Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4D

Orthogroup ID

OG0002436

Physical Location & Seq

Genomic Coordinates Forward (+)

44321416 .. 44323632

Gene Structure 2217 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4DG235700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 399 bp

ATGGCCAACTCCGATGCCACCGCTTCTCTTCCTCCATCGGCTCCTCTCTCCGTCGCTCCTCCGCTCTCATCCACAACTAAGGAGAATCTGACTCCAGTTGCCTGCAAGATTGAGGAACTGACGGAATCCAGGTCTGAGCTGTTTGGCAGAATTCAAGGGTTGAAGAAGGATTTACAAACATGGAGGTCAAAGCTAGACTCGCAAGTTAAGGTCTACCGCGATGAACTTTCAGAACTCAAGCAATCGCTCAACACTGAAGTGGAGCAACTTCGATCAGTAAGTTTTGCTCTGGCAACTCTTAGTTTCCAAATTTCATCTAAAAATGTCTTAAATCAACTTGCTGAACTGAAACTAGGAATTTCAAGAACTGAGGACCACTCTTCAGCAGCAGCAAGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

132

Amino Acids

14.45

Weight (kDa)

6.59

Isoelectric Point (pI)

60.98

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0002436)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G15790 AT4G15790
fragaria_vesca	FvH4_4g17930 FvH4_4g17930 FvH4_4g17940 FvH4_4g17940 FvH4_4g17940
malus_domestica	MD13G1169200.v1.1 MD13G1169300.v1.1 MD16G1170500.v1.1
prunus_persica	Prupe.1G137600_v2.0.a1 Prupe.1G137600_v2.0.a1 Prupe.1G137600_v2.0.a1 Prupe.1G137900_v2.0.a1
pyrus_communis	pycom13g14490 pycom16g14290
rosa_chinensis	RchiOBHm_Chr4g0422101 RchiOBHm_Chr4g0422111
rosa_laevigata	RLG00000007635
rosa_multiflora	Rmu_sc0009286.1_g000003 Rmu_sc0009286.1_g000004
rosa_roxburghii	Rroxscaffold_3G00224970 Rroxscaffold_4G00330840 Rroxscaffold_5G00364180 Rroxscaffold_5G00364190 Rroxscaffold_6G00405940
rosa_rugosa	Rorug04G0177200 Rorug04G0177300 Rorug04G0177400 Rorug04G0177500
rosa_samantha	Rh4AG236800 Rh4AG236900 Rh4BG239600 Rh4BG239700 Rh4CG251500 Rh4CG251600 Rh4DG235700 Rh4DG235800 Rh6BG107100
rosa_wichuraiana	Rw4G020480 Rw4G020490

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	64
AccI	GTMKAC	1 cut(s)	213
AccII	CGCG	1 cut(s)	219
AciI	CCGC	3 cut(s)	21, 62, 217
AcoI	YGGCCR	1 cut(s)	3
AcsI	RAATTY	3 cut(s)	150, 309, 357
AcuI	CTGAAG	2 cut(s)	276, 366
AgsI	TTSAA	3 cut(s)	155, 163, 363
AjnI	CCWGG	1 cut(s)	128
AleI	CACNNNNGTG	1 cut(s)	257
AluBI	AGCT	2 cut(s)	139, 193
AluI	AGCT	2 cut(s)	139, 193
AoxI	GGCC	1 cut(s)	3
ApeKI	GCWGC	2 cut(s)	386, 389
ApoI	RAATTY	3 cut(s)	150, 309, 357
AspS9I	GGNCC	1 cut(s)	373
AvaII	GGWCC	1 cut(s)	373
BalI	TGGCCA	1 cut(s)	5
BccI	CCATC	1 cut(s)	43
BciT130I	CCWGG	1 cut(s)	130
BfaI	CTAG	2 cut(s)	194, 353
BisI	GCNGC	2 cut(s)	387, 390
BlsI	GCNGC	2 cut(s)	388, 391
Bme1390I	CCNGG	1 cut(s)	130
Bme18I	GGWCC	1 cut(s)	373
BmgT120I	GGNCC	1 cut(s)	373
BmiI	GGNNCC	1 cut(s)	42
BmrFI	CCNGG	1 cut(s)	130
BmsI	GCATC	1 cut(s)	4
BplI	GAGNNNNNCTC	2 cut(s)	362, 394
BpmI	CTGGAG	1 cut(s)	78
BpuEI	CTTGAG	1 cut(s)	221
Bse1I	ACTGG	1 cut(s)	95
BseBI	CCWGG	1 cut(s)	130
BseGI	GGATG	1 cut(s)	68
BseMII	CTCAG	2 cut(s)	126, 360
BseNI	ACTGG	1 cut(s)	95
BseRI	GAGGAG	2 cut(s)	33, 48
Bsh1236I	CGCG	1 cut(s)	219
BshFI	GGCC	1 cut(s)	5
BsnI	GGCC	1 cut(s)	5
Bsp143I	GATC	1 cut(s)	272
BspACI	CCGC	3 cut(s)	21, 62, 217
BspANI	GGCC	1 cut(s)	5
BspCNI	CTCAG	2 cut(s)	127, 361
BspFNI	CGCG	1 cut(s)	219
BspLI	GGNNCC	1 cut(s)	42
BsrBI	CCGCTC	1 cut(s)	64
BsrI	ACTGG	1 cut(s)	95
BssMI	GATC	1 cut(s)	272
Bst2UI	CCWGG	1 cut(s)	130
Bst6I	CTCTTC	2 cut(s)	33, 385
BstC8I	GCNNGC	1 cut(s)	103
BstDEI	CTNAG	4 cut(s)	78, 135, 299, 369
BstF5I	GGATG	1 cut(s)	68
BstFNI	CGCG	1 cut(s)	219
BstKTI	GATC	1 cut(s)	275
BstMBI	GATC	1 cut(s)	272
BstMWI	GCNNNNNNNGC	1 cut(s)	199
BstNI	CCWGG	1 cut(s)	130
BstSCI	CCNGG	1 cut(s)	128
BstUI	CGCG	1 cut(s)	219
BsuRI	GGCC	1 cut(s)	5
BtgZI	GCGATG	1 cut(s)	234
BtsCI	GGATG	1 cut(s)	68
BtsIMutI	CAGTG	1 cut(s)	252
Cac8I	GCNNGC	1 cut(s)	103
Cfr13I	GGNCC	1 cut(s)	373
CviAII	CATG	1 cut(s)	180
CviJI	RGCY	4 cut(s)	5, 41, 139, 193
CviKI_1	RGCY	4 cut(s)	5, 41, 139, 193
DdeI	CTNAG	4 cut(s)	78, 135, 299, 369
DpnI	GATC	1 cut(s)	274
DpnII	GATC	1 cut(s)	272
EaeI	YGGCCR	1 cut(s)	3
Eam1104I	CTCTTC	2 cut(s)	33, 385
EarI	CTCTTC	2 cut(s)	33, 385
Eco47I	GGWCC	1 cut(s)	373
Eco57I	CTGAAG	2 cut(s)	276, 366
EcoRI	GAATTC	1 cut(s)	150
EcoRII	CCWGG	1 cut(s)	128
FaeI	CATG	1 cut(s)	183
FaiI	YATR	1 cut(s)	181
FatI	CATG	1 cut(s)	179
FblI	GTMKAC	1 cut(s)	213
Fnu4HI	GCNGC	2 cut(s)	387, 390
FokI	GGATG	1 cut(s)	55
Fsp4HI	GCNGC	2 cut(s)	387, 390
FspBI	CTAG	2 cut(s)	194, 353
GluI	GCNGC	2 cut(s)	387, 390
GsuI	CTGGAG	1 cut(s)	78
HaeIII	GGCC	1 cut(s)	5
Hin1II	CATG	1 cut(s)	183
HinfI	GANTC	4 cut(s)	85, 91, 125, 197
Hpy166II	GTNNAC	1 cut(s)	214
Hpy188I	TCNGA	4 cut(s)	13, 90, 136, 232
Hpy188III	TCNNGA	1 cut(s)	363
Hpy8I	GTNNAC	1 cut(s)	214
Hpy99I	CGWCG	1 cut(s)	56
HpyAV	CCTTC	1 cut(s)	160
HpyCH4V	TGCA	1 cut(s)	105
HpyF10VI	GCNNNNNNNGC	1 cut(s)	199
HpyF3I	CTNAG	4 cut(s)	78, 135, 299, 369
Hsp92II	CATG	1 cut(s)	183
Kzo9I	GATC	1 cut(s)	272
LmnI	GCTCC	3 cut(s)	46, 61, 262
LpnPI	CCDG	5 cut(s)	108, 115, 115, 142, 275
LweI	GCATC	1 cut(s)	4
MaeI	CTAG	2 cut(s)	194, 353
MalI	GATC	1 cut(s)	274
MbiI	CCGCTC	1 cut(s)	64
MboI	GATC	1 cut(s)	272
MboII	GAAGA	3 cut(s)	20, 175, 372
MlsI	TGGCCA	1 cut(s)	5
MluCI	AATT	3 cut(s)	150, 309, 357
MluNI	TGGCCA	1 cut(s)	5
MlyI	GAGTC	2 cut(s)	85, 191
MnlI	CCTC	6 cut(s)	42, 54, 69, 106, 177, 364
Mox20I	TGGCCA	1 cut(s)	5
MscI	TGGCCA	1 cut(s)	5
MseI	TTAA	2 cut(s)	207, 329
MslI	CAYNNNNRTG	1 cut(s)	257
Msp20I	TGGCCA	1 cut(s)	5
MspR9I	CCNGG	1 cut(s)	130
MvaI	CCWGG	1 cut(s)	130
MvnI	CGCG	1 cut(s)	219
MwoI	GCNNNNNNNGC	1 cut(s)	199
NdeII	GATC	1 cut(s)	272
NlaIII	CATG	1 cut(s)	183
NlaIV	GGNNCC	1 cut(s)	42
OliI	CACNNNNGTG	1 cut(s)	257
PfeI	GAWTC	2 cut(s)	85, 125
PkrI	GCNGC	2 cut(s)	388, 391
PleI	GAGTC	2 cut(s)	85, 191
PpsI	GAGTC	2 cut(s)	85, 191
Psp6I	CCWGG	1 cut(s)	128
PspGI	CCWGG	1 cut(s)	128
PspN4I	GGNNCC	1 cut(s)	42
PspPI	GGNCC	1 cut(s)	373
RseI	CAYNNNNRTG	1 cut(s)	257
SaqAI	TTAA	2 cut(s)	207, 329
SatI	GCNGC	2 cut(s)	387, 390
Sau3AI	GATC	1 cut(s)	272
Sau96I	GGNCC	1 cut(s)	373
SchI	GAGTC	2 cut(s)	85, 191
ScrFI	CCNGG	1 cut(s)	130
SetI	ASST	5 cut(s)	134, 141, 188, 195, 213
SfaNI	GCATC	1 cut(s)	4
SinI	GGWCC	1 cut(s)	373
SmiMI	CAYNNNNRTG	1 cut(s)	257
SmlI	CTYRAG	1 cut(s)	236
SmoI	CTYRAG	1 cut(s)	236
Sse9I	AATT	3 cut(s)	150, 309, 357
SsiI	CCGC	3 cut(s)	21, 62, 217
SspMI	CTAG	2 cut(s)	194, 353
StyD4I	CCNGG	1 cut(s)	128
TaqI	TCGA	1 cut(s)	271
TasI	AATT	3 cut(s)	150, 309, 357
TfiI	GAWTC	2 cut(s)	85, 125
Tru1I	TTAA	2 cut(s)	207, 329
Tru9I	TTAA	2 cut(s)	207, 329
TscAI	CASTG	1 cut(s)	259
TseI	GCWGC	2 cut(s)	386, 389
TspDTI	ATGAA	2 cut(s)	237, 303
TspGWI	ACGGA	2 cut(s)	40, 137
TspRI	CASTG	1 cut(s)	259
VpaK11BI	GGWCC	1 cut(s)	373
XapI	RAATTY	3 cut(s)	150, 309, 357
XmiI	GTMKAC	1 cut(s)	213
XspI	CTAG	2 cut(s)	194, 353

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.