Prupe.1G137500_v2.0.a1

phosphatase 2c

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp01
OG0008027
Physical Location & Seq
Forward (+)
10763941 .. 10766203
2263 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.1G137500.1

Sequence Viewer

Length: 1578 bp
ATGCGAGGAGGAATTATGATTAAACCTGAAGGAGAACTAAAAGTAAGCTTTGGCTATCAATGCAATAGCAACAGAAACAGTTCTTGTGAGGATTCTGATGAATATGAAACCCTGCCTGAACTCCGAAGGAACAGTAGTTTCTCTTGCTTGTCTGGTGCTGCCTTAAGTGCTAATGCTACTCTGGCAAACACAAATATCTGTAATGGTTTGATAGGGGCAGAAATACTTCCCAGTTGGGACTCCCCTAATTCATTTCGTAAGGTTCCCTCTTCACCAACTCTTTCAAGGTTGGACATACTATCATCTTCTCTTCAGAGTAGTATGTCAAACTTAAGTTGCAGTCCATCTACACCTGATTCTGATTCTTACTTATTGAAATCCATGAGTCCTTCTTCCAGAAGTGAAGGTTTTCTTAATGCCATGGAAGTGCAAGTGGCAGGTGGAGCTGCTGGTGAAGACAGGGTTCAAGCTGTCTGTTCTGAAGAAAATGGGTGGCTCTTTTGTGCAATATATGATGGCTTTAATGGAAGAGACGCAGCTGATTTTCTGGCTGGGACACTGTATGAAACCATCGTATTTTACTTTAATTTATTAGACTGGGAATCAAGTCAGGAATCCATCAAAGCTTCTAGTGGTCTAGATTTAGATGGGTCCCTTCCATATATAGAAGATGATAGCAATACTATTAACGAAGAAAGATTTCTACCCCAAATTTACAGAGACACGGATTCAAGTGTTGACAATGTCTCCAAGAATGCTCCATGTGCTAAACCAAAAGTATCCACTAATTCATTTAGGCATGGGGTGCTTGACAGCCTCGAACGTGCTCTTAGTCAGGCTGAAAATGACTTTCTATACATGGTTGAGCAGGAAATGGAGGATCGCCCAGATTTGGTTTCTGTTGGGTCTTGTGTTTTAGTTGTGCTTCTACATGGGAAGGATTTGTATACACTTAATTTAGGTGACAGCCGAGCTGTTTTGGCAACATATGGTGATGGTGATTTCATGAATGGGAGTGAGAGGCTAAAAGCTATTCAGCTCACAGATAGTCATACAGTTGATGACGAAGGTGAAAGGATGCGAGTTTTGTGTGATCATCCTGATGATCCCATGACCATTGTGGCTGGAAGAGTAAAAGGGAAATTGAAGGTCACTCGAGCTTTTGGGGTTGGTTACTTGAAAAAGAAAAAACTGAATGATGCATTGATGGGAATTCTTCAAGTTCGCAACCTTATGAGCCCACCATATGTTTCCACTCAACCATCGTTGAATGTGCATAGAATATCAAAATCTGATTGTTTTGTTGTAGTTGGGAGTGATGGTTTGTTTGACTTTTTTACCAATGACGAGGCGGTAAAGCTTGTCCATTCCTATATCTTGAGCAACCCCTCTGGTGATCCAGCTAAGTTTCTGCTGGAGCAGCTTGTAGTAAGAGCAGCCAATTGTGCAGGTTTCAGTATGGAAGAATTAATGAATATTCCAGCAGGAAGGAGGAGGAAGTATCATGATGATGTAACTGTAATTGTGATTATTCTGGGTACAAATCAGCGTACTACAAAGGCATCAACGTGCGTGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PP2C

Protein Analysis

526

Amino Acids

57.42

Weight (kDa)

4.83

Isoelectric Point (pI)

43.52

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 428
Acc36I ACCTGC 2 cut(s) 428, 1439
AccI GTMKAC 1 cut(s) 947
AciI CCGC 1 cut(s) 1352
AclWI GGATC 3 cut(s) 888, 1100, 1391
AcsI RAATTY 2 cut(s) 711, 1212
AcuI CTGAAG 3 cut(s) 48, 296, 501
AfaI GTAC 2 cut(s) 1540, 1552
AfiI CCNNNNNNNGG 1 cut(s) 892
AflII CTTAAG 2 cut(s) 163, 331
AgsI TTSAA 8 cut(s) 285, 376, 467, 732, 1147, 1180, 1220, 1270
Alw21I GWGCWC 1 cut(s) 829
Alw26I GTCTC 3 cut(s) 525, 714, 751
AlwI GGATC 3 cut(s) 888, 1100, 1391
Ama87I CYCGRG 1 cut(s) 1155
ApeKI GCWGC 5 cut(s) 158, 446, 536, 1420, 1436
ApoI RAATTY 2 cut(s) 711, 1212
AseI ATTAAT 1 cut(s) 1469
Asp700I GAANNNNTTC 4 cut(s) 79, 225, 408, 699
AspS9I GGNCC 1 cut(s) 651
AsuHPI GGTGA 7 cut(s) 264, 464, 974, 1004, 1010, 1082, 1406
AvaI CYCGRG 1 cut(s) 1155
AvaII GGWCC 1 cut(s) 651
BanII GRGCYC 1 cut(s) 1241
BbsI GAAGAC 1 cut(s) 462
Bbv12I GWGCWC 1 cut(s) 829
BbvI GCAGC 5 cut(s) 145, 433, 548, 1432, 1448
BccI CCATC 9 cut(s) 352, 509, 578, 626, 641, 989, 1201, 1270, 1313
BciVI GTATCC 1 cut(s) 790
BclI TGATCA 1 cut(s) 1093
BcoDI GTCTC 3 cut(s) 525, 714, 751
BfaI CTAG 2 cut(s) 630, 638
BfrI CTTAAG 2 cut(s) 163, 331
BfuAI ACCTGC 2 cut(s) 428, 1439
BfuI GTATCC 1 cut(s) 790
BisI GCNGC 5 cut(s) 159, 447, 537, 1421, 1437
BlsI GCNGC 5 cut(s) 160, 448, 538, 1422, 1438
Bme18I GGWCC 1 cut(s) 651
BmeT110I CYCGRG 1 cut(s) 1155
BmgT120I GGNCC 1 cut(s) 651
BmiI GGNNCC 3 cut(s) 264, 652, 653
BmrI ACTGGG 2 cut(s) 225, 607
BmsI GCATC 3 cut(s) 1068, 1189, 1571
BmuI ACTGGG 2 cut(s) 225, 607
BpiI GAAGAC 1 cut(s) 462
BpmI CTGGAG 1 cut(s) 1436
BpuEI CTTGAG 1 cut(s) 1399
BsaJI CCNNGG 1 cut(s) 420
BsaXI ACNNNNNCTCC 4 cut(s) 731, 761, 1306, 1336
Bsc4I CCNNNNNNNGG 1 cut(s) 892
Bse1I ACTGG 2 cut(s) 231, 602
BseDI CCNNGG 1 cut(s) 420
BseGI GGATG 2 cut(s) 1083, 1096
BseLI CCNNNNNNNGG 1 cut(s) 892
BseNI ACTGG 2 cut(s) 231, 602
BseRI GAGGAG 2 cut(s) 21, 1507
BseXI GCAGC 5 cut(s) 145, 433, 548, 1432, 1448
BseYI CCCAGC 1 cut(s) 551
BsgI GTGCAG 1 cut(s) 1467
BsiHKAI GWGCWC 1 cut(s) 829
BsiHKCI CYCGRG 1 cut(s) 1155
BslFI GGGAC 3 cut(s) 251, 568, 637
BslI CCNNNNNNNGG 1 cut(s) 892
BsmAI GTCTC 3 cut(s) 525, 714, 751
BsmBI CGTCTC 1 cut(s) 525
BsmFI GGGAC 3 cut(s) 251, 568, 637
BsmI GAATGC 1 cut(s) 760
BsoBI CYCGRG 1 cut(s) 1155
Bsp1286I GDGCHC 2 cut(s) 829, 1241
Bsp143I GATC 4 cut(s) 880, 1093, 1105, 1396
Bsp19I CCATGG 1 cut(s) 420
BspACI CCGC 1 cut(s) 1352
BspHI TCATGA 2 cut(s) 1005, 1504
BspLI GGNNCC 3 cut(s) 264, 652, 653
BspMI ACCTGC 2 cut(s) 428, 1439
BspPI GGATC 3 cut(s) 888, 1100, 1391
BspTI CTTAAG 2 cut(s) 163, 331
BsrI ACTGG 2 cut(s) 231, 602
BssECI CCNNGG 1 cut(s) 420
BssMI GATC 4 cut(s) 880, 1093, 1105, 1396
BssNAI GTATAC 1 cut(s) 948
BssT1I CCWWGG 1 cut(s) 420
Bst1107I GTATAC 1 cut(s) 948
Bst4CI ACNGT 5 cut(s) 80, 134, 561, 1057, 1519
Bst6I CTCTTC 4 cut(s) 274, 315, 523, 1123
BstAFI CTTAAG 2 cut(s) 163, 331
BstAPI GCANNNNNTGC 1 cut(s) 805
BstDEI CTNAG 2 cut(s) 830, 1404
BstDSI CCRYGG 1 cut(s) 420
BstF5I GGATG 2 cut(s) 1083, 1096
BstKTI GATC 4 cut(s) 883, 1096, 1108, 1399
BstMAI GTCTC 3 cut(s) 525, 714, 751
BstMBI GATC 4 cut(s) 880, 1093, 1105, 1396
BstMWI GCNNNNNNNGC 9 cut(s) 60, 167, 182, 443, 764, 805, 980, 1420, 1445
BstV1I GCAGC 5 cut(s) 145, 433, 548, 1432, 1448
BstV2I GAAGAC 1 cut(s) 462
BstZ17I GTATAC 1 cut(s) 948
BsuI GTATCC 1 cut(s) 790
BtgI CCRYGG 1 cut(s) 420
BtsCI GGATG 2 cut(s) 1083, 1096
BtsIMutI CAGTG 1 cut(s) 557
BveI ACCTGC 2 cut(s) 428, 1439
CciI TCATGA 2 cut(s) 1005, 1504
Cfr13I GGNCC 1 cut(s) 651
CseI GACGC 1 cut(s) 542
Csp6I GTAC 2 cut(s) 1539, 1551
CviAII CATG 9 cut(s) 382, 421, 762, 800, 859, 932, 1006, 1111, 1505
CviQI GTAC 2 cut(s) 1539, 1551
DdeI CTNAG 2 cut(s) 830, 1404
DpnI GATC 4 cut(s) 882, 1095, 1107, 1398
DpnII GATC 4 cut(s) 880, 1093, 1105, 1396
Eam1104I CTCTTC 4 cut(s) 274, 315, 523, 1123
EarI CTCTTC 4 cut(s) 274, 315, 523, 1123
Eco130I CCWWGG 1 cut(s) 420
Eco24I GRGCYC 1 cut(s) 1241
Eco47I GGWCC 1 cut(s) 651
Eco57I CTGAAG 3 cut(s) 48, 296, 501
Eco88I CYCGRG 1 cut(s) 1155
EcoO109I RGGNCCY 1 cut(s) 651
EcoRI GAATTC 1 cut(s) 1212
EcoT14I CCWWGG 1 cut(s) 420
EcoT22I ATGCAT 1 cut(s) 1204
EcoT38I GRGCYC 1 cut(s) 1241
ErhI CCWWGG 1 cut(s) 420
Esp3I CGTCTC 1 cut(s) 525
FaeI CATG 9 cut(s) 385, 424, 765, 803, 862, 935, 1009, 1114, 1508
FalI AAGNNNNNCTT 2 cut(s) 396, 428
FaqI GGGAC 3 cut(s) 251, 568, 637
FatI CATG 9 cut(s) 381, 420, 761, 799, 858, 931, 1005, 1110, 1504
FauNDI CATATG 2 cut(s) 988, 1246
FbaI TGATCA 1 cut(s) 1093
FblI GTMKAC 1 cut(s) 947
Fnu4HI GCNGC 5 cut(s) 159, 447, 537, 1421, 1437
FokI GGATG 2 cut(s) 1083, 1090
FriOI GRGCYC 1 cut(s) 1241
Fsp4HI GCNGC 5 cut(s) 159, 447, 537, 1421, 1437
FspBI CTAG 2 cut(s) 630, 638
GluI GCNGC 5 cut(s) 159, 447, 537, 1421, 1437
GsaI CCCAGC 1 cut(s) 555
GsuI CTGGAG 1 cut(s) 1436
HgaI GACGC 1 cut(s) 542
Hin1II CATG 9 cut(s) 385, 424, 765, 803, 862, 935, 1009, 1114, 1508
HincII GTYRAC 1 cut(s) 739
HindII GTYRAC 1 cut(s) 739
HindIII AAGCTT 3 cut(s) 46, 624, 1358
HinfI GANTC 8 cut(s) 92, 239, 356, 362, 385, 602, 614, 728
HphI GGTGA 7 cut(s) 264, 464, 974, 1004, 1010, 1082, 1406
Hpy166II GTNNAC 2 cut(s) 739, 948
Hpy188I TCNGA 6 cut(s) 97, 125, 315, 361, 481, 1294
Hpy188III TCNNGA 7 cut(s) 396, 611, 638, 1006, 1100, 1378, 1505
Hpy8I GTNNAC 2 cut(s) 739, 948
HpyAV CCTTC 9 cut(s) 23, 120, 398, 399, 665, 931, 1061, 1141, 1482
HpyCH4III ACNGT 5 cut(s) 80, 134, 561, 1057, 1519
HpyCH4IV ACGT 2 cut(s) 823, 1568
HpyCH4V TGCA 7 cut(s) 63, 339, 430, 506, 1202, 1276, 1448
HpyF10VI GCNNNNNNNGC 9 cut(s) 60, 167, 182, 443, 764, 805, 980, 1420, 1445
HpyF3I CTNAG 2 cut(s) 830, 1404
HpySE526I ACGT 2 cut(s) 823, 1568
Hsp92II CATG 9 cut(s) 385, 424, 765, 803, 862, 935, 1009, 1114, 1508
KflI GGGWCCC 1 cut(s) 651
Ksp22I TGATCA 1 cut(s) 1093
Kzo9I GATC 4 cut(s) 880, 1093, 1105, 1396
LmnI GCTCC 3 cut(s) 443, 763, 1417
Lsp1109I GCAGC 5 cut(s) 145, 433, 548, 1432, 1448
LweI GCATC 3 cut(s) 1068, 1189, 1571
MaeI CTAG 2 cut(s) 630, 638
MaeII ACGT 2 cut(s) 823, 1568
MaeIII GTNAC 4 cut(s) 962, 1150, 1172, 1513
MalI GATC 4 cut(s) 882, 1095, 1107, 1398
MboI GATC 4 cut(s) 880, 1093, 1105, 1396
MfeI CAATTG 1 cut(s) 1441
MhlI GDGCHC 2 cut(s) 829, 1241
MlyI GAGTC 2 cut(s) 233, 394
MmeI TCCRAC 1 cut(s) 270
MnlI CCTC 9 cut(s) 82, 277, 827, 871, 1014, 1342, 1399, 1485, 1488
Mph1103I ATGCAT 1 cut(s) 1204
MroXI GAANNNNTTC 4 cut(s) 79, 225, 408, 699
MseI TTAA 9 cut(s) 21, 164, 332, 414, 522, 585, 687, 954, 1469
MslI CAYNNNNRTG 4 cut(s) 425, 1101, 1509, 1567
MspA1I CMGCKG 1 cut(s) 539
MspCI CTTAAG 2 cut(s) 163, 331
MunI CAATTG 1 cut(s) 1441
Mva1269I GAATGC 1 cut(s) 760
MwoI GCNNNNNNNGC 9 cut(s) 60, 167, 182, 443, 764, 805, 980, 1420, 1445
NcoI CCATGG 1 cut(s) 420
NdeI CATATG 2 cut(s) 988, 1246
NdeII GATC 4 cut(s) 880, 1093, 1105, 1396
NlaIII CATG 9 cut(s) 385, 424, 765, 803, 862, 935, 1009, 1114, 1508
NlaIV GGNNCC 3 cut(s) 264, 652, 653
NmeAIII GCCGAG 1 cut(s) 995
NmuCI GTSAC 2 cut(s) 962, 1150
NsiI ATGCAT 1 cut(s) 1204
PaeR7I CTCGAG 1 cut(s) 1155
PagI TCATGA 2 cut(s) 1005, 1504
PaqCI CACCTGC 1 cut(s) 428
PctI GAATGC 1 cut(s) 760
PdmI GAANNNNTTC 4 cut(s) 79, 225, 408, 699
PfeI GAWTC 6 cut(s) 92, 356, 362, 602, 614, 728
PflFI GACNNNGTC 1 cut(s) 743
PkrI GCNGC 5 cut(s) 160, 448, 538, 1422, 1438
PleI GAGTC 2 cut(s) 233, 393
PpsI GAGTC 2 cut(s) 233, 393
PpuMI RGGWCCY 1 cut(s) 651
PshBI ATTAAT 1 cut(s) 1469
Psp5II RGGWCCY 1 cut(s) 651
PspFI CCCAGC 1 cut(s) 551
PspN4I GGNNCC 3 cut(s) 264, 652, 653
PspPI GGNCC 1 cut(s) 651
PspPPI RGGWCCY 1 cut(s) 651
PspXI VCTCGAGB 1 cut(s) 1155
PsyI GACNNNGTC 1 cut(s) 743
PvuII CAGCTG 1 cut(s) 539
RsaI GTAC 2 cut(s) 1540, 1552
RsaNI GTAC 2 cut(s) 1539, 1551
RseI CAYNNNNRTG 4 cut(s) 425, 1101, 1509, 1567
SaqAI TTAA 9 cut(s) 21, 164, 332, 414, 522, 585, 687, 954, 1469
SatI GCNGC 5 cut(s) 159, 447, 537, 1421, 1437
Sau3AI GATC 4 cut(s) 880, 1093, 1105, 1396
Sau96I GGNCC 1 cut(s) 651
SchI GAGTC 2 cut(s) 233, 394
SduI GDGCHC 2 cut(s) 829, 1241
SfaNI GCATC 3 cut(s) 1068, 1189, 1571
Sfr274I CTCGAG 1 cut(s) 1155
SinI GGWCC 1 cut(s) 651
SlaI CTCGAG 1 cut(s) 1155
SmiMI CAYNNNNRTG 4 cut(s) 425, 1101, 1509, 1567
SmlI CTYRAG 4 cut(s) 163, 331, 1155, 1378
SmoI CTYRAG 4 cut(s) 163, 331, 1155, 1378
SsiI CCGC 1 cut(s) 1352
SspI AATATT 1 cut(s) 1477
SspMI CTAG 2 cut(s) 630, 638
StyI CCWWGG 1 cut(s) 420
TaaI ACNGT 5 cut(s) 80, 134, 561, 1057, 1519
TaiI ACGT 2 cut(s) 826, 1571
TaqI TCGA 2 cut(s) 819, 1156
TfiI GAWTC 6 cut(s) 92, 356, 362, 602, 614, 728
Tru1I TTAA 9 cut(s) 21, 164, 332, 414, 522, 585, 687, 954, 1469
Tru9I TTAA 9 cut(s) 21, 164, 332, 414, 522, 585, 687, 954, 1469
TscAI CASTG 1 cut(s) 564
TseFI GTSAC 2 cut(s) 962, 1150
TseI GCWGC 5 cut(s) 158, 446, 536, 1420, 1436
Tsp45I GTSAC 2 cut(s) 962, 1150
TspDTI ATGAA 8 cut(s) 114, 120, 240, 579, 780, 994, 1022, 1487
TspGWI ACGGA 1 cut(s) 740
TspRI CASTG 1 cut(s) 564
Tth111I GACNNNGTC 1 cut(s) 743
Vha464I CTTAAG 2 cut(s) 163, 331
VpaK11BI GGWCC 1 cut(s) 651
VspI ATTAAT 1 cut(s) 1469
XapI RAATTY 2 cut(s) 711, 1212
XbaI TCTAGA 1 cut(s) 637
XcmI CCANNNNNNNNNTGG 1 cut(s) 1117
XhoI CTCGAG 1 cut(s) 1155
XmiI GTMKAC 1 cut(s) 947
XmnI GAANNNNTTC 4 cut(s) 79, 225, 408, 699
XspI CTAG 2 cut(s) 630, 638
Zsp2I ATGCAT 1 cut(s) 1204
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.