Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000005

Orthogroup ID

OG0002436

Physical Location & Seq

Genomic Coordinates Forward (+)

45462890 .. 45465362

Gene Structure 2473 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_5G00364180.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 429 bp

ATGGCCAACTCCGATTCCACCGCTTCTCTTCCTCCATCGGCTCCTCTCTCCGTCGCTCCTCCTCCGCTCTCATCCACAACAAAGGAGAATCTGACTCCAGTTGCCTGCAAGATTGAGGAACTGACTGAATCCAGGTCTGAGCTGTTTGGCAGAATTCAAGGGTTGAAGAAGGATTTACAAACATGGAGGTCAAAGCTAGACTCGCAAGTTAAGGTCTACCGCGATGAACTTTCAGAACTCAAGCAATCGCTCAACACTGAAGTGGAGCAACTTCGATCAGAATTTCAAGAACTGAGGACCACTCTTCAGCAGCAGCAAGATGATGTAACTACTAGTCTTCGGAATTTTGGGTTTCTGCAGTTACAGGACGTGACTGGAGATTCCAAGGCTGATAATACTGAGGTTGAAGGGAAGGCTCTCAAAGAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

142

Amino Acids

15.86

Weight (kDa)

4.81

Isoelectric Point (pI)

73.08

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002436)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G15790 AT4G15790
fragaria_vesca	FvH4_4g17930 FvH4_4g17930 FvH4_4g17940 FvH4_4g17940 FvH4_4g17940
malus_domestica	MD13G1169200.v1.1 MD13G1169300.v1.1 MD16G1170500.v1.1
prunus_persica	Prupe.1G137600_v2.0.a1 Prupe.1G137600_v2.0.a1 Prupe.1G137600_v2.0.a1 Prupe.1G137900_v2.0.a1
pyrus_communis	pycom13g14490 pycom16g14290
rosa_chinensis	RchiOBHm_Chr4g0422101 RchiOBHm_Chr4g0422111
rosa_laevigata	RLG00000007635
rosa_multiflora	Rmu_sc0009286.1_g000003 Rmu_sc0009286.1_g000004
rosa_roxburghii	Rroxscaffold_3G00224970 Rroxscaffold_4G00330840 Rroxscaffold_5G00364180 Rroxscaffold_5G00364190 Rroxscaffold_6G00405940
rosa_rugosa	Rorug04G0177200 Rorug04G0177300 Rorug04G0177400 Rorug04G0177500
rosa_samantha	Rh4AG236800 Rh4AG236900 Rh4BG239600 Rh4BG239700 Rh4CG251500 Rh4CG251600 Rh4DG235700 Rh4DG235800 Rh6BG107100
rosa_wichuraiana	Rw4G020480 Rw4G020490

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	67
AccI	GTMKAC	1 cut(s)	216
AccII	CGCG	1 cut(s)	222
AciI	CCGC	3 cut(s)	21, 65, 220
AcoI	YGGCCR	1 cut(s)	3
AcsI	RAATTY	3 cut(s)	153, 281, 343
AcuI	CTGAAG	2 cut(s)	279, 290
AgsI	TTSAA	4 cut(s)	158, 166, 287, 407
AhlI	ACTAGT	1 cut(s)	332
AjiI	CACGTC	1 cut(s)	370
AjnI	CCWGG	1 cut(s)	131
AleI	CACNNNNGTG	1 cut(s)	260
AluBI	AGCT	2 cut(s)	142, 196
AluI	AGCT	2 cut(s)	142, 196
AoxI	GGCC	1 cut(s)	3
ApeKI	GCWGC	2 cut(s)	310, 313
ApoI	RAATTY	3 cut(s)	153, 281, 343
AspS9I	GGNCC	1 cut(s)	297
AvaII	GGWCC	1 cut(s)	297
BalI	TGGCCA	1 cut(s)	5
BbsI	GAAGAC	1 cut(s)	329
BbvI	GCAGC	2 cut(s)	322, 325
BccI	CCATC	1 cut(s)	43
BciT130I	CCWGG	1 cut(s)	133
BcuI	ACTAGT	1 cut(s)	332
BfaI	CTAG	2 cut(s)	197, 333
BfmI	CTRYAG	1 cut(s)	356
BisI	GCNGC	2 cut(s)	311, 314
BlsI	GCNGC	2 cut(s)	312, 315
Bme1390I	CCNGG	1 cut(s)	133
Bme18I	GGWCC	1 cut(s)	297
BmgBI	CACGTC	1 cut(s)	370
BmgT120I	GGNCC	1 cut(s)	297
BmiI	GGNNCC	1 cut(s)	42
BmrFI	CCNGG	1 cut(s)	133
BpiI	GAAGAC	1 cut(s)	329
BplI	GAGNNNNNCTC	2 cut(s)	286, 318
BpmI	CTGGAG	2 cut(s)	81, 396
BpuEI	CTTGAG	1 cut(s)	224
BsaJI	CCNNGG	1 cut(s)	384
Bse1I	ACTGG	2 cut(s)	98, 379
BseBI	CCWGG	1 cut(s)	133
BseDI	CCNNGG	1 cut(s)	384
BseGI	GGATG	1 cut(s)	71
BseMII	CTCAG	3 cut(s)	129, 284, 390
BseNI	ACTGG	2 cut(s)	98, 379
BseRI	GAGGAG	3 cut(s)	33, 48, 51
BseXI	GCAGC	2 cut(s)	322, 325
Bsh1236I	CGCG	1 cut(s)	222
BshFI	GGCC	1 cut(s)	5
BsnI	GGCC	1 cut(s)	5
Bsp143I	GATC	1 cut(s)	275
BspACI	CCGC	3 cut(s)	21, 65, 220
BspANI	GGCC	1 cut(s)	5
BspCNI	CTCAG	3 cut(s)	130, 285, 391
BspFNI	CGCG	1 cut(s)	222
BspLI	GGNNCC	1 cut(s)	42
BspMAI	CTGCAG	1 cut(s)	360
BsrBI	CCGCTC	1 cut(s)	67
BsrI	ACTGG	2 cut(s)	98, 379
BssECI	CCNNGG	1 cut(s)	384
BssMI	GATC	1 cut(s)	275
BssT1I	CCWWGG	1 cut(s)	384
Bst2UI	CCWGG	1 cut(s)	133
Bst6I	CTCTTC	2 cut(s)	33, 309
BstC8I	GCNNGC	1 cut(s)	106
BstDEI	CTNAG	3 cut(s)	138, 293, 399
BstF5I	GGATG	1 cut(s)	71
BstFNI	CGCG	1 cut(s)	222
BstKTI	GATC	1 cut(s)	278
BstMBI	GATC	1 cut(s)	275
BstMWI	GCNNNNNNNGC	1 cut(s)	202
BstNI	CCWGG	1 cut(s)	133
BstSCI	CCNGG	1 cut(s)	131
BstSFI	CTRYAG	1 cut(s)	356
BstUI	CGCG	1 cut(s)	222
BstV1I	GCAGC	2 cut(s)	322, 325
BstV2I	GAAGAC	1 cut(s)	329
BsuRI	GGCC	1 cut(s)	5
BtgZI	GCGATG	1 cut(s)	237
BtrI	CACGTC	1 cut(s)	370
BtsCI	GGATG	1 cut(s)	71
BtsIMutI	CAGTG	1 cut(s)	255
Cac8I	GCNNGC	1 cut(s)	106
Cfr13I	GGNCC	1 cut(s)	297
CviAII	CATG	1 cut(s)	183
CviJI	RGCY	6 cut(s)	5, 41, 142, 196, 389, 416
CviKI_1	RGCY	6 cut(s)	5, 41, 142, 196, 389, 416
DdeI	CTNAG	3 cut(s)	138, 293, 399
DpnI	GATC	1 cut(s)	277
DpnII	GATC	1 cut(s)	275
EaeI	YGGCCR	1 cut(s)	3
Eam1104I	CTCTTC	2 cut(s)	33, 309
EarI	CTCTTC	2 cut(s)	33, 309
Eco130I	CCWWGG	1 cut(s)	384
Eco47I	GGWCC	1 cut(s)	297
Eco57I	CTGAAG	2 cut(s)	279, 290
EcoRI	GAATTC	1 cut(s)	153
EcoRII	CCWGG	1 cut(s)	131
EcoT14I	CCWWGG	1 cut(s)	384
ErhI	CCWWGG	1 cut(s)	384
FaeI	CATG	1 cut(s)	186
FaiI	YATR	1 cut(s)	184
FatI	CATG	1 cut(s)	182
FblI	GTMKAC	1 cut(s)	216
Fnu4HI	GCNGC	2 cut(s)	311, 314
FokI	GGATG	1 cut(s)	58
Fsp4HI	GCNGC	2 cut(s)	311, 314
FspBI	CTAG	2 cut(s)	197, 333
GluI	GCNGC	2 cut(s)	311, 314
GsuI	CTGGAG	2 cut(s)	81, 396
HaeIII	GGCC	1 cut(s)	5
Hin1II	CATG	1 cut(s)	186
HinfI	GANTC	6 cut(s)	14, 88, 94, 128, 200, 380
Hpy166II	GTNNAC	1 cut(s)	217
Hpy188I	TCNGA	6 cut(s)	13, 93, 139, 235, 280, 342
Hpy188III	TCNNGA	1 cut(s)	287
Hpy8I	GTNNAC	1 cut(s)	217
Hpy99I	CGWCG	1 cut(s)	56
HpyAV	CCTTC	3 cut(s)	163, 401, 406
HpyCH4IV	ACGT	1 cut(s)	369
HpyCH4V	TGCA	2 cut(s)	108, 358
HpyF10VI	GCNNNNNNNGC	1 cut(s)	202
HpyF3I	CTNAG	3 cut(s)	138, 293, 399
HpySE526I	ACGT	1 cut(s)	369
Hsp92II	CATG	1 cut(s)	186
Kzo9I	GATC	1 cut(s)	275
LmnI	GCTCC	3 cut(s)	46, 61, 265
LpnPI	CCDG	6 cut(s)	111, 118, 118, 145, 350, 360
Lsp1109I	GCAGC	2 cut(s)	322, 325
MaeI	CTAG	2 cut(s)	197, 333
MaeII	ACGT	1 cut(s)	369
MaeIII	GTNAC	3 cut(s)	325, 360, 370
MalI	GATC	1 cut(s)	277
MbiI	CCGCTC	1 cut(s)	67
MboI	GATC	1 cut(s)	275
MboII	GAAGA	4 cut(s)	20, 178, 296, 329
MlsI	TGGCCA	1 cut(s)	5
MluCI	AATT	3 cut(s)	153, 281, 343
MluNI	TGGCCA	1 cut(s)	5
MlyI	GAGTC	2 cut(s)	88, 194
MnlI	CCTC	8 cut(s)	42, 54, 69, 72, 109, 180, 288, 394
Mox20I	TGGCCA	1 cut(s)	5
MscI	TGGCCA	1 cut(s)	5
MseI	TTAA	1 cut(s)	210
MslI	CAYNNNNRTG	1 cut(s)	260
Msp20I	TGGCCA	1 cut(s)	5
MspR9I	CCNGG	1 cut(s)	133
MvaI	CCWGG	1 cut(s)	133
MvnI	CGCG	1 cut(s)	222
MwoI	GCNNNNNNNGC	1 cut(s)	202
NdeII	GATC	1 cut(s)	275
NlaIII	CATG	1 cut(s)	186
NlaIV	GGNNCC	1 cut(s)	42
NmuCI	GTSAC	1 cut(s)	370
OliI	CACNNNNGTG	1 cut(s)	260
PfeI	GAWTC	4 cut(s)	14, 88, 128, 380
PkrI	GCNGC	2 cut(s)	312, 315
PleI	GAGTC	2 cut(s)	88, 194
PpsI	GAGTC	2 cut(s)	88, 194
Psp6I	CCWGG	1 cut(s)	131
PspGI	CCWGG	1 cut(s)	131
PspN4I	GGNNCC	1 cut(s)	42
PspPI	GGNCC	1 cut(s)	297
PstI	CTGCAG	1 cut(s)	360
RseI	CAYNNNNRTG	1 cut(s)	260
SaqAI	TTAA	1 cut(s)	210
SatI	GCNGC	2 cut(s)	311, 314
Sau3AI	GATC	1 cut(s)	275
Sau96I	GGNCC	1 cut(s)	297
SchI	GAGTC	2 cut(s)	88, 194
ScrFI	CCNGG	1 cut(s)	133
SetI	ASST	7 cut(s)	137, 144, 191, 198, 216, 372, 405
SfcI	CTRYAG	1 cut(s)	356
SinI	GGWCC	1 cut(s)	297
SmiMI	CAYNNNNRTG	1 cut(s)	260
SmlI	CTYRAG	1 cut(s)	239
SmoI	CTYRAG	1 cut(s)	239
SpeI	ACTAGT	1 cut(s)	332
Sse9I	AATT	3 cut(s)	153, 281, 343
SsiI	CCGC	3 cut(s)	21, 65, 220
SspMI	CTAG	2 cut(s)	197, 333
StyD4I	CCNGG	1 cut(s)	131
StyI	CCWWGG	1 cut(s)	384
TaiI	ACGT	1 cut(s)	372
TaqI	TCGA	1 cut(s)	274
TasI	AATT	3 cut(s)	153, 281, 343
TfiI	GAWTC	4 cut(s)	14, 88, 128, 380
Tru1I	TTAA	1 cut(s)	210
Tru9I	TTAA	1 cut(s)	210
TscAI	CASTG	1 cut(s)	262
TseFI	GTSAC	1 cut(s)	370
TseI	GCWGC	2 cut(s)	310, 313
Tsp45I	GTSAC	1 cut(s)	370
TspDTI	ATGAA	1 cut(s)	240
TspGWI	ACGGA	1 cut(s)	40
TspRI	CASTG	1 cut(s)	262
VpaK11BI	GGWCC	1 cut(s)	297
XapI	RAATTY	3 cut(s)	153, 281, 343
XmiI	GTMKAC	1 cut(s)	216
XspI	CTAG	2 cut(s)	197, 333

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.