 cut(s)	222, 343, 373, 599, 981
ScrFI	CCNGG	1 cut(s)	851
SduI	GDGCHC	3 cut(s)	1066, 1145, 1266
SfaNI	GCATC	3 cut(s)	547, 1009, 1093
SfcI	CTRYAG	2 cut(s)	343, 471
SfuI	TTCGAA	1 cut(s)	290
SmiMI	CAYNNNNRTG	2 cut(s)	1005, 1413
SmlI	CTYRAG	1 cut(s)	991
SmoI	CTYRAG	1 cut(s)	991
SpeI	ACTAGT	1 cut(s)	356
Sse9I	AATT	3 cut(s)	90, 668, 1370
SsiI	CCGC	4 cut(s)	461, 761, 1123, 1145
SspMI	CTAG	7 cut(s)	138, 357, 731, 902, 984, 1284, 1439
StyD4I	CCNGG	1 cut(s)	849
StyI	CCWWGG	2 cut(s)	319, 1362
TaaI	ACNGT	2 cut(s)	746, 961
TaiI	ACGT	5 cut(s)	398, 873, 1327, 1456, 1475
TaqI	TCGA	3 cut(s)	290, 975, 1169
TasI	AATT	3 cut(s)	90, 668, 1370
TatI	WGTACW	2 cut(s)	578, 727
TfiI	GAWTC	5 cut(s)	75, 245, 380, 543, 1193
Tru1I	TTAA	5 cut(s)	170, 420, 876, 992, 1050
Tru9I	TTAA	5 cut(s)	170, 420, 876, 992, 1050
TscAI	CASTG	2 cut(s)	712, 1164
TseFI	GTSAC	2 cut(s)	841, 1417
TseI	GCWGC	8 cut(s)	164, 342, 345, 470, 560, 928, 1340, 1343
Tsp45I	GTSAC	2 cut(s)	841, 1417
TspDTI	ATGAA	3 cut(s)	438, 593, 644
TspGWI	ACGGA	5 cut(s)	9, 261, 564, 811, 1205
TspRI	CASTG	2 cut(s)	712, 1164
Vha464I	CTTAAG	1 cut(s)	991
XceI	RCATGY	1 cut(s)	579
XmiI	GTMKAC	1 cut(s)	353
XmnI	GAANNNNTTC	2 cut(s)	257, 429
XspI	CTAG	7 cut(s)	138, 357, 731, 902, 984, 1284, 1439
ZraI	GACGTC	1 cut(s)	396
ZrmI	AGTACT	1 cut(s)	729

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.