Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0009286.1

Orthogroup ID

OG0002436

Physical Location & Seq

Genomic Coordinates Forward (+)

15474 .. 16550

Gene Structure 1077 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0009286.1_g000004.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 891 bp

atggcttctgtactgtctgctcaagaagcctcacagctactcaaatgtcagacatggatcttgaaagtgtttatccactgtgaaggttgcaagaggaaagtgaagaaagttctactgggaattgatggtgtttacaccacatctattgaggcagagcaaaacagagtcacagtcactggagacattgacgttcagaccctcatcaagaagctgattgtaaaaactggtaaacatgccgagctatggccagaaaatctcaccaaaaaagaaaagaccaagcctgtgaaagccaagaacaatgacaaacagaaatccgcagaaatttgccaaagtaagcagagtactacatgtgacaaagttggagtggtcaggctaaacagagcaagtgagggtgacacagctaagtttaacagagaggaacaatgtcaagtatcaaagaagggtcacattctgccggagaaatctcctgatggccatgattctcaggccagggatcttcagctcggtgaaagtgaaaaagggcgtgttagtggcaaaaagaacaggaaaggccaaagagatgatttgggttcaacaagctcctgtggacctgcaagcataggagctcaacattatggtgatcacactgctggtccagttgatctcagccatatcatcgcaaacatgtattcgatggattaccactctcatctgatgttcaatggaagtgacattacagcagctgctacagcactgcctagcaagagcttggctccttactattgttatggtccatcatcacagtacaaggatgcagctagtggtgaacagactgatcaagtgaaagcaacatttcttaacagtgtgcagattttcagtgatgaaaatgctaatggctgttttattatgtga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HMA

Protein Analysis

296

Amino Acids

32.36

Weight (kDa)

8.72

Isoelectric Point (pI)

33.79

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002436)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G15790 AT4G15790
fragaria_vesca	FvH4_4g17930 FvH4_4g17930 FvH4_4g17940 FvH4_4g17940 FvH4_4g17940
malus_domestica	MD13G1169200.v1.1 MD13G1169300.v1.1 MD16G1170500.v1.1
prunus_persica	Prupe.1G137600_v2.0.a1 Prupe.1G137600_v2.0.a1 Prupe.1G137600_v2.0.a1 Prupe.1G137900_v2.0.a1
pyrus_communis	pycom13g14490 pycom16g14290
rosa_chinensis	RchiOBHm_Chr4g0422101 RchiOBHm_Chr4g0422111
rosa_laevigata	RLG00000007635
rosa_multiflora	Rmu_sc0009286.1_g000003 Rmu_sc0009286.1_g000004
rosa_roxburghii	Rroxscaffold_3G00224970 Rroxscaffold_4G00330840 Rroxscaffold_5G00364180 Rroxscaffold_5G00364190 Rroxscaffold_6G00405940
rosa_rugosa	Rorug04G0177200 Rorug04G0177300 Rorug04G0177400 Rorug04G0177500
rosa_samantha	Rh4AG236800 Rh4AG236900 Rh4BG239600 Rh4BG239700 Rh4CG251500 Rh4CG251600 Rh4DG235700 Rh4DG235800 Rh6BG107100
rosa_wichuraiana	Rw4G020480 Rw4G020490

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	598
AciI	CCGC	1 cut(s)	315
AclWI	GGATC	2 cut(s)	65, 501
AcoI	YGGCCR	2 cut(s)	245, 472
AcsI	RAATTY	1 cut(s)	321
AcuI	CTGAAG	1 cut(s)	482
AfaI	GTAC	3 cut(s)	12, 343, 785
AfiI	CCNNNNNNNGG	1 cut(s)	243
AflIII	ACRYGT	2 cut(s)	347, 663
AgsI	TTSAA	3 cut(s)	64, 573, 700
AjnI	CCWGG	1 cut(s)	488
Alw21I	GWGCWC	1 cut(s)	607
Alw26I	GTCTC	1 cut(s)	174
AlwI	GGATC	2 cut(s)	65, 501
AlwNI	CAGNNNCTG	2 cut(s)	176, 722
AoxI	GGCC	4 cut(s)	245, 472, 486, 550
ApeKI	GCWGC	3 cut(s)	719, 722, 794
ApoI	RAATTY	1 cut(s)	321
AspS9I	GGNCC	3 cut(s)	587, 632, 770
AsuHPI	GGTGA	5 cut(s)	250, 404, 518, 629, 815
AvaII	GGWCC	3 cut(s)	587, 632, 770
BalI	TGGCCA	2 cut(s)	247, 474
BanII	GRGCYC	1 cut(s)	607
BarI	GAAGNNNNNNTAC	2 cut(s)	697, 729
Bbv12I	GWGCWC	1 cut(s)	607
BbvI	GCAGC	3 cut(s)	709, 731, 806
BccI	CCATC	4 cut(s)	119, 464, 667, 781
BciT130I	CCWGG	1 cut(s)	490
BclI	TGATCA	2 cut(s)	619, 814
BcoDI	GTCTC	1 cut(s)	174
BfaI	CTAG	2 cut(s)	738, 798
BfmI	CTRYAG	1 cut(s)	726
BfuAI	ACCTGC	1 cut(s)	598
BisI	GCNGC	3 cut(s)	720, 723, 795
BlsI	GCNGC	3 cut(s)	721, 724, 796
BmcAI	AGTACT	1 cut(s)	343
Bme1390I	CCNGG	1 cut(s)	490
Bme18I	GGWCC	3 cut(s)	587, 632, 770
BmgT120I	GGNCC	3 cut(s)	587, 632, 770
BmiI	GGNNCC	1 cut(s)	753
BmrFI	CCNGG	1 cut(s)	490
BmrI	ACTGGG	1 cut(s)	125
BmsI	GCATC	1 cut(s)	781
BmuI	ACTGGG	1 cut(s)	125
BplI	GAGNNNNNCTC	2 cut(s)	736, 768
BpmI	CTGGAG	1 cut(s)	198
BpuEI	CTTGAG	1 cut(s)	6
BsaJI	CCNNGG	1 cut(s)	489
Bsc4I	CCNNNNNNNGG	1 cut(s)	243
Bse1I	ACTGG	4 cut(s)	120, 181, 229, 635
BseBI	CCWGG	1 cut(s)	490
BseDI	CCNNGG	1 cut(s)	489
BseGI	GGATG	1 cut(s)	796
BseLI	CCNNNNNNNGG	1 cut(s)	243
BseMII	CTCAG	2 cut(s)	497, 658
BseNI	ACTGG	4 cut(s)	120, 181, 229, 635
BseXI	GCAGC	3 cut(s)	709, 731, 806
BsgI	GTGCAG	1 cut(s)	866
BshFI	GGCC	4 cut(s)	247, 474, 488, 552
BsiHKAI	GWGCWC	1 cut(s)	607
BsiSI	CCGG	1 cut(s)	455
BslI	CCNNNNNNNGG	1 cut(s)	243
BsmAI	GTCTC	1 cut(s)	174
BsnI	GGCC	4 cut(s)	247, 474, 488, 552
Bsp1286I	GDGCHC	1 cut(s)	607
Bsp143I	GATC	5 cut(s)	57, 493, 619, 640, 814
BspACI	CCGC	1 cut(s)	315
BspANI	GGCC	4 cut(s)	247, 474, 488, 552
BspCNI	CTCAG	2 cut(s)	496, 657
BspLI	GGNNCC	1 cut(s)	753
BspMI	ACCTGC	1 cut(s)	598
BspPI	GGATC	2 cut(s)	65, 501
BsrI	ACTGG	4 cut(s)	120, 181, 229, 635
BssECI	CCNNGG	1 cut(s)	489
BssMI	GATC	5 cut(s)	57, 493, 619, 640, 814
Bst2UI	CCWGG	1 cut(s)	490
Bst4CI	ACNGT	5 cut(s)	15, 80, 172, 783, 842
BstC8I	GCNNGC	1 cut(s)	595
BstDEI	CTNAG	3 cut(s)	402, 483, 644
BstF5I	GGATG	1 cut(s)	796
BstKTI	GATC	5 cut(s)	60, 496, 622, 643, 817
BstMAI	GTCTC	1 cut(s)	174
BstMBI	GATC	5 cut(s)	57, 493, 619, 640, 814
BstMWI	GCNNNNNNNGC	2 cut(s)	26, 728
BstNI	CCWGG	1 cut(s)	490
BstNSI	RCATGY	3 cut(s)	236, 351, 667
BstSCI	CCNGG	1 cut(s)	488
BstSFI	CTRYAG	1 cut(s)	726
BstV1I	GCAGC	3 cut(s)	709, 731, 806
BstX2I	RGATCY	2 cut(s)	57, 493
BstYI	RGATCY	2 cut(s)	57, 493
BsuRI	GGCC	4 cut(s)	247, 474, 488, 552
BtgZI	GCGATG	1 cut(s)	640
BtsCI	GGATG	1 cut(s)	796
BtsI	GCAGTG	2 cut(s)	624, 731
BtsIMutI	CAGTG	6 cut(s)	76, 174, 624, 731, 847, 862
BveI	ACCTGC	1 cut(s)	598
Cac8I	GCNNGC	1 cut(s)	595
CaiI	CAGNNNCTG	2 cut(s)	176, 722
Cfr13I	GGNCC	3 cut(s)	587, 632, 770
Csp6I	GTAC	3 cut(s)	11, 342, 784
CspCI	CAANNNNNGTGG	2 cut(s)	127, 162
CviAII	CATG	5 cut(s)	54, 233, 348, 476, 664
CviQI	GTAC	3 cut(s)	11, 342, 784
DdeI	CTNAG	3 cut(s)	402, 483, 644
DpnI	GATC	5 cut(s)	59, 495, 621, 642, 816
DpnII	GATC	5 cut(s)	57, 493, 619, 640, 814
EaeI	YGGCCR	2 cut(s)	245, 472
Ecl136II	GAGCTC	1 cut(s)	605
Eco24I	GRGCYC	1 cut(s)	607
Eco47I	GGWCC	3 cut(s)	587, 632, 770
Eco53kI	GAGCTC	1 cut(s)	605
Eco57I	CTGAAG	1 cut(s)	482
EcoICRI	GAGCTC	1 cut(s)	605
EcoRII	CCWGG	1 cut(s)	488
EcoT38I	GRGCYC	1 cut(s)	607
FaeI	CATG	5 cut(s)	57, 236, 351, 479, 667
FatI	CATG	5 cut(s)	53, 232, 347, 475, 663
FbaI	TGATCA	2 cut(s)	619, 814
Fnu4HI	GCNGC	3 cut(s)	720, 723, 795
FokI	GGATG	1 cut(s)	803
FriOI	GRGCYC	1 cut(s)	607
Fsp4HI	GCNGC	3 cut(s)	720, 723, 795
FspBI	CTAG	2 cut(s)	738, 798
GluI	GCNGC	3 cut(s)	720, 723, 795
GsuI	CTGGAG	1 cut(s)	198
HaeIII	GGCC	4 cut(s)	247, 474, 488, 552
HapII	CCGG	1 cut(s)	455
Hin1II	CATG	5 cut(s)	57, 236, 351, 479, 667
HinfI	GANTC	2 cut(s)	165, 479
HpaII	CCGG	1 cut(s)	455
HphI	GGTGA	5 cut(s)	250, 404, 518, 629, 815
Hpy166II	GTNNAC	4 cut(s)	133, 230, 587, 806
Hpy188I	TCNGA	3 cut(s)	51, 195, 693
Hpy188III	TCNNGA	4 cut(s)	23, 61, 205, 467
Hpy8I	GTNNAC	4 cut(s)	133, 230, 587, 806
HpyAV	CCTTC	2 cut(s)	77, 433
HpyCH4III	ACNGT	5 cut(s)	15, 80, 172, 783, 842
HpyCH4IV	ACGT	1 cut(s)	189
HpyCH4V	TGCA	4 cut(s)	90, 593, 794, 847
HpyF10VI	GCNNNNNNNGC	2 cut(s)	26, 728
HpyF3I	CTNAG	3 cut(s)	402, 483, 644
HpySE526I	ACGT	1 cut(s)	189
Hsp92II	CATG	5 cut(s)	57, 236, 351, 479, 667
Ksp22I	TGATCA	2 cut(s)	619, 814
Kzo9I	GATC	5 cut(s)	57, 493, 619, 640, 814
LmnI	GCTCC	3 cut(s)	584, 602, 757
Lsp1109I	GCAGC	3 cut(s)	709, 731, 806
LweI	GCATC	1 cut(s)	781
MaeI	CTAG	2 cut(s)	738, 798
MaeII	ACGT	1 cut(s)	189
MaeIII	GTNAC	6 cut(s)	166, 172, 350, 392, 443, 707
MalI	GATC	5 cut(s)	59, 495, 621, 642, 816
MboI	GATC	5 cut(s)	57, 493, 619, 640, 814
MboII	GAAGA	2 cut(s)	115, 488
MflI	RGATCY	2 cut(s)	57, 493
MhlI	GDGCHC	1 cut(s)	607
MlsI	TGGCCA	2 cut(s)	247, 474
MluCI	AATT	2 cut(s)	120, 321
MluNI	TGGCCA	2 cut(s)	247, 474
MlyI	GAGTC	1 cut(s)	174
MmeI	TCCRAC	1 cut(s)	340
MnlI	CCTC	6 cut(s)	40, 87, 142, 209, 382, 409
Mox20I	TGGCCA	2 cut(s)	247, 474
MscI	TGGCCA	2 cut(s)	247, 474
MseI	TTAA	2 cut(s)	408, 837
MslI	CAYNNNNRTG	1 cut(s)	615
Msp20I	TGGCCA	2 cut(s)	247, 474
MspA1I	CMGCKG	1 cut(s)	722
MspI	CCGG	1 cut(s)	455
MspR9I	CCNGG	1 cut(s)	490
MvaI	CCWGG	1 cut(s)	490
MwoI	GCNNNNNNNGC	2 cut(s)	26, 728
NdeII	GATC	5 cut(s)	57, 493, 619, 640, 814
NlaIII	CATG	5 cut(s)	57, 236, 351, 479, 667
NlaIV	GGNNCC	1 cut(s)	753
NmeAIII	GCCGAG	1 cut(s)	262
NmuCI	GTSAC	6 cut(s)	166, 172, 350, 392, 443, 707
NspI	RCATGY	3 cut(s)	236, 351, 667
PciI	ACATGT	2 cut(s)	347, 663
PfeI	GAWTC	1 cut(s)	479
PkrI	GCNGC	3 cut(s)	721, 724, 796
PleI	GAGTC	1 cut(s)	173
PpsI	GAGTC	1 cut(s)	173
PscI	ACATGT	2 cut(s)	347, 663
Psp124BI	GAGCTC	1 cut(s)	607
Psp6I	CCWGG	1 cut(s)	488
PspGI	CCWGG	1 cut(s)	488
PspN4I	GGNNCC	1 cut(s)	753
PspPI	GGNCC	3 cut(s)	587, 632, 770
PstNI	CAGNNNCTG	2 cut(s)	176, 722
PsuI	RGATCY	2 cut(s)	57, 493
PvuII	CAGCTG	1 cut(s)	722
RsaI	GTAC	3 cut(s)	12, 343, 785
RsaNI	GTAC	3 cut(s)	11, 342, 784
RseI	CAYNNNNRTG	1 cut(s)	615
SacI	GAGCTC	1 cut(s)	607
SaqAI	TTAA	2 cut(s)	408, 837
SatI	GCNGC	3 cut(s)	720, 723, 795
Sau3AI	GATC	5 cut(s)	57, 493, 619, 640, 814
Sau96I	GGNCC	3 cut(s)	587, 632, 770
ScaI	AGTACT	1 cut(s)	343
SchI	GAGTC	1 cut(s)	174
ScrFI	CCNGG	1 cut(s)	490
SduI	GDGCHC	1 cut(s)	607
SfaNI	GCATC	1 cut(s)	781
SfcI	CTRYAG	1 cut(s)	726
SinI	GGWCC	3 cut(s)	587, 632, 770
SmiMI	CAYNNNNRTG	1 cut(s)	615
SmlI	CTYRAG	1 cut(s)	21
SmoI	CTYRAG	1 cut(s)	21
Sse9I	AATT	2 cut(s)	120, 321
SsiI	CCGC	1 cut(s)	315
SspMI	CTAG	2 cut(s)	738, 798
SstI	GAGCTC	1 cut(s)	607
StyD4I	CCNGG	1 cut(s)	488
TaaI	ACNGT	5 cut(s)	15, 80, 172, 783, 842
TaiI	ACGT	1 cut(s)	192
TaqI	TCGA	1 cut(s)	671
TasI	AATT	2 cut(s)	120, 321
TatI	WGTACW	3 cut(s)	10, 341, 783
TfiI	GAWTC	1 cut(s)	479
Tru1I	TTAA	2 cut(s)	408, 837
Tru9I	TTAA	2 cut(s)	408, 837
TscAI	CASTG	6 cut(s)	83, 181, 631, 738, 847, 862
TseFI	GTSAC	6 cut(s)	166, 172, 350, 392, 443, 707
TseI	GCWGC	3 cut(s)	719, 722, 794
Tsp45I	GTSAC	6 cut(s)	166, 172, 350, 392, 443, 707
TspDTI	ATGAA	1 cut(s)	876
TspRI	CASTG	6 cut(s)	83, 181, 631, 738, 847, 862
VpaK11BI	GGWCC	3 cut(s)	587, 632, 770
XapI	RAATTY	1 cut(s)	321
XceI	RCATGY	3 cut(s)	236, 351, 667
XspI	CTAG	2 cut(s)	738, 798
ZrmI	AGTACT	1 cut(s)	343

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.