Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr13

Orthogroup ID

OG0002436

Physical Location & Seq

Genomic Coordinates Reverse (-)

10471122 .. 10472727

Gene Structure 1606 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom13g14490.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 426 bp

ATGGCCGCCGCCAACTCTTCTGATTCCTCAATTCCCTCCACTCCTCCACTCTCCTCCAGCAAGGAGAATGTGACCCCGATTGGCTCCAAGCTTGCGGAATTGAATGAATCGAGGTCTGAGCTACTTGGTAGAATTCAAGGGTTGAAGCAGGATTTGCAAAGTTGGAGGTCGAAGTTAGACACTCAAGTGAAGGTCTACCACGATGAGCTTTCAGAACTCAAGAAATCCCTCAACACTGAAGTGGATCAACTTCGATCTGAATTTCAAGATCTGAGGACCACTCTTCAGCAGCAGCAAGAGGATGTTACAACTAGTCTTAGAAACTTGGGGCTGCAGGATGTCTCAGGAGAGAAAAAAGAAGCCCAAGATACCGAAGAACCAAATGTTTCAACCAAGGTGGATGAGGCCAAAGAAGGTGAAAGCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

142

Amino Acids

15.63

Weight (kDa)

4.67

Isoelectric Point (pI)

61.43

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002436)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G15790 AT4G15790
fragaria_vesca	FvH4_4g17930 FvH4_4g17930 FvH4_4g17940 FvH4_4g17940 FvH4_4g17940
malus_domestica	MD13G1169200.v1.1 MD13G1169300.v1.1 MD16G1170500.v1.1
prunus_persica	Prupe.1G137600_v2.0.a1 Prupe.1G137600_v2.0.a1 Prupe.1G137600_v2.0.a1 Prupe.1G137900_v2.0.a1
pyrus_communis	pycom13g14490 pycom16g14290
rosa_chinensis	RchiOBHm_Chr4g0422101 RchiOBHm_Chr4g0422111
rosa_laevigata	RLG00000007635
rosa_multiflora	Rmu_sc0009286.1_g000003 Rmu_sc0009286.1_g000004
rosa_roxburghii	Rroxscaffold_3G00224970 Rroxscaffold_4G00330840 Rroxscaffold_5G00364180 Rroxscaffold_5G00364190 Rroxscaffold_6G00405940
rosa_rugosa	Rorug04G0177200 Rorug04G0177300 Rorug04G0177400 Rorug04G0177500
rosa_samantha	Rh4AG236800 Rh4AG236900 Rh4BG239600 Rh4BG239700 Rh4CG251500 Rh4CG251600 Rh4DG235700 Rh4DG235800 Rh6BG107100
rosa_wichuraiana	Rw4G020480 Rw4G020490

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	195
AciI	CCGC	3 cut(s)	6, 9, 95
AclWI	GGATC	1 cut(s)	252
AcoI	YGGCCR	1 cut(s)	3
AcsI	RAATTY	2 cut(s)	132, 260
AcuI	CTGAAG	2 cut(s)	258, 269
AgsI	TTSAA	5 cut(s)	103, 137, 145, 266, 390
AhlI	ACTAGT	1 cut(s)	311
AleI	CACNNNNGTG	2 cut(s)	185, 239
AluBI	AGCT	4 cut(s)	91, 121, 208, 423
AluI	AGCT	4 cut(s)	91, 121, 208, 423
Alw26I	GTCTC	1 cut(s)	346
AlwI	GGATC	1 cut(s)	252
AoxI	GGCC	2 cut(s)	3, 405
ApeKI	GCWGC	3 cut(s)	289, 292, 331
ApoI	RAATTY	2 cut(s)	132, 260
AspS9I	GGNCC	1 cut(s)	276
AvaII	GGWCC	1 cut(s)	276
BbvI	GCAGC	3 cut(s)	301, 304, 318
BcoDI	GTCTC	1 cut(s)	346
BcuI	ACTAGT	1 cut(s)	311
BfaI	CTAG	2 cut(s)	312, 424
BfmI	CTRYAG	1 cut(s)	332
BglII	AGATCT	1 cut(s)	268
BisI	GCNGC	5 cut(s)	6, 9, 290, 293, 332
BlsI	GCNGC	5 cut(s)	7, 10, 291, 294, 333
Bme18I	GGWCC	1 cut(s)	276
BmgT120I	GGNCC	1 cut(s)	276
BmiI	GGNNCC	1 cut(s)	85
BplI	GAGNNNNNCTC	2 cut(s)	265, 297
BpmI	CTGGAG	1 cut(s)	40
BpuEI	CTTGAG	2 cut(s)	168, 203
BsaJI	CCNNGG	1 cut(s)	393
BseDI	CCNNGG	1 cut(s)	393
BseGI	GGATG	3 cut(s)	307, 343, 406
BseMII	CTCAG	3 cut(s)	108, 263, 357
BseRI	GAGGAG	2 cut(s)	33, 43
BseXI	GCAGC	3 cut(s)	301, 304, 318
BshFI	GGCC	2 cut(s)	5, 407
BsmAI	GTCTC	1 cut(s)	346
BsnI	GGCC	2 cut(s)	5, 407
Bsp143I	GATC	3 cut(s)	244, 254, 268
BspACI	CCGC	3 cut(s)	6, 9, 95
BspANI	GGCC	2 cut(s)	5, 407
BspCNI	CTCAG	3 cut(s)	109, 264, 356
BspLI	GGNNCC	1 cut(s)	85
BspMAI	CTGCAG	1 cut(s)	336
BspPI	GGATC	1 cut(s)	252
BssECI	CCNNGG	1 cut(s)	393
BssMI	GATC	3 cut(s)	244, 254, 268
BssT1I	CCWWGG	1 cut(s)	393
Bst6I	CTCTTC	2 cut(s)	22, 288
BstAPI	GCANNNNNTGC	1 cut(s)	154
BstC8I	GCNNGC	1 cut(s)	93
BstDEI	CTNAG	4 cut(s)	117, 272, 317, 343
BstF5I	GGATG	3 cut(s)	307, 343, 406
BstKTI	GATC	3 cut(s)	247, 257, 271
BstMAI	GTCTC	1 cut(s)	346
BstMBI	GATC	3 cut(s)	244, 254, 268
BstMWI	GCNNNNNNNGC	1 cut(s)	154
BstSFI	CTRYAG	1 cut(s)	332
BstV1I	GCAGC	3 cut(s)	301, 304, 318
BstX2I	RGATCY	1 cut(s)	268
BstYI	RGATCY	1 cut(s)	268
BsuRI	GGCC	2 cut(s)	5, 407
BtsCI	GGATG	3 cut(s)	307, 343, 406
BtsIMutI	CAGTG	1 cut(s)	234
Cac8I	GCNNGC	1 cut(s)	93
Cfr13I	GGNCC	1 cut(s)	276
CspCI	CAANNNNNGTGG	2 cut(s)	378, 413
CviJI	RGCY	9 cut(s)	5, 84, 91, 121, 208, 331, 362, 407, 423
CviKI_1	RGCY	9 cut(s)	5, 84, 91, 121, 208, 331, 362, 407, 423
DdeI	CTNAG	4 cut(s)	117, 272, 317, 343
DpnI	GATC	3 cut(s)	246, 256, 270
DpnII	GATC	3 cut(s)	244, 254, 268
EaeI	YGGCCR	1 cut(s)	3
Eam1104I	CTCTTC	2 cut(s)	22, 288
EarI	CTCTTC	2 cut(s)	22, 288
Eco130I	CCWWGG	1 cut(s)	393
Eco47I	GGWCC	1 cut(s)	276
Eco57I	CTGAAG	2 cut(s)	258, 269
EcoRI	GAATTC	1 cut(s)	132
EcoT14I	CCWWGG	1 cut(s)	393
ErhI	CCWWGG	1 cut(s)	393
FblI	GTMKAC	1 cut(s)	195
Fnu4HI	GCNGC	5 cut(s)	6, 9, 290, 293, 332
FokI	GGATG	3 cut(s)	314, 350, 413
Fsp4HI	GCNGC	5 cut(s)	6, 9, 290, 293, 332
FspBI	CTAG	2 cut(s)	312, 424
GluI	GCNGC	5 cut(s)	6, 9, 290, 293, 332
GsuI	CTGGAG	1 cut(s)	40
HaeIII	GGCC	2 cut(s)	5, 407
HindIII	AAGCTT	1 cut(s)	89
HinfI	GANTC	2 cut(s)	23, 107
Hpy166II	GTNNAC	1 cut(s)	196
Hpy188I	TCNGA	5 cut(s)	22, 118, 214, 259, 273
Hpy188III	TCNNGA	3 cut(s)	220, 266, 345
Hpy8I	GTNNAC	1 cut(s)	196
HpyAV	CCTTC	2 cut(s)	184, 407
HpyCH4V	TGCA	2 cut(s)	157, 334
HpyF10VI	GCNNNNNNNGC	1 cut(s)	154
HpyF3I	CTNAG	4 cut(s)	117, 272, 317, 343
Kzo9I	GATC	3 cut(s)	244, 254, 268
LmnI	GCTCC	1 cut(s)	89
LpnPI	CCDG	4 cut(s)	70, 134, 320, 330
Lsp1109I	GCAGC	3 cut(s)	301, 304, 318
MaeI	CTAG	2 cut(s)	312, 424
MaeIII	GTNAC	2 cut(s)	70, 304
MalI	GATC	3 cut(s)	246, 256, 270
MboI	GATC	3 cut(s)	244, 254, 268
MboII	GAAGA	3 cut(s)	9, 275, 386
MflI	RGATCY	1 cut(s)	268
MluCI	AATT	4 cut(s)	30, 98, 132, 260
MmeI	TCCRAC	1 cut(s)	143
MslI	CAYNNNNRTG	2 cut(s)	185, 239
MwoI	GCNNNNNNNGC	1 cut(s)	154
NdeII	GATC	3 cut(s)	244, 254, 268
NlaIV	GGNNCC	1 cut(s)	85
NmuCI	GTSAC	1 cut(s)	70
OliI	CACNNNNGTG	2 cut(s)	185, 239
PfeI	GAWTC	2 cut(s)	23, 107
PkrI	GCNGC	5 cut(s)	7, 10, 291, 294, 333
PspN4I	GGNNCC	1 cut(s)	85
PspPI	GGNCC	1 cut(s)	276
PstI	CTGCAG	1 cut(s)	336
PsuI	RGATCY	1 cut(s)	268
RseI	CAYNNNNRTG	2 cut(s)	185, 239
SatI	GCNGC	5 cut(s)	6, 9, 290, 293, 332
Sau3AI	GATC	3 cut(s)	244, 254, 268
Sau96I	GGNCC	1 cut(s)	276
SetI	ASST	9 cut(s)	93, 116, 123, 170, 195, 210, 399, 418, 425
SfcI	CTRYAG	1 cut(s)	332
SinI	GGWCC	1 cut(s)	276
SmiMI	CAYNNNNRTG	2 cut(s)	185, 239
SmlI	CTYRAG	2 cut(s)	183, 218
SmoI	CTYRAG	2 cut(s)	183, 218
SpeI	ACTAGT	1 cut(s)	311
Sse9I	AATT	4 cut(s)	30, 98, 132, 260
SsiI	CCGC	3 cut(s)	6, 9, 95
SspMI	CTAG	2 cut(s)	312, 424
StyI	CCWWGG	1 cut(s)	393
TaqI	TCGA	3 cut(s)	110, 170, 253
TasI	AATT	4 cut(s)	30, 98, 132, 260
TauI	GCSGC	2 cut(s)	8, 11
TfiI	GAWTC	2 cut(s)	23, 107
TscAI	CASTG	1 cut(s)	241
TseFI	GTSAC	1 cut(s)	70
TseI	GCWGC	3 cut(s)	289, 292, 331
Tsp45I	GTSAC	1 cut(s)	70
TspDTI	ATGAA	1 cut(s)	120
TspRI	CASTG	1 cut(s)	241
VpaK11BI	GGWCC	1 cut(s)	276
XapI	RAATTY	2 cut(s)	132, 260
XmiI	GTMKAC	1 cut(s)	195
XspI	CTAG	2 cut(s)	312, 424

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.