Rorug04G0177300

CAP-Gly domain-containing linker protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000004
OG0002436
Physical Location & Seq
Reverse (-)
31091251 .. 31094442
3192 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug04G0177300.1

Sequence Viewer

Length: 2145 bp
ATGGAACTGTCGCCCATGTCCTCTTGGAGGCTAGTGGAGGACACGGGCGCCGGCGGCGGTCGAGTTGGACTCGGTGGTGGGTCGGCGGGAAGGCTATGTGGAGATAGAGAAAAGTGGCGGCGGTGGCGGGGAGGTGAGCCCAGTGGAGGAGAGGGGAAGATTAGGAGGGCGAGATCGGGGCAAGAGAGGCCCGCATTTTTGGTGGGTCGGGTCGAGGTGTTTGTTTGGTGGGAAAACCCCAAAGCAAAGGAGGCAATCCCATGTATTTGGGATGGTATTTCATGCAATGTTGCTGGAAGTGTCACCAACATAACCATTGCCAGTTTCGGTATACAAGGTACGCTACATGAATTCTCATTCTTGTCCTTCCCCAATCTCGAATATCTTGATATCAGCGTCAATAATCTCTTTGATGTCATCCCACCTCAAATTAGTTCCCTCTCAAAACTCCTTCATCTTGACCTCTCTAATAACCAGTTCTCCGGGAGAATTCCACCAGAAATTGGTCTTCAGAGAAATCTTACAATTCTCTATCTCCACAAGAATAATCTTTCTGATATTATTCCTCCTTCGTTAGGGAATCTGAAATCGCTTGTGAATCTATCAATGAGTTATAATCTACTCAATGGTTCAATTCCAGCATCACTTGGTGATCTCATAAACATTAATAGCCTCTACCTCAGCCAAAATAACCTCCATGGCAACATTCCAAAAGAGTTGGGGAACTTGAAATCTTTGGTGGATCTAAGGTTGGCCATCAATCAACTCAATGGTTCAATTCCGAAAACATTGGGTGATCTGACCAACCTTACCACTCTCTATCTCTATTCAAATAATCTCTCTGGCACCATTCCAAAAGAGTTAGGGAATCTGAAATATTTGGTGAATCTAGATTTGAGCACCAATCACCTCAGTGGTTCAATTCCGAAGACATTGGGTAATCTGACCAACCTTACCAGTCTTAATCTCTATTTTAATCATCTTTCTAGCACCATTCCAAAAGAGTTAGGGAACCTGAAATCCTTGGTGTATCTAGCATTGGACTACAATCAACTCAGTGGTTCAATTCCGACAACATTGGGTGATCTGACCAACCTTACCAGTCTTTATCTAGATTCAAATAATCTCTCTGGCACCATTCCAAAAGAGTTAAGGAACTTGAAATCTTTGGTGATTCTATGGTTAAGGATCAATCAACTCAGTGGTTCAATTCCGACAATATTGGGTGATCTGACCAACCTTACCACTCTTTATCTCCATTCAAATAACCTCTCTGGCACCATTCCAAAAGAGTTAGGGAACCTGAAATCTTTGGTGGATCTAGAATTGAGCAACAATCATCTCAGTGGTTCAATTCCGACAACATTGGGTGATCTGACCAACCTTACCACTCTCTATCTCTATTCAAATAATCTCTCTGGCACCATTCCAAAAGAGTTAGGGAATCTGAAATATTTGGTGAATCTAGATTTGAGCATCAATCAACTCAGTGGTTCAATTCCGAAGACATTCGGTAATCTGACCAACCTTACCAGTCTTAATCTCTATTTTAATAATCTTTCTGACACCATTCCAAAAGAGTTAGGGAACCTGAAATCTTTGGTGTATCTAGCCTTGGACTACAATCAACTCAGTGGTTCAATTCCGACAACATTGAGTTATCTGACCAACCTTACCAGTCTTTATCTAGATTCAAATAATCTCTCTGGCACCATTCCAAAAGAGTTAGGGAACTTGAAATCTTTGGTGATTCTATGGTTAAGCATCAATCAACTCAGTGGTTCAATTCCGACAATATTGGGTGATCTGACCAACCTTACCACTCTTTATCTCCATTCAAATAACCTCTCTGACACCATTCCAAAAGAGTTAGGGAACCTGAAATCTTTGGTGGATCTAGAATTGAGCAACAATCAACTCAGTGGTTCAATTCCGACAATATTGGGTGATCTGACCAACCTTACCACTCTTTATCTCCATTCAAATAACCTCTCTGGCACCATTCCAAAAGAGTTAGGGAACCTGAAATCTTTGGTGGATCTAGAATTGAGCTTCAATCATCTCAGTGGTTCAATTCCGACAACATTGGGTGATCTGACCAACCTTACTTGTAACGTCCCGAACCTGAATTCACCGGTTTACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

714

Amino Acids

77.53

Weight (kDa)

6.15

Isoelectric Point (pI)

17.5

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LRR_8 PF13855 115 - 160 6.5e-06 Leucine rich repeat
LRR_14 PF23598 125 - 227 2.4e-06 Leucine-rich repeat region
LRR_8 PF13855 172 - 232 1.2e-06 Leucine rich repeat
LRR_14 PF23598 215 - 328 3.1e-11 Leucine-rich repeat region
LRR_8 PF13855 294 - 352 1.1e-06 Leucine rich repeat
LRR_14 PF23598 330 - 421 1.6e-09 Leucine-rich repeat region
LRR_8 PF13855 412 - 472 1.8e-07 Leucine rich repeat
LRR_14 PF23598 426 - 520 9.9e-11 Leucine-rich repeat region
LRR_8 PF13855 486 - 544 3.1e-08 Leucine rich repeat
LRR_14 PF23598 522 - 614 1.2e-09 Leucine-rich repeat region
LRR_14 PF23598 601 - 702 2.2e-09 Leucine-rich repeat region
LRR_8 PF13855 629 - 688 1.7e-06 Leucine rich repeat
LRR_4 PF12799 629 - 668 7.8e-06 Leucine Rich repeats (2 copies)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 615
AccB1I GGYRCC 7 cut(s) 47, 845, 1133, 1277, 1421, 1709, 1997
AccB7I CCANNNNNTGG 1 cut(s) 503
AccI GTMKAC 1 cut(s) 331
AciI CCGC 7 cut(s) 54, 57, 86, 118, 121, 127, 192
AclWI GGATC 5 cut(s) 750, 1196, 1326, 1902, 2046
AcoI YGGCCR 1 cut(s) 753
AcsI RAATTY 3 cut(s) 350, 489, 2128
AcuI CTGAAG 1 cut(s) 494
AcyI GRCGYC 1 cut(s) 48
AdeI CACNNNGTG 1 cut(s) 650
AfaI GTAC 1 cut(s) 340
AfiI CCNNNNNNNGG 4 cut(s) 27, 146, 503, 575
AgeI ACCGGT 1 cut(s) 2134
AleI CACNNNNGTG 1 cut(s) 912
AloI GAACNNNNNNTCC 2 cut(s) 1004, 1036
AluBI AGCT 1 cut(s) 2052
AluI AGCT 1 cut(s) 2052
Alw21I GWGCWC 1 cut(s) 902
AlwI GGATC 5 cut(s) 750, 1196, 1326, 1902, 2046
AoxI GGCC 2 cut(s) 188, 753
ApoI RAATTY 3 cut(s) 350, 489, 2128
AseI ATTAAT 1 cut(s) 666
AsiGI ACCGGT 1 cut(s) 2134
Asp700I GAANNNNTTC 1 cut(s) 1508
AspLEI GCGC 1 cut(s) 50
AspS9I GGNCC 1 cut(s) 189
AsuC2I CCSGG 1 cut(s) 484
BalI TGGCCA 1 cut(s) 755
BanI GGYRCC 7 cut(s) 47, 845, 1133, 1277, 1421, 1709, 1997
BanII GRGCYC 1 cut(s) 141
BbsI GAAGAC 3 cut(s) 500, 935, 1511
Bbv12I GWGCWC 1 cut(s) 902
BbvCI CCTCAGC 1 cut(s) 680
BccI CCATC 2 cut(s) 266, 764
BcnI CCSGG 1 cut(s) 484
BfoI RGCGCY 1 cut(s) 51
BisI GCNGC 2 cut(s) 55, 119
BlsI GCNGC 2 cut(s) 56, 120
Bme1390I CCNGG 1 cut(s) 484
BmgT120I GGNCC 1 cut(s) 189
BmrFI CCNGG 1 cut(s) 484
BmrI ACTGGG 1 cut(s) 135
BmsI GCATC 3 cut(s) 650, 1485, 1773
BmuI ACTGGG 1 cut(s) 135
BpiI GAAGAC 3 cut(s) 500, 935, 1511
BplI GAGNNNNNCTC 2 cut(s) 54, 86
Bpu10I CCTNAGC 1 cut(s) 680
BpuMI CCSGG 1 cut(s) 484
BsaHI GRCGYC 1 cut(s) 48
BsaJI CCNNGG 3 cut(s) 697, 1023, 1614
BsaWI WCCGGW 1 cut(s) 2134
BsaXI ACNNNNNCTCC 2 cut(s) 464, 494
Bsc4I CCNNNNNNNGG 4 cut(s) 27, 146, 503, 575
Bse118I RCCGGY 2 cut(s) 50, 2134
Bse1I ACTGG 7 cut(s) 141, 321, 475, 957, 1101, 1533, 1677
Bse3DI GCAATG 2 cut(s) 292, 315
BseDI CCNNGG 3 cut(s) 697, 1023, 1614
BseGI GGATG 2 cut(s) 277, 417
BseLI CCNNNNNNNGG 4 cut(s) 27, 146, 503, 575
BseMI GCAATG 2 cut(s) 292, 315
BseNI ACTGG 7 cut(s) 141, 321, 475, 957, 1101, 1533, 1677
BseRI GAGGAG 1 cut(s) 162
Bsh1285I CGRYCG 1 cut(s) 61
BshFI GGCC 2 cut(s) 190, 755
BshNI GGYRCC 7 cut(s) 47, 845, 1133, 1277, 1421, 1709, 1997
BshTI ACCGGT 1 cut(s) 2134
BsiEI CGRYCG 1 cut(s) 61
BsiHKAI GWGCWC 1 cut(s) 902
BsiSI CCGG 3 cut(s) 51, 483, 2135
BslFI GGGAC 1 cut(s) 2102
BslI CCNNNNNNNGG 4 cut(s) 27, 146, 503, 575
BsmFI GGGAC 1 cut(s) 2102
BsnI GGCC 2 cut(s) 190, 755
Bsp1286I GDGCHC 2 cut(s) 141, 902
Bsp19I CCATGG 1 cut(s) 697
BspACI CCGC 7 cut(s) 54, 57, 86, 118, 121, 127, 192
BspANI GGCC 2 cut(s) 190, 755
BspPI GGATC 5 cut(s) 750, 1196, 1326, 1902, 2046
BspT107I GGYRCC 7 cut(s) 47, 845, 1133, 1277, 1421, 1709, 1997
BsrDI GCAATG 2 cut(s) 292, 315
BsrFI RCCGGY 2 cut(s) 50, 2134
BsrI ACTGG 7 cut(s) 141, 321, 475, 957, 1101, 1533, 1677
BssAI RCCGGY 2 cut(s) 50, 2134
BssECI CCNNGG 3 cut(s) 697, 1023, 1614
BssNAI GTATAC 1 cut(s) 332
BssNI GRCGYC 1 cut(s) 48
BssT1I CCWWGG 3 cut(s) 697, 1023, 1614
Bst1107I GTATAC 1 cut(s) 332
Bst4CI ACNGT 1 cut(s) 9
BstACI GRCGYC 1 cut(s) 48
BstC8I GCNNGC 2 cut(s) 52, 192
BstDSI CCRYGG 1 cut(s) 697
BstENI CCTNNNNNAGG 2 cut(s) 25, 573
BstF5I GGATG 2 cut(s) 277, 417
BstH2I RGCGCY 1 cut(s) 51
BstHHI GCGC 1 cut(s) 50
BstMCI CGRYCG 1 cut(s) 61
BstMWI GCNNNNNNNGC 4 cut(s) 54, 124, 187, 251
BstSCI CCNGG 1 cut(s) 482
BstV2I GAAGAC 3 cut(s) 500, 935, 1511
BstX2I RGATCY 4 cut(s) 742, 1318, 1894, 2038
BstXI CCANNNNNNTGG 1 cut(s) 267
BstYI RGATCY 4 cut(s) 742, 1318, 1894, 2038
BstZ17I GTATAC 1 cut(s) 332
BsuRI GGCC 2 cut(s) 190, 755
BtgI CCRYGG 1 cut(s) 697
BtsCI GGATG 2 cut(s) 277, 417
Cac8I GCNNGC 2 cut(s) 52, 192
CfoI GCGC 1 cut(s) 50
Cfr10I RCCGGY 2 cut(s) 50, 2134
Cfr13I GGNCC 1 cut(s) 189
CseI GACGC 1 cut(s) 385
Csp6I GTAC 1 cut(s) 339
CspAI ACCGGT 1 cut(s) 2134
CviAII CATG 5 cut(s) 16, 261, 282, 347, 698
CviJI RGCY 9 cut(s) 31, 94, 139, 190, 672, 684, 755, 1613, 2052
CviKI_1 RGCY 9 cut(s) 31, 94, 139, 190, 672, 684, 755, 1613, 2052
CviQI GTAC 1 cut(s) 339
DinI GGCGCC 1 cut(s) 49
DraIII CACNNNGTG 1 cut(s) 650
EaeI YGGCCR 1 cut(s) 753
Eco130I CCWWGG 3 cut(s) 697, 1023, 1614
Eco24I GRGCYC 1 cut(s) 141
Eco32I GATATC 1 cut(s) 391
Eco57I CTGAAG 1 cut(s) 494
EcoNI CCTNNNNNAGG 2 cut(s) 25, 573
EcoRI GAATTC 3 cut(s) 350, 489, 2128
EcoRV GATATC 1 cut(s) 391
EcoT14I CCWWGG 3 cut(s) 697, 1023, 1614
EcoT38I GRGCYC 1 cut(s) 141
EgeI GGCGCC 1 cut(s) 49
EheI GGCGCC 1 cut(s) 49
ErhI CCWWGG 3 cut(s) 697, 1023, 1614
FaeI CATG 5 cut(s) 19, 264, 285, 350, 701
FaqI GGGAC 1 cut(s) 2102
FatI CATG 5 cut(s) 15, 260, 281, 346, 697
FauI CCCGC 3 cut(s) 79, 120, 199
FblI GTMKAC 1 cut(s) 331
Fnu4HI GCNGC 2 cut(s) 55, 119
FokI GGATG 2 cut(s) 284, 404
FriOI GRGCYC 1 cut(s) 141
Fsp4HI GCNGC 2 cut(s) 55, 119
GlaI GCGC 1 cut(s) 49
GluI GCNGC 2 cut(s) 55, 119
HaeII RGCGCY 1 cut(s) 51
HaeIII GGCC 2 cut(s) 190, 755
HapII CCGG 3 cut(s) 51, 483, 2135
HgaI GACGC 1 cut(s) 385
HhaI GCGC 1 cut(s) 50
Hin1I GRCGYC 1 cut(s) 48
Hin1II CATG 5 cut(s) 19, 264, 285, 350, 701
Hin6I GCGC 1 cut(s) 48
HinP1I GCGC 1 cut(s) 48
HpaII CCGG 3 cut(s) 51, 483, 2135
Hpy166II GTNNAC 2 cut(s) 332, 2140
Hpy8I GTNNAC 2 cut(s) 332, 2140
HpyAV CCTTC 4 cut(s) 84, 376, 461, 579
HpyCH4III ACNGT 1 cut(s) 9
HpyCH4IV ACGT 1 cut(s) 2115
HpyCH4V TGCA 1 cut(s) 285
HpyF10VI GCNNNNNNNGC 4 cut(s) 54, 124, 187, 251
HpySE526I ACGT 1 cut(s) 2115
Hsp92I GRCGYC 1 cut(s) 48
Hsp92II CATG 5 cut(s) 19, 264, 285, 350, 701
HspAI GCGC 1 cut(s) 48
KasI GGCGCC 1 cut(s) 47
KroI GCCGGC 1 cut(s) 50
KroNI GCCGGC 1 cut(s) 52
LweI GCATC 3 cut(s) 650, 1485, 1773
MaeII ACGT 1 cut(s) 2115
MaeIII GTNAC 2 cut(s) 301, 2111
MboII GAAGA 4 cut(s) 169, 500, 940, 1516
MflI RGATCY 4 cut(s) 742, 1318, 1894, 2038
MhlI GDGCHC 2 cut(s) 141, 902
MlsI TGGCCA 1 cut(s) 755
MluNI TGGCCA 1 cut(s) 755
Mly113I GGCGCC 1 cut(s) 48
MlyI GAGTC 1 cut(s) 63
MmeI TCCRAC 8 cut(s) 46, 1094, 1238, 1382, 1670, 1814, 1958, 2102
Mox20I TGGCCA 1 cut(s) 755
MreI CGCCGGCG 1 cut(s) 50
MroNI GCCGGC 1 cut(s) 50
MroXI GAANNNNTTC 1 cut(s) 1508
MscI TGGCCA 1 cut(s) 755
MseI TTAA 8 cut(s) 666, 963, 975, 1151, 1184, 1539, 1551, 1760
MslI CAYNNNNRTG 3 cut(s) 912, 1344, 2064
Msp20I TGGCCA 1 cut(s) 755
MspI CCGG 3 cut(s) 51, 483, 2135
MspR9I CCNGG 1 cut(s) 484
MwoI GCNNNNNNNGC 4 cut(s) 54, 124, 187, 251
NaeI GCCGGC 1 cut(s) 52
NarI GGCGCC 1 cut(s) 48
NciI CCSGG 1 cut(s) 484
NcoI CCATGG 1 cut(s) 697
NgoMIV GCCGGC 1 cut(s) 50
NlaIII CATG 5 cut(s) 19, 264, 285, 350, 701
NmuCI GTSAC 1 cut(s) 301
OliI CACNNNNGTG 1 cut(s) 912
PdiI GCCGGC 1 cut(s) 52
PdmI GAANNNNTTC 1 cut(s) 1508
PflMI CCANNNNNTGG 1 cut(s) 503
PfoI TCCNGGA 1 cut(s) 482
PinAI ACCGGT 1 cut(s) 2134
PkrI GCNGC 2 cut(s) 56, 120
PleI GAGTC 1 cut(s) 63
PluTI GGCGCC 1 cut(s) 51
PpsI GAGTC 1 cut(s) 63
PshBI ATTAAT 1 cut(s) 666
PsiI TTATAA 1 cut(s) 615
PspPI GGNCC 1 cut(s) 189
PsuI RGATCY 4 cut(s) 742, 1318, 1894, 2038
RsaI GTAC 1 cut(s) 340
RsaNI GTAC 1 cut(s) 339
RseI CAYNNNNRTG 3 cut(s) 912, 1344, 2064
SaqAI TTAA 8 cut(s) 666, 963, 975, 1151, 1184, 1539, 1551, 1760
SatI GCNGC 2 cut(s) 55, 119
Sau96I GGNCC 1 cut(s) 189
SchI GAGTC 1 cut(s) 63
ScrFI CCNGG 1 cut(s) 484
SduI GDGCHC 2 cut(s) 141, 902
SfaNI GCATC 3 cut(s) 650, 1485, 1773
SfoI GGCGCC 1 cut(s) 49
SgrAI CRCCGGYG 1 cut(s) 50
SmiMI CAYNNNNRTG 3 cut(s) 912, 1344, 2064
SsiI CCGC 7 cut(s) 54, 57, 86, 118, 121, 127, 192
SspDI GGCGCC 1 cut(s) 47
SspI AATATT 5 cut(s) 878, 1221, 1454, 1797, 1941
StyD4I CCNGG 1 cut(s) 482
StyI CCWWGG 3 cut(s) 697, 1023, 1614
TaaI ACNGT 1 cut(s) 9
TaiI ACGT 1 cut(s) 2118
TaqI TCGA 3 cut(s) 61, 213, 378
TauI GCSGC 2 cut(s) 57, 121
Tru1I TTAA 8 cut(s) 666, 963, 975, 1151, 1184, 1539, 1551, 1760
Tru9I TTAA 8 cut(s) 666, 963, 975, 1151, 1184, 1539, 1551, 1760
TseFI GTSAC 1 cut(s) 301
Tsp45I GTSAC 1 cut(s) 301
TspDTI ATGAA 3 cut(s) 270, 363, 443
Van91I CCANNNNNTGG 1 cut(s) 503
VspI ATTAAT 1 cut(s) 666
XagI CCTNNNNNAGG 2 cut(s) 25, 573
XapI RAATTY 3 cut(s) 350, 489, 2128
XbaI TCTAGA 7 cut(s) 889, 1111, 1321, 1465, 1687, 1897, 2041
XmiI GTMKAC 1 cut(s) 331
XmnI GAANNNNTTC 1 cut(s) 1508
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.