Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

OG0002436

Physical Location & Seq

Genomic Coordinates Reverse (-)

10767308 .. 10768989

Gene Structure 1682 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G137600.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 882 bp

ATGGCTTCCCTAGTTTCAGCTCAACAAGTCTCAGAATCACTCAAATATCAGACATGGATCTTGAGAGTTTCTATCCACTGTGAAGGTTGCAAGAGGAAAGTCAAGAAAGTTCTACAAAAAATTGATGGTGTTTACACCACAGCTATTGACTCACAGCAAAACAGAGTTACAGTCACTGGAAACGTCGACGTTCAGACCCTCATCAAGAAGCTGATCATGAAAGCAGGTAAGAAAGCAGAGTTATGGCCAGCAAATCTCACTGGGAAAGACCAATACTCCCTGAAAGCCAAGAACAAGGACAAACAGAAAGGCCCAAATCACAGTGATGAGCAGAACCCATGTGAGAAAGTTGGAGCACTCAAGCTTAGCTCTGCTAAAAACAGAGCAAGTACTGCTACTCAGGCCGACCCACCTAAGGTTTCCGGCGATATGTCGCCGGAACTGACTACCGGCGGCAAGGAATCTCCGGCCATGAACCTTCAGAGCAATGAAAGTGAGAAAAGAAGTGTCAGCAAAAGGAAGAAAAACGAGGAGCCAAAAGATTATGAGGACAGAAGGTGTAATTTGGGTCCTACAGGAGGCTCTGGTGCACCTGCAAGCAGAGGATCTCAGCCTCTGGATCATCCAGGTGATCGCAGCCATACACGTCAGATGGCATTCCTGTATCCGATGGATTACAACTCTCCTCTGGTGTATGTTGCGGGTGGCAGTGCAGCTGCTAGCATGGGCTTGGCTCCTAATTTTTATCATGTTCCATCACCACCGTACACGTGGGCAACAACTAGTCATCAAGAGATTGATGGGGTGATGAAGAAGGCAACATGTCTGGACATTTTGCAGATTTTCAGTGATGAAAATGCCAATGGGTGTTTTATCATGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HMA

Protein Analysis

294

Amino Acids

31.99

Weight (kDa)

9.21

Isoelectric Point (pI)

45.34

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002436)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G15790 AT4G15790
fragaria_vesca	FvH4_4g17930 FvH4_4g17930 FvH4_4g17940 FvH4_4g17940 FvH4_4g17940
malus_domestica	MD13G1169200.v1.1 MD13G1169300.v1.1 MD16G1170500.v1.1
prunus_persica	Prupe.1G137600_v2.0.a1 Prupe.1G137600_v2.0.a1 Prupe.1G137600_v2.0.a1 Prupe.1G137900_v2.0.a1
pyrus_communis	pycom13g14490 pycom16g14290
rosa_chinensis	RchiOBHm_Chr4g0422101 RchiOBHm_Chr4g0422111
rosa_laevigata	RLG00000007635
rosa_multiflora	Rmu_sc0009286.1_g000003 Rmu_sc0009286.1_g000004
rosa_roxburghii	Rroxscaffold_3G00224970 Rroxscaffold_4G00330840 Rroxscaffold_5G00364180 Rroxscaffold_5G00364190 Rroxscaffold_6G00405940
rosa_rugosa	Rorug04G0177200 Rorug04G0177300 Rorug04G0177400 Rorug04G0177500
rosa_samantha	Rh4AG236800 Rh4AG236900 Rh4BG239600 Rh4BG239700 Rh4CG251500 Rh4CG251600 Rh4DG235700 Rh4DG235800 Rh6BG107100
rosa_wichuraiana	Rw4G020480 Rw4G020490

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	601
Acc36I	ACCTGC	2 cut(s)	215, 601
AccI	GTMKAC	1 cut(s)	186
AciI	CCGC	2 cut(s)	453, 701
AclWI	GGATC	3 cut(s)	65, 613, 627
AcoI	YGGCCR	2 cut(s)	245, 468
AcuI	CTGAAG	1 cut(s)	464
AcvI	CACGTG	1 cut(s)	771
AfaI	GTAC	2 cut(s)	391, 767
AfiI	CCNNNNNNNGG	2 cut(s)	415, 578
AflIII	ACRYGT	3 cut(s)	644, 768, 821
AhlI	ACTAGT	1 cut(s)	782
AjiI	CACGTC	1 cut(s)	647
AjnI	CCWGG	1 cut(s)	625
AluBI	AGCT	6 cut(s)	20, 143, 211, 364, 369, 716
AluI	AGCT	6 cut(s)	20, 143, 211, 364, 369, 716
Alw21I	GWGCWC	2 cut(s)	358, 592
Alw26I	GTCTC	1 cut(s)	34
Alw44I	GTGCAC	1 cut(s)	588
AlwI	GGATC	3 cut(s)	65, 613, 627
AlwNI	CAGNNNCTG	2 cut(s)	176, 616
AoxI	GGCC	4 cut(s)	245, 310, 402, 468
ApaLI	GTGCAC	1 cut(s)	588
ApeKI	GCWGC	3 cut(s)	636, 713, 716
AspS9I	GGNCC	2 cut(s)	311, 569
AsuHPI	GGTGA	3 cut(s)	641, 750, 817
AsuNHI	GCTAGC	1 cut(s)	719
AvaII	GGWCC	1 cut(s)	569
AxyI	CCTNAGG	1 cut(s)	414
BaeGI	GKGCMC	1 cut(s)	592
BalI	TGGCCA	1 cut(s)	247
BbrPI	CACGTG	1 cut(s)	771
Bbv12I	GWGCWC	2 cut(s)	358, 592
BbvI	GCAGC	3 cut(s)	648, 703, 725
BccI	CCATC	5 cut(s)	119, 646, 664, 763, 794
BciT130I	CCWGG	1 cut(s)	627
BciVI	GTATCC	1 cut(s)	675
BclI	TGATCA	1 cut(s)	213
BcoDI	GTCTC	1 cut(s)	34
BcuI	ACTAGT	1 cut(s)	782
BfaI	CTAG	3 cut(s)	11, 720, 783
BfmI	CTRYAG	1 cut(s)	573
BfuAI	ACCTGC	2 cut(s)	215, 601
BfuI	GTATCC	1 cut(s)	675
BisI	GCNGC	4 cut(s)	454, 637, 714, 717
BlpI	GCTNAGC	1 cut(s)	365
BlsI	GCNGC	4 cut(s)	455, 638, 715, 718
BmcAI	AGTACT	1 cut(s)	391
Bme1390I	CCNGG	1 cut(s)	627
Bme18I	GGWCC	1 cut(s)	569
BmgBI	CACGTC	1 cut(s)	647
BmgT120I	GGNCC	2 cut(s)	311, 569
BmiI	GGNNCC	3 cut(s)	534, 570, 735
BmrFI	CCNGG	1 cut(s)	627
BmrI	ACTGGG	1 cut(s)	270
BmtI	GCTAGC	1 cut(s)	723
BmuI	ACTGGG	1 cut(s)	270
Bpu1102I	GCTNAGC	1 cut(s)	365
BpuEI	CTTGAG	2 cut(s)	82, 344
BsaAI	YACGTR	1 cut(s)	771
BsaXI	ACNNNNNCTCC	2 cut(s)	260, 290
Bsc4I	CCNNNNNNNGG	2 cut(s)	415, 578
Bse118I	RCCGGY	1 cut(s)	449
Bse1I	ACTGG	2 cut(s)	181, 265
Bse21I	CCTNAGG	1 cut(s)	414
Bse3DI	GCAATG	1 cut(s)	493
BseBI	CCWGG	1 cut(s)	627
BseGI	GGATG	1 cut(s)	622
BseLI	CCNNNNNNNGG	2 cut(s)	415, 578
BseMI	GCAATG	1 cut(s)	493
BseMII	CTCAG	3 cut(s)	45, 413, 623
BseNI	ACTGG	2 cut(s)	181, 265
BseRI	GAGGAG	2 cut(s)	545, 675
BseSI	GKGCMC	1 cut(s)	592
BseXI	GCAGC	3 cut(s)	648, 703, 725
BsgI	GTGCAG	1 cut(s)	732
BshFI	GGCC	4 cut(s)	247, 312, 404, 470
BsiHKAI	GWGCWC	2 cut(s)	358, 592
BsiSI	CCGG	4 cut(s)	423, 437, 450, 467
BslI	CCNNNNNNNGG	2 cut(s)	415, 578
BsmAI	GTCTC	1 cut(s)	34
BsmI	GAATGC	1 cut(s)	656
BsnI	GGCC	4 cut(s)	247, 312, 404, 470
Bsp1286I	GDGCHC	2 cut(s)	358, 592
Bsp143I	GATC	5 cut(s)	57, 213, 605, 619, 631
Bsp1720I	GCTNAGC	1 cut(s)	365
BspACI	CCGC	2 cut(s)	453, 701
BspANI	GGCC	4 cut(s)	247, 312, 404, 470
BspCNI	CTCAG	3 cut(s)	44, 412, 622
BspHI	TCATGA	1 cut(s)	216
BspLI	GGNNCC	3 cut(s)	534, 570, 735
BspMI	ACCTGC	2 cut(s)	215, 601
BspOI	GCTAGC	1 cut(s)	723
BspPI	GGATC	3 cut(s)	65, 613, 627
BsrDI	GCAATG	1 cut(s)	493
BsrFI	RCCGGY	1 cut(s)	449
BsrI	ACTGG	2 cut(s)	181, 265
BssAI	RCCGGY	1 cut(s)	449
BssMI	GATC	5 cut(s)	57, 213, 605, 619, 631
Bst2UI	CCWGG	1 cut(s)	627
Bst4CI	ACNGT	4 cut(s)	80, 172, 323, 765
BstAPI	GCANNNNNTGC	1 cut(s)	392
BstBAI	YACGTR	1 cut(s)	771
BstC8I	GCNNGC	3 cut(s)	249, 598, 721
BstDEI	CTNAG	5 cut(s)	31, 365, 399, 414, 609
BstENI	CCTNNNNNAGG	1 cut(s)	576
BstF5I	GGATG	1 cut(s)	622
BstKTI	GATC	5 cut(s)	60, 216, 608, 622, 634
BstMAI	GTCTC	1 cut(s)	34
BstMBI	GATC	5 cut(s)	57, 213, 605, 619, 631
BstMWI	GCNNNNNNNGC	2 cut(s)	392, 401
BstNI	CCWGG	1 cut(s)	627
BstNSI	RCATGY	1 cut(s)	825
BstSCI	CCNGG	1 cut(s)	625
BstSFI	CTRYAG	1 cut(s)	573
BstSLI	GKGCMC	1 cut(s)	592
BstV1I	GCAGC	3 cut(s)	648, 703, 725
BstX2I	RGATCY	2 cut(s)	57, 605
BstYI	RGATCY	2 cut(s)	57, 605
Bsu36I	CCTNAGG	1 cut(s)	414
BsuI	GTATCC	1 cut(s)	675
BsuRI	GGCC	4 cut(s)	247, 312, 404, 470
BtrI	CACGTC	1 cut(s)	647
BtsCI	GGATG	1 cut(s)	622
BtsI	GCAGTG	1 cut(s)	715
BtsIMutI	CAGTG	6 cut(s)	76, 174, 258, 328, 715, 853
BveI	ACCTGC	2 cut(s)	215, 601
Cac8I	GCNNGC	3 cut(s)	249, 598, 721
CaiI	CAGNNNCTG	2 cut(s)	176, 616
CciI	TCATGA	1 cut(s)	216
Cfr10I	RCCGGY	1 cut(s)	449
Cfr13I	GGNCC	2 cut(s)	311, 569
Csp6I	GTAC	2 cut(s)	390, 766
CspCI	CAANNNNNGTGG	2 cut(s)	127, 162
CviAII	CATG	8 cut(s)	54, 217, 339, 472, 724, 749, 822, 877
CviQI	GTAC	2 cut(s)	390, 766
DdeI	CTNAG	5 cut(s)	31, 365, 399, 414, 609
DpnI	GATC	5 cut(s)	59, 215, 607, 621, 633
DpnII	GATC	5 cut(s)	57, 213, 605, 619, 631
EaeI	YGGCCR	2 cut(s)	245, 468
Eco47I	GGWCC	1 cut(s)	569
Eco57I	CTGAAG	1 cut(s)	464
Eco72I	CACGTG	1 cut(s)	771
Eco81I	CCTNAGG	1 cut(s)	414
EcoNI	CCTNNNNNAGG	1 cut(s)	576
EcoO109I	RGGNCCY	1 cut(s)	569
EcoRII	CCWGG	1 cut(s)	625
FaeI	CATG	8 cut(s)	57, 220, 342, 475, 727, 752, 825, 880
FatI	CATG	8 cut(s)	53, 216, 338, 471, 723, 748, 821, 876
FauI	CCCGC	1 cut(s)	694
FbaI	TGATCA	1 cut(s)	213
FblI	GTMKAC	1 cut(s)	186
Fnu4HI	GCNGC	4 cut(s)	454, 637, 714, 717
FokI	GGATG	1 cut(s)	609
Fsp4HI	GCNGC	4 cut(s)	454, 637, 714, 717
FspBI	CTAG	3 cut(s)	11, 720, 783
GluI	GCNGC	4 cut(s)	454, 637, 714, 717
HaeIII	GGCC	4 cut(s)	247, 312, 404, 470
HapII	CCGG	4 cut(s)	423, 437, 450, 467
Hin1II	CATG	8 cut(s)	57, 220, 342, 475, 727, 752, 825, 880
HincII	GTYRAC	1 cut(s)	187
HindII	GTYRAC	1 cut(s)	187
HindIII	AAGCTT	1 cut(s)	362
HinfI	GANTC	3 cut(s)	35, 149, 461
HpaII	CCGG	4 cut(s)	423, 437, 450, 467
HphI	GGTGA	3 cut(s)	641, 750, 817
Hpy166II	GTNNAC	4 cut(s)	133, 187, 590, 768
Hpy188I	TCNGA	6 cut(s)	34, 51, 195, 483, 651, 669
Hpy188III	TCNNGA	7 cut(s)	61, 103, 205, 217, 617, 791, 827
Hpy8I	GTNNAC	4 cut(s)	133, 187, 590, 768
Hpy99I	CGWCG	2 cut(s)	188, 191
HpyAV	CCTTC	4 cut(s)	77, 488, 549, 808
HpyCH4III	ACNGT	4 cut(s)	80, 172, 323, 765
HpyCH4IV	ACGT	4 cut(s)	183, 189, 646, 770
HpyCH4V	TGCA	5 cut(s)	90, 590, 596, 713, 838
HpyF10VI	GCNNNNNNNGC	2 cut(s)	392, 401
HpyF3I	CTNAG	5 cut(s)	31, 365, 399, 414, 609
HpySE526I	ACGT	4 cut(s)	183, 189, 646, 770
Hsp92II	CATG	8 cut(s)	57, 220, 342, 475, 727, 752, 825, 880
Ksp22I	TGATCA	1 cut(s)	213
Kzo9I	GATC	5 cut(s)	57, 213, 605, 619, 631
LmnI	GCTCC	3 cut(s)	353, 532, 739
Lsp1109I	GCAGC	3 cut(s)	648, 703, 725
MaeI	CTAG	3 cut(s)	11, 720, 783
MaeII	ACGT	4 cut(s)	183, 189, 646, 770
MaeIII	GTNAC	2 cut(s)	166, 172
MalI	GATC	5 cut(s)	59, 215, 607, 621, 633
MboI	GATC	5 cut(s)	57, 213, 605, 619, 631
MboII	GAAGA	2 cut(s)	532, 823
MflI	RGATCY	2 cut(s)	57, 605
MhlI	GDGCHC	2 cut(s)	358, 592
MlsI	TGGCCA	1 cut(s)	247
MluCI	AATT	3 cut(s)	120, 562, 739
MluNI	TGGCCA	1 cut(s)	247
MlyI	GAGTC	1 cut(s)	143
MmeI	TCCRAC	1 cut(s)	331
MnlI	CCTC	8 cut(s)	87, 209, 523, 541, 572, 596, 624, 696
Mox20I	TGGCCA	1 cut(s)	247
MscI	TGGCCA	1 cut(s)	247
MslI	CAYNNNNRTG	2 cut(s)	324, 627
Msp20I	TGGCCA	1 cut(s)	247
MspA1I	CMGCKG	1 cut(s)	716
MspI	CCGG	4 cut(s)	423, 437, 450, 467
MspR9I	CCNGG	1 cut(s)	627
Mva1269I	GAATGC	1 cut(s)	656
MvaI	CCWGG	1 cut(s)	627
MwoI	GCNNNNNNNGC	2 cut(s)	392, 401
NdeII	GATC	5 cut(s)	57, 213, 605, 619, 631
NheI	GCTAGC	1 cut(s)	719
NlaIII	CATG	8 cut(s)	57, 220, 342, 475, 727, 752, 825, 880
NlaIV	GGNNCC	3 cut(s)	534, 570, 735
NmuCI	GTSAC	1 cut(s)	172
NspI	RCATGY	1 cut(s)	825
PagI	TCATGA	1 cut(s)	216
PaqCI	CACCTGC	1 cut(s)	601
PciI	ACATGT	1 cut(s)	821
PctI	GAATGC	1 cut(s)	656
PfeI	GAWTC	2 cut(s)	35, 461
PkrI	GCNGC	4 cut(s)	455, 638, 715, 718
PleI	GAGTC	1 cut(s)	143
PmaCI	CACGTG	1 cut(s)	771
PmlI	CACGTG	1 cut(s)	771
PpsI	GAGTC	1 cut(s)	143
Ppu21I	YACGTR	1 cut(s)	771
PpuMI	RGGWCCY	1 cut(s)	569
PscI	ACATGT	1 cut(s)	821
Psp5II	RGGWCCY	1 cut(s)	569
Psp6I	CCWGG	1 cut(s)	625
PspCI	CACGTG	1 cut(s)	771
PspGI	CCWGG	1 cut(s)	625
PspN4I	GGNNCC	3 cut(s)	534, 570, 735
PspPI	GGNCC	2 cut(s)	311, 569
PspPPI	RGGWCCY	1 cut(s)	569
PstNI	CAGNNNCTG	2 cut(s)	176, 616
PsuI	RGATCY	2 cut(s)	57, 605
PvuII	CAGCTG	1 cut(s)	716
RsaI	GTAC	2 cut(s)	391, 767
RsaNI	GTAC	2 cut(s)	390, 766
RseI	CAYNNNNRTG	2 cut(s)	324, 627
SalI	GTCGAC	1 cut(s)	185
SatI	GCNGC	4 cut(s)	454, 637, 714, 717
Sau3AI	GATC	5 cut(s)	57, 213, 605, 619, 631
Sau96I	GGNCC	2 cut(s)	311, 569
ScaI	AGTACT	1 cut(s)	391
SchI	GAGTC	1 cut(s)	143
ScrFI	CCNGG	1 cut(s)	627
SduI	GDGCHC	2 cut(s)	358, 592
SfcI	CTRYAG	1 cut(s)	573
SgrDI	CGTCGACG	1 cut(s)	185
SinI	GGWCC	1 cut(s)	569
SmiMI	CAYNNNNRTG	2 cut(s)	324, 627
SmlI	CTYRAG	2 cut(s)	61, 359
SmoI	CTYRAG	2 cut(s)	61, 359
SpeI	ACTAGT	1 cut(s)	782
Sse9I	AATT	3 cut(s)	120, 562, 739
SsiI	CCGC	2 cut(s)	453, 701
SspMI	CTAG	3 cut(s)	11, 720, 783
StyD4I	CCNGG	1 cut(s)	625
TaaI	ACNGT	4 cut(s)	80, 172, 323, 765
TaiI	ACGT	4 cut(s)	186, 192, 649, 773
TaqI	TCGA	1 cut(s)	186
TasI	AATT	3 cut(s)	120, 562, 739
TatI	WGTACW	1 cut(s)	389
TauI	GCSGC	1 cut(s)	456
TfiI	GAWTC	2 cut(s)	35, 461
TscAI	CASTG	6 cut(s)	83, 181, 265, 328, 715, 853
TseFI	GTSAC	1 cut(s)	172
TseI	GCWGC	3 cut(s)	636, 713, 716
Tsp45I	GTSAC	1 cut(s)	172
TspDTI	ATGAA	5 cut(s)	233, 488, 504, 824, 867
TspRI	CASTG	6 cut(s)	83, 181, 265, 328, 715, 853
VneI	GTGCAC	1 cut(s)	588
VpaK11BI	GGWCC	1 cut(s)	569
XagI	CCTNNNNNAGG	1 cut(s)	576
XceI	RCATGY	1 cut(s)	825
XcmI	CCANNNNNNNNNTGG	1 cut(s)	768
XmiI	GTMKAC	1 cut(s)	186
XspI	CTAG	3 cut(s)	11, 720, 783
ZrmI	AGTACT	1 cut(s)	391

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.