Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0009286.1

Orthogroup ID

OG0008027

Physical Location & Seq

Genomic Coordinates Reverse (-)

17677 .. 19825

Gene Structure 2149 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0009286.1_g000005.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1500 bp

atgattaaacctgaaggagaacttaaagtaagctttggttatcaatgcagtagtgacagagtcgattcttgtgaggcttccagtggatatgaaatcctgcctgacctccgaaggaacagtagtttctcttgcttgtctggagctgcgttaagtgccaatgccactctggcaaacactaatatctgcaatggtttgataggggaagaaatacttcctagttgggactcccctaattcatttcgtaaggtaccctcttcgccaaggttggatatattatcatcttctcttcagagtagtatgtcaaacttaagttgcagtccatctacacccgagtctgattcttacttgatgaaatccatgagtcctacttccagaggtgaaggttttctcaattccatggaagtacaagtggcaggtggagctgctggtgaagacagggtccaagcggtttgttctgaagaaaatgggtggctgtattgtgcaatatacgatggctttaatggaagagacgcagctgattttctggctgggacactatatgaaaccattgtattttactttaattcattagactgggaatcaaatcaggaatccatcaatgcttctaaagggctaaatattgatgggtctcgtccatttattgaagatgatagtaatattgaaaatatctccaaggatgcttcatctactgacgtagaaatgtcaactgattcattcaggcatggggtacttgataacctacaacgagctcttagtcaggccgagaatgattttctatacatggttgagcaggaaatggaggatcgtcctgatttggtttccgttgggtcttgtgttttagttgtccttcttcacgggaatgatttgtatacacttaatttaggtgacagccgggctgtgttggcaacacttggtgatggtgatttcatgaatgggagtgagagactgaaagctatccagctcactgaaagtcatacggttgatgttgaagttgaaagaatgcgagttttgtgtgatcatcctgatgaccccatgtccattgtggctggaaaagtaaaagggaaattgaaggtcactcgagcttttggagttggttacttgaaaaagaaaaaactgaatgatgcattgatggggattcttcaagttcgtaatctaataagcccaccatatgtttctactcaaccatcattgagcgtgcgtagaatatcaaagtcggatcgatttgtcatagttgcaagtgatggtttgtttgacttttttaccaatgacgaggcagtaaagcttgtccattcctatatcttgagcaacccctctggtgatccatccaagtttctgctggagcagcttgtagtgaaagcagccaactgtgcaggattcagtatggaagaactaatgaatataccagcggggaggaggaggaagtatcatgatgatgtaactgtaattgtggttattcttggtacaaatcagcgcaccacaaaggcatcaacttgtgtgtaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PP2C

Protein Analysis

499

Amino Acids

54.5

Weight (kDa)

4.78

Isoelectric Point (pI)

48.92

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008027)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G16560 AT3G16560 AT3G16560 AT3G16560
fragaria_vesca	FvH4_4g17950 FvH4_4g17950 FvH4_4g17950 FvH4_4g17950 FvH4_4g17950
malus_domestica	MD13G1169100.v1.1 MD16G1170400.v1.1
prunus_persica	Prupe.1G137500_v2.0.a1
pyrus_communis	pycom13g14470 pycom16g14280
rosa_chinensis	RchiOBHm_Chr4g0422121
rosa_laevigata	RLG00000007634
rosa_multiflora	Rmu_sc0009286.1_g000005
rosa_roxburghii	Rroxscaffold_5G00364200
rosa_rugosa	Rorug04G0177500
rosa_samantha	Rh4AG237000 Rh4BG239800 Rh4CG251700 Rh4DG235900
rosa_wichuraiana	Rw4G020500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	404
Acc36I	ACCTGC	1 cut(s)	404
Acc65I	GGTACC	1 cut(s)	247
AccB1I	GGYRCC	1 cut(s)	247
AccI	GTMKAC	1 cut(s)	869
AciI	CCGC	2 cut(s)	446, 1406
AclWI	GGATC	3 cut(s)	810, 1224, 1313
AcuI	CTGAAG	3 cut(s)	33, 272, 477
AdeI	CACNNNGTG	1 cut(s)	914
AfaI	GTAC	4 cut(s)	249, 405, 729, 1462
AflII	CTTAAG	1 cut(s)	307
AgsI	TTSAA	7 cut(s)	644, 662, 989, 995, 1069, 1102, 1142
AhdI	GACNNNNNGTC	1 cut(s)	1033
Alw21I	GWGCWC	1 cut(s)	751
Alw26I	GTCTC	3 cut(s)	501, 633, 937
AlwI	GGATC	3 cut(s)	810, 1224, 1313
Ama87I	CYCGRG	2 cut(s)	329, 1077
AoxI	GGCC	1 cut(s)	759
ApeKI	GCWGC	5 cut(s)	143, 422, 512, 1342, 1358
Asp700I	GAANNNNTTC	2 cut(s)	210, 384
Asp718I	GGTACC	1 cut(s)	247
AspLEI	GCGC	1 cut(s)	1473
AspS9I	GGNCC	1 cut(s)	439
AsuC2I	CCSGG	1 cut(s)	893
AsuHPI	GGTGA	6 cut(s)	389, 440, 896, 926, 932, 1328
AvaI	CYCGRG	2 cut(s)	329, 1077
AvaII	GGWCC	1 cut(s)	439
BanI	GGYRCC	1 cut(s)	247
BanII	GRGCYC	1 cut(s)	751
BbsI	GAAGAC	1 cut(s)	438
Bbv12I	GWGCWC	1 cut(s)	751
BbvI	GCAGC	5 cut(s)	130, 409, 524, 1354, 1370
BccI	CCATC	9 cut(s)	328, 485, 602, 617, 911, 1123, 1192, 1235, 1330
BclI	TGATCA	1 cut(s)	1015
BcnI	CCSGG	1 cut(s)	893
BcoDI	GTCTC	3 cut(s)	501, 633, 937
BfaI	CTAG	1 cut(s)	216
BfrI	CTTAAG	1 cut(s)	307
BfuAI	ACCTGC	1 cut(s)	404
BglI	GCCNNNNNGGC	1 cut(s)	167
BisI	GCNGC	5 cut(s)	144, 423, 513, 1343, 1359
BlsI	GCNGC	5 cut(s)	145, 424, 514, 1344, 1360
Bme1390I	CCNGG	1 cut(s)	893
Bme18I	GGWCC	1 cut(s)	439
BmeRI	GACNNNNNGTC	1 cut(s)	1033
BmeT110I	CYCGRG	2 cut(s)	329, 1077
BmgT120I	GGNCC	1 cut(s)	439
BmiI	GGNNCC	2 cut(s)	249, 440
BmrFI	CCNGG	1 cut(s)	893
BmrI	ACTGGG	1 cut(s)	583
BmsI	GCATC	3 cut(s)	667, 1111, 1493
BmuI	ACTGGG	1 cut(s)	583
BpiI	GAAGAC	1 cut(s)	438
BpmI	CTGGAG	2 cut(s)	159, 1358
BpuEI	CTTGAG	1 cut(s)	1321
BpuMI	CCSGG	1 cut(s)	893
Bsa29I	ATCGAT	1 cut(s)	1219
BsaI	GGTCTC	1 cut(s)	633
BsaJI	CCNNGG	3 cut(s)	260, 396, 672
Bse1I	ACTGG	2 cut(s)	81, 578
Bse3DI	GCAATG	1 cut(s)	193
BseCI	ATCGAT	1 cut(s)	1219
BseDI	CCNNGG	3 cut(s)	260, 396, 672
BseGI	GGATG	3 cut(s)	682, 1018, 1322
BseMI	GCAATG	1 cut(s)	193
BseNI	ACTGG	2 cut(s)	81, 578
BseRI	GAGGAG	2 cut(s)	1426, 1429
BseXI	GCAGC	5 cut(s)	130, 409, 524, 1354, 1370
BseYI	CCCAGC	1 cut(s)	527
BsgI	GTGCAG	1 cut(s)	1389
BshFI	GGCC	1 cut(s)	761
BshNI	GGYRCC	1 cut(s)	247
BshVI	ATCGAT	1 cut(s)	1219
BsiHKAI	GWGCWC	1 cut(s)	751
BsiHKCI	CYCGRG	2 cut(s)	329, 1077
BsiSI	CCGG	1 cut(s)	892
BslFI	GGGAC	2 cut(s)	236, 544
BsmAI	GTCTC	3 cut(s)	501, 633, 937
BsmBI	CGTCTC	1 cut(s)	501
BsmFI	GGGAC	2 cut(s)	236, 544
BsmI	GAATGC	1 cut(s)	1005
BsnI	GGCC	1 cut(s)	761
Bso31I	GGTCTC	1 cut(s)	633
BsoBI	CYCGRG	2 cut(s)	329, 1077
Bsp1286I	GDGCHC	1 cut(s)	751
Bsp143I	GATC	4 cut(s)	802, 1015, 1216, 1318
Bsp19I	CCATGG	1 cut(s)	396
BspACI	CCGC	2 cut(s)	446, 1406
BspANI	GGCC	1 cut(s)	761
BspDI	ATCGAT	1 cut(s)	1219
BspHI	TCATGA	2 cut(s)	927, 1426
BspLI	GGNNCC	2 cut(s)	249, 440
BspMI	ACCTGC	1 cut(s)	404
BspPI	GGATC	3 cut(s)	810, 1224, 1313
BspT107I	GGYRCC	1 cut(s)	247
BspTI	CTTAAG	1 cut(s)	307
BspTNI	GGTCTC	1 cut(s)	633
BsrDI	GCAATG	1 cut(s)	193
BsrI	ACTGG	2 cut(s)	81, 578
BssECI	CCNNGG	3 cut(s)	260, 396, 672
BssMI	GATC	4 cut(s)	802, 1015, 1216, 1318
BssNAI	GTATAC	1 cut(s)	870
BssT1I	CCWWGG	3 cut(s)	260, 396, 672
Bst1107I	GTATAC	1 cut(s)	870
Bst4CI	ACNGT	4 cut(s)	119, 979, 1367, 1441
Bst6I	CTCTTC	3 cut(s)	259, 291, 499
BstAFI	CTTAAG	1 cut(s)	307
BstC8I	GCNNGC	1 cut(s)	1196
BstDEI	CTNAG	1 cut(s)	752
BstDSI	CCRYGG	1 cut(s)	396
BstF5I	GGATG	3 cut(s)	682, 1018, 1322
BstHHI	GCGC	1 cut(s)	1473
BstKTI	GATC	4 cut(s)	805, 1018, 1219, 1321
BstMAI	GTCTC	3 cut(s)	501, 633, 937
BstMBI	GATC	4 cut(s)	802, 1015, 1216, 1318
BstMWI	GCNNNNNNNGC	6 cut(s)	152, 167, 419, 902, 1342, 1367
BstSCI	CCNGG	1 cut(s)	891
BstV1I	GCAGC	5 cut(s)	130, 409, 524, 1354, 1370
BstV2I	GAAGAC	1 cut(s)	438
BstZ17I	GTATAC	1 cut(s)	870
Bsu15I	ATCGAT	1 cut(s)	1219
BsuRI	GGCC	1 cut(s)	761
BsuTUI	ATCGAT	1 cut(s)	1219
BtgI	CCRYGG	1 cut(s)	396
BtsCI	GGATG	3 cut(s)	682, 1018, 1322
BtsIMutI	CAGTG	2 cut(s)	88, 963
BveI	ACCTGC	1 cut(s)	404
Cac8I	GCNNGC	1 cut(s)	1196
CciI	TCATGA	2 cut(s)	927, 1426
CfoI	GCGC	1 cut(s)	1473
Cfr13I	GGNCC	1 cut(s)	439
ClaI	ATCGAT	1 cut(s)	1219
CseI	GACGC	1 cut(s)	518
Csp6I	GTAC	4 cut(s)	248, 404, 728, 1461
CviAII	CATG	7 cut(s)	358, 397, 722, 781, 928, 1033, 1427
CviQI	GTAC	4 cut(s)	248, 404, 728, 1461
DdeI	CTNAG	1 cut(s)	752
DpnI	GATC	4 cut(s)	804, 1017, 1218, 1320
DpnII	GATC	4 cut(s)	802, 1015, 1216, 1318
DraIII	CACNNNGTG	1 cut(s)	914
DriI	GACNNNNNGTC	1 cut(s)	1033
Eam1104I	CTCTTC	3 cut(s)	259, 291, 499
Eam1105I	GACNNNNNGTC	1 cut(s)	1033
EarI	CTCTTC	3 cut(s)	259, 291, 499
Ecl136II	GAGCTC	1 cut(s)	749
Eco130I	CCWWGG	3 cut(s)	260, 396, 672
Eco24I	GRGCYC	1 cut(s)	751
Eco31I	GGTCTC	1 cut(s)	633
Eco47I	GGWCC	1 cut(s)	439
Eco53kI	GAGCTC	1 cut(s)	749
Eco57I	CTGAAG	3 cut(s)	33, 272, 477
Eco88I	CYCGRG	2 cut(s)	329, 1077
EcoICRI	GAGCTC	1 cut(s)	749
EcoT14I	CCWWGG	3 cut(s)	260, 396, 672
EcoT22I	ATGCAT	1 cut(s)	1126
EcoT38I	GRGCYC	1 cut(s)	751
ErhI	CCWWGG	3 cut(s)	260, 396, 672
Esp3I	CGTCTC	1 cut(s)	501
FaeI	CATG	7 cut(s)	361, 400, 725, 784, 931, 1036, 1430
FalI	AAGNNNNNCTT	3 cut(s)	38, 195, 227
FaqI	GGGAC	2 cut(s)	236, 544
FatI	CATG	7 cut(s)	357, 396, 721, 780, 927, 1032, 1426
FauI	CCCGC	1 cut(s)	1399
FauNDI	CATATG	1 cut(s)	1168
FbaI	TGATCA	1 cut(s)	1015
FblI	GTMKAC	1 cut(s)	869
Fnu4HI	GCNGC	5 cut(s)	144, 423, 513, 1343, 1359
FokI	GGATG	3 cut(s)	689, 1005, 1309
FriOI	GRGCYC	1 cut(s)	751
Fsp4HI	GCNGC	5 cut(s)	144, 423, 513, 1343, 1359
FspBI	CTAG	1 cut(s)	216
GlaI	GCGC	1 cut(s)	1472
GluI	GCNGC	5 cut(s)	144, 423, 513, 1343, 1359
GsaI	CCCAGC	1 cut(s)	531
GsuI	CTGGAG	2 cut(s)	159, 1358
HaeIII	GGCC	1 cut(s)	761
HapII	CCGG	1 cut(s)	892
HgaI	GACGC	1 cut(s)	518
HhaI	GCGC	1 cut(s)	1473
Hin1II	CATG	7 cut(s)	361, 400, 725, 784, 931, 1036, 1430
Hin6I	GCGC	1 cut(s)	1471
HinP1I	GCGC	1 cut(s)	1471
HincII	GTYRAC	1 cut(s)	705
HindII	GTYRAC	1 cut(s)	705
HindIII	AAGCTT	2 cut(s)	31, 1280
HpaII	CCGG	1 cut(s)	892
HphI	GGTGA	6 cut(s)	389, 440, 896, 926, 932, 1328
Hpy166II	GTNNAC	2 cut(s)	705, 870
Hpy188I	TCNGA	5 cut(s)	110, 291, 337, 457, 1216
Hpy188III	TCNNGA	8 cut(s)	138, 372, 587, 809, 928, 1022, 1300, 1427
Hpy8I	GTNNAC	2 cut(s)	705, 870
HpyAV	CCTTC	5 cut(s)	8, 105, 374, 857, 1063
HpyCH4III	ACNGT	4 cut(s)	119, 979, 1367, 1441
HpyCH4IV	ACGT	1 cut(s)	693
HpyCH4V	TGCA	7 cut(s)	48, 186, 315, 482, 1124, 1235, 1370
HpyF10VI	GCNNNNNNNGC	6 cut(s)	152, 167, 419, 902, 1342, 1367
HpyF3I	CTNAG	1 cut(s)	752
HpySE526I	ACGT	1 cut(s)	693
Hsp92II	CATG	7 cut(s)	361, 400, 725, 784, 931, 1036, 1430
HspAI	GCGC	1 cut(s)	1471
KpnI	GGTACC	1 cut(s)	251
Ksp22I	TGATCA	1 cut(s)	1015
Kzo9I	GATC	4 cut(s)	802, 1015, 1216, 1318
LmnI	GCTCC	3 cut(s)	140, 419, 1339
Lsp1109I	GCAGC	5 cut(s)	130, 409, 524, 1354, 1370
LweI	GCATC	3 cut(s)	667, 1111, 1493
MaeI	CTAG	1 cut(s)	216
MaeII	ACGT	1 cut(s)	693
MaeIII	GTNAC	5 cut(s)	53, 884, 1072, 1094, 1435
MalI	GATC	4 cut(s)	804, 1017, 1218, 1320
MboI	GATC	4 cut(s)	802, 1015, 1216, 1318
MhlI	GDGCHC	1 cut(s)	751
MluCI	AATT	6 cut(s)	232, 391, 562, 877, 1064, 1443
MlyI	GAGTC	4 cut(s)	69, 218, 341, 370
MmeI	TCCRAC	2 cut(s)	246, 1194
Mph1103I	ATGCAT	1 cut(s)	1126
MroXI	GAANNNNTTC	2 cut(s)	210, 384
MseI	TTAA	7 cut(s)	6, 24, 149, 308, 498, 561, 876
MslI	CAYNNNNRTG	3 cut(s)	858, 1023, 1431
MspA1I	CMGCKG	2 cut(s)	515, 1406
MspCI	CTTAAG	1 cut(s)	307
MspI	CCGG	1 cut(s)	892
MspR9I	CCNGG	1 cut(s)	893
Mva1269I	GAATGC	1 cut(s)	1005
MwoI	GCNNNNNNNGC	6 cut(s)	152, 167, 419, 902, 1342, 1367
NciI	CCSGG	1 cut(s)	893
NcoI	CCATGG	1 cut(s)	396
NdeI	CATATG	1 cut(s)	1168
NdeII	GATC	4 cut(s)	802, 1015, 1216, 1318
NlaIII	CATG	7 cut(s)	361, 400, 725, 784, 931, 1036, 1430
NlaIV	GGNNCC	2 cut(s)	249, 440
NmeAIII	GCCGAG	1 cut(s)	787
NmuCI	GTSAC	3 cut(s)	53, 884, 1072
NsiI	ATGCAT	1 cut(s)	1126
PaeR7I	CTCGAG	1 cut(s)	1077
PagI	TCATGA	2 cut(s)	927, 1426
PaqCI	CACCTGC	1 cut(s)	404
PctI	GAATGC	1 cut(s)	1005
PdmI	GAANNNNTTC	2 cut(s)	210, 384
PfeI	GAWTC	7 cut(s)	65, 338, 578, 590, 710, 1135, 1374
PflFI	GACNNNGTC	2 cut(s)	59, 437
PkrI	GCNGC	5 cut(s)	145, 424, 514, 1344, 1360
PleI	GAGTC	4 cut(s)	68, 218, 340, 369
PpsI	GAGTC	4 cut(s)	68, 218, 340, 369
Psp124BI	GAGCTC	1 cut(s)	751
PspFI	CCCAGC	1 cut(s)	527
PspN4I	GGNNCC	2 cut(s)	249, 440
PspPI	GGNCC	1 cut(s)	439
PspXI	VCTCGAGB	1 cut(s)	1077
PsyI	GACNNNGTC	2 cut(s)	59, 437
PvuII	CAGCTG	1 cut(s)	515
RsaI	GTAC	4 cut(s)	249, 405, 729, 1462
RsaNI	GTAC	4 cut(s)	248, 404, 728, 1461
RseI	CAYNNNNRTG	3 cut(s)	858, 1023, 1431
SacI	GAGCTC	1 cut(s)	751
SaqAI	TTAA	7 cut(s)	6, 24, 149, 308, 498, 561, 876
SatI	GCNGC	5 cut(s)	144, 423, 513, 1343, 1359
Sau3AI	GATC	4 cut(s)	802, 1015, 1216, 1318
Sau96I	GGNCC	1 cut(s)	439
SchI	GAGTC	4 cut(s)	69, 218, 341, 370
ScrFI	CCNGG	1 cut(s)	893
SduI	GDGCHC	1 cut(s)	751
SfaNI	GCATC	3 cut(s)	667, 1111, 1493
Sfr274I	CTCGAG	1 cut(s)	1077
SinI	GGWCC	1 cut(s)	439
SlaI	CTCGAG	1 cut(s)	1077
SmiMI	CAYNNNNRTG	3 cut(s)	858, 1023, 1431
SmlI	CTYRAG	3 cut(s)	307, 1077, 1300
SmoI	CTYRAG	3 cut(s)	307, 1077, 1300
Sse9I	AATT	6 cut(s)	232, 391, 562, 877, 1064, 1443
SsiI	CCGC	2 cut(s)	446, 1406
SspI	AATATT	2 cut(s)	619, 658
SspMI	CTAG	1 cut(s)	216
SstI	GAGCTC	1 cut(s)	751
StyD4I	CCNGG	1 cut(s)	891
StyI	CCWWGG	3 cut(s)	260, 396, 672
TaaI	ACNGT	4 cut(s)	119, 979, 1367, 1441
TaiI	ACGT	1 cut(s)	696
TaqI	TCGA	3 cut(s)	63, 1078, 1219
TasI	AATT	6 cut(s)	232, 391, 562, 877, 1064, 1443
TatI	WGTACW	1 cut(s)	403
TfiI	GAWTC	7 cut(s)	65, 338, 578, 590, 710, 1135, 1374
Tru1I	TTAA	7 cut(s)	6, 24, 149, 308, 498, 561, 876
Tru9I	TTAA	7 cut(s)	6, 24, 149, 308, 498, 561, 876
TscAI	CASTG	2 cut(s)	88, 970
TseFI	GTSAC	3 cut(s)	53, 884, 1072
TseI	GCWGC	5 cut(s)	143, 422, 512, 1342, 1358
Tsp45I	GTSAC	3 cut(s)	53, 884, 1072
TspGWI	ACGGA	1 cut(s)	811
TspRI	CASTG	2 cut(s)	88, 970
Tth111I	GACNNNGTC	2 cut(s)	59, 437
Vha464I	CTTAAG	1 cut(s)	307
VpaK11BI	GGWCC	1 cut(s)	439
XcmI	CCANNNNNNNNNTGG	3 cut(s)	163, 1039, 1333
XhoI	CTCGAG	1 cut(s)	1077
XmiI	GTMKAC	1 cut(s)	869
XmnI	GAANNNNTTC	2 cut(s)	210, 384
XspI	CTAG	1 cut(s)	216
Zsp2I	ATGCAT	1 cut(s)	1126

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.