Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb4

Orthogroup ID

OG0002436

Physical Location & Seq

Genomic Coordinates Forward (+)

21918635 .. 21921102

Gene Structure 2468 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_4g17930.t2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 453 bp

ATGGCCAACATCTCCGATTCCACCGCCTCTCTTCCTCCGTCGGCTCCGCCTCCTCCTCCGCTCTCCTCTACAACAAAGGAGAATCTGACTCCGGTTGCCTGCAAGATTGAGGAATTGAATGAATCGAGGGCTGAGCTGCTTGGCAGAATTCAAGGCTTGAAGAAGGATTTGCAAACATGGAGGTCAAAGCTAGACTCACAAGTTAAGGTCTACCGTGATGAACTTTCGGAACTCAAACAATCTCTCAACACTGAAGTGGAGCAACTTCGATCAGAATTTCGAGAACTGAGGACCACTCTTCAGCAGCAGCAAGATGATGTAACTACTAGTCTTCGAAACTTTGGGCTAGAGGACGTGAAAGGAAATTCCAAGGCTGATGAAGTAACCCTTGAGGAACACAAAGAATCAGATGCATCAACCCCAGAGGATGATGGCAAAGAAGCTGAAAGCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

151

Amino Acids

16.74

Weight (kDa)

4.62

Isoelectric Point (pI)

68.87

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002436)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G15790 AT4G15790
fragaria_vesca	FvH4_4g17930 FvH4_4g17930 FvH4_4g17940 FvH4_4g17940 FvH4_4g17940
malus_domestica	MD13G1169200.v1.1 MD13G1169300.v1.1 MD16G1170500.v1.1
prunus_persica	Prupe.1G137600_v2.0.a1 Prupe.1G137600_v2.0.a1 Prupe.1G137600_v2.0.a1 Prupe.1G137900_v2.0.a1
pyrus_communis	pycom13g14490 pycom16g14290
rosa_chinensis	RchiOBHm_Chr4g0422101 RchiOBHm_Chr4g0422111
rosa_laevigata	RLG00000007635
rosa_multiflora	Rmu_sc0009286.1_g000003 Rmu_sc0009286.1_g000004
rosa_roxburghii	Rroxscaffold_3G00224970 Rroxscaffold_4G00330840 Rroxscaffold_5G00364180 Rroxscaffold_5G00364190 Rroxscaffold_6G00405940
rosa_rugosa	Rorug04G0177200 Rorug04G0177300 Rorug04G0177400 Rorug04G0177500
rosa_samantha	Rh4AG236800 Rh4AG236900 Rh4BG239600 Rh4BG239700 Rh4CG251500 Rh4CG251600 Rh4DG235700 Rh4DG235800 Rh6BG107100
rosa_wichuraiana	Rw4G020480 Rw4G020490

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	61
AccI	GTMKAC	1 cut(s)	210
AciI	CCGC	3 cut(s)	24, 47, 59
AcoI	YGGCCR	1 cut(s)	3
AcsI	RAATTY	3 cut(s)	147, 275, 364
AcuI	CTGAAG	2 cut(s)	273, 284
AgsI	TTSAA	3 cut(s)	118, 152, 160
AhlI	ACTAGT	1 cut(s)	326
AjiI	CACGTC	1 cut(s)	355
AleI	CACNNNNGTG	1 cut(s)	254
AluBI	AGCT	4 cut(s)	136, 190, 443, 450
AluI	AGCT	4 cut(s)	136, 190, 443, 450
AoxI	GGCC	1 cut(s)	3
ApeKI	GCWGC	3 cut(s)	136, 304, 307
ApoI	RAATTY	3 cut(s)	147, 275, 364
AspS9I	GGNCC	1 cut(s)	291
AsuII	TTCGAA	1 cut(s)	334
AvaII	GGWCC	1 cut(s)	291
BalI	TGGCCA	1 cut(s)	5
BbsI	GAAGAC	1 cut(s)	323
BbvI	GCAGC	3 cut(s)	123, 316, 319
BccI	CCATC	1 cut(s)	425
BcuI	ACTAGT	1 cut(s)	326
BfaI	CTAG	4 cut(s)	191, 327, 347, 451
BisI	GCNGC	3 cut(s)	137, 305, 308
BlpI	GCTNAGC	1 cut(s)	132
BlsI	GCNGC	3 cut(s)	138, 306, 309
Bme18I	GGWCC	1 cut(s)	291
BmgBI	CACGTC	1 cut(s)	355
BmgT120I	GGNCC	1 cut(s)	291
BmiI	GGNNCC	1 cut(s)	45
BmsI	GCATC	2 cut(s)	400, 422
BpiI	GAAGAC	1 cut(s)	323
BplI	GAGNNNNNCTC	2 cut(s)	280, 312
Bpu1102I	GCTNAGC	1 cut(s)	132
Bpu14I	TTCGAA	1 cut(s)	334
BpuEI	CTTGAG	1 cut(s)	410
BsaJI	CCNNGG	1 cut(s)	369
BsaWI	WCCGGW	1 cut(s)	91
BseDI	CCNNGG	1 cut(s)	369
BseGI	GGATG	1 cut(s)	433
BseMII	CTCAG	2 cut(s)	123, 278
BseRI	GAGGAG	3 cut(s)	42, 45, 55
BseXI	GCAGC	3 cut(s)	123, 316, 319
BshFI	GGCC	1 cut(s)	5
BsiSI	CCGG	1 cut(s)	92
BsnI	GGCC	1 cut(s)	5
Bsp119I	TTCGAA	1 cut(s)	334
Bsp143I	GATC	1 cut(s)	269
Bsp1720I	GCTNAGC	1 cut(s)	132
BspACI	CCGC	3 cut(s)	24, 47, 59
BspANI	GGCC	1 cut(s)	5
BspCNI	CTCAG	2 cut(s)	124, 279
BspLI	GGNNCC	1 cut(s)	45
BspT104I	TTCGAA	1 cut(s)	334
BsrBI	CCGCTC	1 cut(s)	61
BssECI	CCNNGG	1 cut(s)	369
BssMI	GATC	1 cut(s)	269
BssT1I	CCWWGG	1 cut(s)	369
Bst4CI	ACNGT	1 cut(s)	215
Bst6I	CTCTTC	2 cut(s)	36, 303
BstBI	TTCGAA	1 cut(s)	334
BstC8I	GCNNGC	1 cut(s)	100
BstDEI	CTNAG	2 cut(s)	132, 287
BstF5I	GGATG	1 cut(s)	433
BstKTI	GATC	1 cut(s)	272
BstMBI	GATC	1 cut(s)	269
BstV1I	GCAGC	3 cut(s)	123, 316, 319
BstV2I	GAAGAC	1 cut(s)	323
BsuRI	GGCC	1 cut(s)	5
BtrI	CACGTC	1 cut(s)	355
BtsCI	GGATG	1 cut(s)	433
BtsIMutI	CAGTG	1 cut(s)	249
Cac8I	GCNNGC	1 cut(s)	100
Cfr13I	GGNCC	1 cut(s)	291
CviAII	CATG	1 cut(s)	177
DdeI	CTNAG	2 cut(s)	132, 287
DpnI	GATC	1 cut(s)	271
DpnII	GATC	1 cut(s)	269
EaeI	YGGCCR	1 cut(s)	3
Eam1104I	CTCTTC	2 cut(s)	36, 303
EarI	CTCTTC	2 cut(s)	36, 303
EciI	GGCGGA	1 cut(s)	36
Eco130I	CCWWGG	1 cut(s)	369
Eco47I	GGWCC	1 cut(s)	291
Eco57I	CTGAAG	2 cut(s)	273, 284
EcoRI	GAATTC	1 cut(s)	147
EcoT14I	CCWWGG	1 cut(s)	369
EcoT22I	ATGCAT	1 cut(s)	415
ErhI	CCWWGG	1 cut(s)	369
FaeI	CATG	1 cut(s)	180
FaiI	YATR	1 cut(s)	178
FalI	AAGNNNNNCTT	2 cut(s)	372, 404
FatI	CATG	1 cut(s)	176
FblI	GTMKAC	1 cut(s)	210
Fnu4HI	GCNGC	3 cut(s)	137, 305, 308
FokI	GGATG	1 cut(s)	440
Fsp4HI	GCNGC	3 cut(s)	137, 305, 308
FspBI	CTAG	4 cut(s)	191, 327, 347, 451
GluI	GCNGC	3 cut(s)	137, 305, 308
HaeIII	GGCC	1 cut(s)	5
HapII	CCGG	1 cut(s)	92
Hin1II	CATG	1 cut(s)	180
HinfI	GANTC	6 cut(s)	17, 82, 88, 122, 194, 404
HpaII	CCGG	1 cut(s)	92
Hpy166II	GTNNAC	1 cut(s)	211
Hpy188I	TCNGA	5 cut(s)	16, 87, 229, 274, 409
Hpy188III	TCNNGA	1 cut(s)	281
Hpy8I	GTNNAC	1 cut(s)	211
Hpy99I	CGWCG	1 cut(s)	43
HpyAV	CCTTC	1 cut(s)	157
HpyCH4III	ACNGT	1 cut(s)	215
HpyCH4IV	ACGT	1 cut(s)	354
HpyCH4V	TGCA	3 cut(s)	102, 172, 413
HpyF3I	CTNAG	2 cut(s)	132, 287
HpySE526I	ACGT	1 cut(s)	354
Hsp92II	CATG	1 cut(s)	180
Kzo9I	GATC	1 cut(s)	269
LmnI	GCTCC	2 cut(s)	49, 259
LpnPI	CCDG	3 cut(s)	105, 112, 435
Lsp1109I	GCAGC	3 cut(s)	123, 316, 319
LweI	GCATC	2 cut(s)	400, 422
MaeI	CTAG	4 cut(s)	191, 327, 347, 451
MaeII	ACGT	1 cut(s)	354
MaeIII	GTNAC	2 cut(s)	319, 382
MalI	GATC	1 cut(s)	271
MbiI	CCGCTC	1 cut(s)	61
MboI	GATC	1 cut(s)	269
MboII	GAAGA	4 cut(s)	23, 172, 290, 323
MlsI	TGGCCA	1 cut(s)	5
MluCI	AATT	4 cut(s)	113, 147, 275, 364
MluNI	TGGCCA	1 cut(s)	5
MlyI	GAGTC	2 cut(s)	82, 188
Mox20I	TGGCCA	1 cut(s)	5
Mph1103I	ATGCAT	1 cut(s)	415
MscI	TGGCCA	1 cut(s)	5
MseI	TTAA	1 cut(s)	204
MslI	CAYNNNNRTG	1 cut(s)	254
Msp20I	TGGCCA	1 cut(s)	5
MspI	CCGG	1 cut(s)	92
NdeII	GATC	1 cut(s)	269
NlaIII	CATG	1 cut(s)	180
NlaIV	GGNNCC	1 cut(s)	45
NsiI	ATGCAT	1 cut(s)	415
NspV	TTCGAA	1 cut(s)	334
OliI	CACNNNNGTG	1 cut(s)	254
PfeI	GAWTC	4 cut(s)	17, 82, 122, 404
PkrI	GCNGC	3 cut(s)	138, 306, 309
PleI	GAGTC	2 cut(s)	82, 188
PpsI	GAGTC	2 cut(s)	82, 188
PspN4I	GGNNCC	1 cut(s)	45
PspPI	GGNCC	1 cut(s)	291
RseI	CAYNNNNRTG	1 cut(s)	254
SaqAI	TTAA	1 cut(s)	204
SatI	GCNGC	3 cut(s)	137, 305, 308
Sau3AI	GATC	1 cut(s)	269
Sau96I	GGNCC	1 cut(s)	291
SchI	GAGTC	2 cut(s)	82, 188
SetI	ASST	7 cut(s)	138, 185, 192, 210, 357, 445, 452
SfaNI	GCATC	2 cut(s)	400, 422
SfuI	TTCGAA	1 cut(s)	334
SinI	GGWCC	1 cut(s)	291
SmiMI	CAYNNNNRTG	1 cut(s)	254
SmlI	CTYRAG	1 cut(s)	389
SmoI	CTYRAG	1 cut(s)	389
SpeI	ACTAGT	1 cut(s)	326
Sse9I	AATT	4 cut(s)	113, 147, 275, 364
SsiI	CCGC	3 cut(s)	24, 47, 59
SspMI	CTAG	4 cut(s)	191, 327, 347, 451
StyI	CCWWGG	1 cut(s)	369
TaaI	ACNGT	1 cut(s)	215
TaiI	ACGT	1 cut(s)	357
TaqI	TCGA	4 cut(s)	125, 268, 280, 334
TasI	AATT	4 cut(s)	113, 147, 275, 364
TfiI	GAWTC	4 cut(s)	17, 82, 122, 404
Tru1I	TTAA	1 cut(s)	204
Tru9I	TTAA	1 cut(s)	204
TscAI	CASTG	1 cut(s)	256
TseI	GCWGC	3 cut(s)	136, 304, 307
TspDTI	ATGAA	3 cut(s)	135, 234, 393
TspGWI	ACGGA	1 cut(s)	27
TspRI	CASTG	1 cut(s)	256
VpaK11BI	GGWCC	1 cut(s)	291
XapI	RAATTY	3 cut(s)	147, 275, 364
XmiI	GTMKAC	1 cut(s)	210
XspI	CTAG	4 cut(s)	191, 327, 347, 451
Zsp2I	ATGCAT	1 cut(s)	415

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.