Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000004

Orthogroup ID

OG0002436

Physical Location & Seq

Genomic Coordinates Forward (+)

31142980 .. 31161455

Gene Structure 18476 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug04G0177500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1383 bp

ATGTGCGTCAATTACGACGTGAAATTGTTGTGGGCATATATTGGTTTGCGAATGGTCATTGATGTCTTTTATGTTGTTGACATAATCATTTTCTTGTGCGGAATTTTTAAGAAACGTAAGGGTAAGAAACTTTGGGCATGCTGGAAGTCAAGAAATGATCAAAAGATGGTACTTCCTTGGAAACAAGTAATCAAAAGATGGTACTCCGTTCTGTTTCCCATTCTACCTGGTATTTTGGTTGCCCTTCCCATTCCAGAGGTACTCCTACTCTCTACATTAGAGATATATTGGGATCCTACTTATGTTATTTTTATTTTCACCCCCATTCAATACATGCTACGGATCTTTCTTATCTATGGATCACAAAGGTTGCGTTTTATGAAAAAGACTACGACAGAAAGATGGCTTAAAGCTTTCTTGGCTTTTCTGCCATTCATCCTTGCTTCTCATTTATTCGGAGCCTTGTGGTATCGTCTTGCTATACAAAGACAAATAGATTGTTGGAAGCCACATTGTGAAACTATTCTAGGAAATACATGTAGCAAATTGGATGATTTTGACTGTGAATACGGCTATGGTTCGCAAGTGAACAGCTCACTTTTACAAGAATTGTGCCCTACAAAAAATGAAAATCAAAAAGTCTTCGACTTTGGTATATATTTTTATGCTCTTCAGTCTAATGTGACAAGTTCATCAAATCTTCCACGCAGAATGTCACAATCTTTTTGGTGGGCGCTCCGAAATCTAAGTTCTTTTGGTTCAAACCTATTTACCAGCATGCAAGTCTTGGAGATCATCTTTTCAGTGGCGATATCTATAAGTGGCATGGCGCTATTTTTAGTATATCTCAACGCAAGAGTGCAGGTGCCAATGCTTGAGAATTTGAATGAAAAAATGTTGAAAGTGATTTGTGAGCATCTAAAGCCAGTCATTTACATCGAAGATAACTACATTGTTCATGAGGGGAAACCACTTGGGATGATGCTCTTCATCACGCAAGGCATCGCATGGACTTACACAGTTAGTAATAACGTTGGTGCAGAAACAAGCTATGGTTCTTCAAGCAATAAGTGGTTAAAGCGAGGTGATTATTATGGAGAAGAGCTTTTGAAGTGGGCATTCAAATGTCCCTCTTATTCTGACTTACCCATATCAACTAGAACTGTTATGTCCCAAGAAAAGATCGAAGCGTTTGCTCTTAGGGCTAGCGACCTGAAAAACATTGTGTCTAAATATTGGTGGCATTTTACTAGGGAGGTATGTCAAGAAGAGCTCGAGCAGTGGGAGAATTCAGCAGCTTCTTCGATACAAGCAGCCTGGCGCAACCGTCTGGCAAGAGTTAGGCAATCAAATGGTTGGGACAAATTTACAGTAGCGTACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HMA

Protein Analysis

460

Amino Acids

53.77

Weight (kDa)

9.1

Isoelectric Point (pI)

43.35

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002436)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G15790 AT4G15790
fragaria_vesca	FvH4_4g17930 FvH4_4g17930 FvH4_4g17940 FvH4_4g17940 FvH4_4g17940
malus_domestica	MD13G1169200.v1.1 MD13G1169300.v1.1 MD16G1170500.v1.1
prunus_persica	Prupe.1G137600_v2.0.a1 Prupe.1G137600_v2.0.a1 Prupe.1G137600_v2.0.a1 Prupe.1G137900_v2.0.a1
pyrus_communis	pycom13g14490 pycom16g14290
rosa_chinensis	RchiOBHm_Chr4g0422101 RchiOBHm_Chr4g0422111
rosa_laevigata	RLG00000007635
rosa_multiflora	Rmu_sc0009286.1_g000003 Rmu_sc0009286.1_g000004
rosa_roxburghii	Rroxscaffold_3G00224970 Rroxscaffold_4G00330840 Rroxscaffold_5G00364180 Rroxscaffold_5G00364190 Rroxscaffold_6G00405940
rosa_rugosa	Rorug04G0177200 Rorug04G0177300 Rorug04G0177400 Rorug04G0177500
rosa_samantha	Rh4AG236800 Rh4AG236900 Rh4BG239600 Rh4BG239700 Rh4CG251500 Rh4CG251600 Rh4DG235700 Rh4DG235800 Rh6BG107100
rosa_wichuraiana	Rw4G020480 Rw4G020490

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	853
Acc36I	ACCTGC	1 cut(s)	853
AccB1I	GGYRCC	1 cut(s)	865
AciI	CCGC	1 cut(s)	99
AclI	AACGTT	1 cut(s)	1032
AclWI	GGATC	4 cut(s)	287, 300, 350, 367
AcsI	RAATTY	4 cut(s)	102, 880, 1288, 1364
AcuI	CTGAAG	1 cut(s)	656
AdeI	CACNNNGTG	1 cut(s)	515
AfaI	GTAC	4 cut(s)	171, 203, 261, 1379
AflIII	ACRYGT	1 cut(s)	536
AgsI	TTSAA	7 cut(s)	329, 762, 886, 901, 1062, 1111, 1123
AjiI	CACGTC	1 cut(s)	19
AjnI	CCWGG	2 cut(s)	226, 1316
AluBI	AGCT	6 cut(s)	413, 594, 1050, 1105, 1273, 1298
AluI	AGCT	6 cut(s)	413, 594, 1050, 1105, 1273, 1298
Alw21I	GWGCWC	1 cut(s)	1275
AlwI	GGATC	4 cut(s)	287, 300, 350, 367
Ama87I	CYCGRG	1 cut(s)	1274
ApeKI	GCWGC	2 cut(s)	1295, 1313
ApoI	RAATTY	4 cut(s)	102, 880, 1288, 1364
Asp700I	GAANNNNTTC	1 cut(s)	522
AspLEI	GCGC	3 cut(s)	736, 832, 1323
AsuHPI	GGTGA	2 cut(s)	310, 1097
AsuNHI	GCTAGC	1 cut(s)	1205
AvaI	CYCGRG	1 cut(s)	1274
BaeGI	GKGCMC	1 cut(s)	617
BamHI	GGATCC	1 cut(s)	292
BanI	GGYRCC	1 cut(s)	865
BanII	GRGCYC	1 cut(s)	1275
BbsI	GAAGAC	1 cut(s)	634
Bbv12I	GWGCWC	1 cut(s)	1275
BbvI	GCAGC	2 cut(s)	1307, 1325
BccI	CCATC	3 cut(s)	160, 192, 396
BceAI	ACGGC	1 cut(s)	586
BcgI	CGANNNNNNTGC	4 cut(s)	1175, 1209, 1284, 1318
BciT130I	CCWGG	2 cut(s)	228, 1318
BclI	TGATCA	1 cut(s)	157
BfaI	CTAG	4 cut(s)	527, 1158, 1206, 1251
BfoI	RGCGCY	2 cut(s)	737, 833
BfuAI	ACCTGC	1 cut(s)	853
BisI	GCNGC	2 cut(s)	1296, 1314
BlsI	GCNGC	2 cut(s)	1297, 1315
Bme1390I	CCNGG	2 cut(s)	228, 1318
BmeT110I	CYCGRG	1 cut(s)	1274
BmgBI	CACGTC	1 cut(s)	19
BmiI	GGNNCC	3 cut(s)	294, 460, 867
BmrFI	CCNGG	2 cut(s)	228, 1318
BmsI	GCATC	3 cut(s)	925, 972, 1011
BmtI	GCTAGC	1 cut(s)	1209
BpiI	GAAGAC	1 cut(s)	634
BpuEI	CTTGAG	1 cut(s)	896
BsaJI	CCNNGG	1 cut(s)	176
Bse1I	ACTGG	1 cut(s)	926
BseBI	CCWGG	2 cut(s)	228, 1318
BseDI	CCNNGG	1 cut(s)	176
BseGI	GGATG	3 cut(s)	435, 556, 984
BseNI	ACTGG	1 cut(s)	926
BseSI	GKGCMC	1 cut(s)	617
BseXI	GCAGC	2 cut(s)	1307, 1325
BsgI	GTGCAG	2 cut(s)	881, 1059
BshNI	GGYRCC	1 cut(s)	865
BsiHKAI	GWGCWC	1 cut(s)	1275
BsiHKCI	CYCGRG	1 cut(s)	1274
BslFI	GGGAC	3 cut(s)	1113, 1156, 1373
BsmFI	GGGAC	3 cut(s)	1113, 1156, 1373
BsmI	GAATGC	1 cut(s)	1118
BsoBI	CYCGRG	1 cut(s)	1274
Bsp1286I	GDGCHC	2 cut(s)	617, 1275
Bsp143I	GATC	6 cut(s)	157, 292, 342, 359, 792, 1182
BspACI	CCGC	1 cut(s)	99
BspHI	TCATGA	1 cut(s)	958
BspLI	GGNNCC	3 cut(s)	294, 460, 867
BspMI	ACCTGC	1 cut(s)	853
BspOI	GCTAGC	1 cut(s)	1209
BspPI	GGATC	4 cut(s)	287, 300, 350, 367
BspQI	GCTCTTC	4 cut(s)	675, 992, 1095, 1263
BspT107I	GGYRCC	1 cut(s)	865
BsrI	ACTGG	1 cut(s)	926
BssECI	CCNNGG	1 cut(s)	176
BssMI	GATC	6 cut(s)	157, 292, 342, 359, 792, 1182
BssT1I	CCWWGG	1 cut(s)	176
Bst2UI	CCWGG	2 cut(s)	228, 1318
Bst4CI	ACNGT	5 cut(s)	563, 1021, 1165, 1328, 1372
Bst6I	CTCTTC	4 cut(s)	675, 992, 1095, 1263
BstC8I	GCNNGC	3 cut(s)	139, 779, 1207
BstDEI	CTNAG	2 cut(s)	746, 1199
BstF5I	GGATG	3 cut(s)	435, 556, 984
BstH2I	RGCGCY	2 cut(s)	737, 833
BstHHI	GCGC	3 cut(s)	736, 832, 1323
BstKTI	GATC	6 cut(s)	160, 295, 345, 362, 795, 1185
BstMBI	GATC	6 cut(s)	157, 292, 342, 359, 792, 1182
BstMWI	GCNNNNNNNGC	3 cut(s)	419, 922, 1202
BstNI	CCWGG	2 cut(s)	228, 1318
BstNSI	RCATGY	4 cut(s)	141, 337, 540, 781
BstSCI	CCNGG	2 cut(s)	226, 1316
BstSLI	GKGCMC	1 cut(s)	617
BstV1I	GCAGC	2 cut(s)	1307, 1325
BstV2I	GAAGAC	1 cut(s)	634
BstX2I	RGATCY	2 cut(s)	292, 342
BstYI	RGATCY	2 cut(s)	292, 342
BtgZI	GCGATG	1 cut(s)	988
BtrI	CACGTC	1 cut(s)	19
BtsCI	GGATG	3 cut(s)	435, 556, 984
BtsI	GCAGTG	1 cut(s)	1286
BtsIMutI	CAGTG	2 cut(s)	810, 1286
BveI	ACCTGC	1 cut(s)	853
Cac8I	GCNNGC	3 cut(s)	139, 779, 1207
CciI	TCATGA	1 cut(s)	958
CfoI	GCGC	3 cut(s)	736, 832, 1323
CsiI	ACCWGGT	1 cut(s)	226
Csp6I	GTAC	4 cut(s)	170, 202, 260, 1378
CviAII	CATG	7 cut(s)	138, 334, 537, 778, 826, 959, 1008
CviQI	GTAC	4 cut(s)	170, 202, 260, 1378
DdeI	CTNAG	2 cut(s)	746, 1199
DpnI	GATC	6 cut(s)	159, 294, 344, 361, 794, 1184
DpnII	GATC	6 cut(s)	157, 292, 342, 359, 792, 1182
DraIII	CACNNNGTG	1 cut(s)	515
Eam1104I	CTCTTC	4 cut(s)	675, 992, 1095, 1263
EarI	CTCTTC	4 cut(s)	675, 992, 1095, 1263
Ecl136II	GAGCTC	1 cut(s)	1273
Eco130I	CCWWGG	1 cut(s)	176
Eco24I	GRGCYC	1 cut(s)	1275
Eco32I	GATATC	1 cut(s)	813
Eco53kI	GAGCTC	1 cut(s)	1273
Eco57I	CTGAAG	1 cut(s)	656
Eco88I	CYCGRG	1 cut(s)	1274
EcoICRI	GAGCTC	1 cut(s)	1273
EcoRI	GAATTC	1 cut(s)	1288
EcoRII	CCWGG	2 cut(s)	226, 1316
EcoRV	GATATC	1 cut(s)	813
EcoT14I	CCWWGG	1 cut(s)	176
EcoT38I	GRGCYC	1 cut(s)	1275
ErhI	CCWWGG	1 cut(s)	176
FaeI	CATG	7 cut(s)	141, 337, 540, 781, 829, 962, 1011
FaqI	GGGAC	3 cut(s)	1113, 1156, 1373
FatI	CATG	7 cut(s)	137, 333, 536, 777, 825, 958, 1007
FbaI	TGATCA	1 cut(s)	157
Fnu4HI	GCNGC	2 cut(s)	1296, 1314
FokI	GGATG	3 cut(s)	422, 563, 991
FriOI	GRGCYC	1 cut(s)	1275
Fsp4HI	GCNGC	2 cut(s)	1296, 1314
FspBI	CTAG	4 cut(s)	527, 1158, 1206, 1251
GlaI	GCGC	3 cut(s)	735, 831, 1322
GluI	GCNGC	2 cut(s)	1296, 1314
HaeII	RGCGCY	2 cut(s)	737, 833
HhaI	GCGC	3 cut(s)	736, 832, 1323
Hin1II	CATG	7 cut(s)	141, 337, 540, 781, 829, 962, 1011
Hin6I	GCGC	3 cut(s)	734, 830, 1321
HinP1I	GCGC	3 cut(s)	734, 830, 1321
HincII	GTYRAC	1 cut(s)	79
HindII	GTYRAC	1 cut(s)	79
HindIII	AAGCTT	1 cut(s)	411
HphI	GGTGA	2 cut(s)	310, 1097
Hpy166II	GTNNAC	2 cut(s)	79, 589
Hpy188I	TCNGA	3 cut(s)	458, 740, 1141
Hpy188III	TCNNGA	4 cut(s)	150, 254, 959, 1265
Hpy8I	GTNNAC	2 cut(s)	79, 589
Hpy99I	CGWCG	1 cut(s)	20
HpyAV	CCTTC	1 cut(s)	254
HpyCH4III	ACNGT	5 cut(s)	563, 1021, 1165, 1328, 1372
HpyCH4IV	ACGT	3 cut(s)	18, 115, 1032
HpyCH4V	TGCA	3 cut(s)	781, 862, 1040
HpyF10VI	GCNNNNNNNGC	3 cut(s)	419, 922, 1202
HpyF3I	CTNAG	2 cut(s)	746, 1199
HpySE526I	ACGT	3 cut(s)	18, 115, 1032
Hsp92II	CATG	7 cut(s)	141, 337, 540, 781, 829, 962, 1011
HspAI	GCGC	3 cut(s)	734, 830, 1321
Ksp22I	TGATCA	1 cut(s)	157
Kzo9I	GATC	6 cut(s)	157, 292, 342, 359, 792, 1182
LguI	GCTCTTC	4 cut(s)	675, 992, 1095, 1263
LmnI	GCTCC	2 cut(s)	458, 741
Lsp1109I	GCAGC	2 cut(s)	1307, 1325
LweI	GCATC	3 cut(s)	925, 972, 1011
MabI	ACCWGGT	1 cut(s)	226
MaeI	CTAG	4 cut(s)	527, 1158, 1206, 1251
MaeII	ACGT	3 cut(s)	18, 115, 1032
MaeIII	GTNAC	2 cut(s)	682, 714
MalI	GATC	6 cut(s)	159, 294, 344, 361, 794, 1184
MboI	GATC	6 cut(s)	157, 292, 342, 359, 792, 1182
MboII	GAAGA	9 cut(s)	634, 662, 692, 953, 979, 1050, 1112, 1280, 1293
MflI	RGATCY	2 cut(s)	292, 342
MhlI	GDGCHC	2 cut(s)	617, 1275
MluCI	AATT	8 cut(s)	10, 23, 102, 545, 608, 880, 1288, 1364
MmeI	TCCRAC	1 cut(s)	482
MnlI	CCTC	5 cut(s)	250, 955, 1076, 1141, 1249
MroXI	GAANNNNTTC	1 cut(s)	522
MseI	TTAA	3 cut(s)	108, 408, 1076
MslI	CAYNNNNRTG	1 cut(s)	1123
MspR9I	CCNGG	2 cut(s)	228, 1318
Mva1269I	GAATGC	1 cut(s)	1118
MvaI	CCWGG	2 cut(s)	228, 1318
MwoI	GCNNNNNNNGC	3 cut(s)	419, 922, 1202
NdeII	GATC	6 cut(s)	157, 292, 342, 359, 792, 1182
NheI	GCTAGC	1 cut(s)	1205
NlaIII	CATG	7 cut(s)	141, 337, 540, 781, 829, 962, 1011
NlaIV	GGNNCC	3 cut(s)	294, 460, 867
NmuCI	GTSAC	2 cut(s)	682, 714
NspI	RCATGY	4 cut(s)	141, 337, 540, 781
PaeI	GCATGC	2 cut(s)	141, 781
PaeR7I	CTCGAG	1 cut(s)	1274
PagI	TCATGA	1 cut(s)	958
PaqCI	CACCTGC	1 cut(s)	853
PciI	ACATGT	1 cut(s)	536
PciSI	GCTCTTC	4 cut(s)	675, 992, 1095, 1263
PctI	GAATGC	1 cut(s)	1118
PdmI	GAANNNNTTC	1 cut(s)	522
PkrI	GCNGC	2 cut(s)	1297, 1315
PscI	ACATGT	1 cut(s)	536
Psp124BI	GAGCTC	1 cut(s)	1275
Psp1406I	AACGTT	1 cut(s)	1032
Psp6I	CCWGG	2 cut(s)	226, 1316
PspGI	CCWGG	2 cut(s)	226, 1316
PspN4I	GGNNCC	3 cut(s)	294, 460, 867
PspXI	VCTCGAGB	1 cut(s)	1274
PsuI	RGATCY	2 cut(s)	292, 342
RsaI	GTAC	4 cut(s)	171, 203, 261, 1379
RsaNI	GTAC	4 cut(s)	170, 202, 260, 1378
RseI	CAYNNNNRTG	1 cut(s)	1123
SacI	GAGCTC	1 cut(s)	1275
SapI	GCTCTTC	4 cut(s)	675, 992, 1095, 1263
SaqAI	TTAA	3 cut(s)	108, 408, 1076
SatI	GCNGC	2 cut(s)	1296, 1314
Sau3AI	GATC	6 cut(s)	157, 292, 342, 359, 792, 1182
ScrFI	CCNGG	2 cut(s)	228, 1318
SduI	GDGCHC	2 cut(s)	617, 1275
SexAI	ACCWGGT	1 cut(s)	226
SfaNI	GCATC	3 cut(s)	925, 972, 1011
Sfr274I	CTCGAG	1 cut(s)	1274
SlaI	CTCGAG	1 cut(s)	1274
SmiMI	CAYNNNNRTG	1 cut(s)	1123
SmlI	CTYRAG	2 cut(s)	875, 1274
SmoI	CTYRAG	2 cut(s)	875, 1274
SphI	GCATGC	2 cut(s)	141, 781
Sse9I	AATT	8 cut(s)	10, 23, 102, 545, 608, 880, 1288, 1364
SsiI	CCGC	1 cut(s)	99
SspI	AATATT	1 cut(s)	1235
SspMI	CTAG	4 cut(s)	527, 1158, 1206, 1251
SstI	GAGCTC	1 cut(s)	1275
StyD4I	CCNGG	2 cut(s)	226, 1316
StyI	CCWWGG	1 cut(s)	176
TaaI	ACNGT	5 cut(s)	563, 1021, 1165, 1328, 1372
TaiI	ACGT	3 cut(s)	21, 118, 1035
TaqI	TCGA	5 cut(s)	645, 939, 1185, 1275, 1304
TasI	AATT	8 cut(s)	10, 23, 102, 545, 608, 880, 1288, 1364
Tru1I	TTAA	3 cut(s)	108, 408, 1076
Tru9I	TTAA	3 cut(s)	108, 408, 1076
TscAI	CASTG	2 cut(s)	810, 1286
TseFI	GTSAC	2 cut(s)	682, 714
TseI	GCWGC	2 cut(s)	1295, 1313
Tsp45I	GTSAC	2 cut(s)	682, 714
TspDTI	ATGAA	7 cut(s)	395, 424, 642, 681, 903, 947, 979
TspGWI	ACGGA	2 cut(s)	196, 355
TspRI	CASTG	2 cut(s)	810, 1286
XapI	RAATTY	4 cut(s)	102, 880, 1288, 1364
XceI	RCATGY	4 cut(s)	141, 337, 540, 781
XhoI	CTCGAG	1 cut(s)	1274
XmnI	GAANNNNTTC	1 cut(s)	522
XspI	CTAG	4 cut(s)	527, 1158, 1206, 1251

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.