Rorug04G0177400

CAP-Gly domain-containing linker protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000004
OG0002436
Physical Location & Seq
Reverse (-)
31096866 .. 31101039
4174 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug04G0177400.1

Sequence Viewer

Length: 534 bp
ATGGTCTCAGAGGATGGAACTGCTCCGGCTACTACACGAATGGGGAGAGGGAATTTCAGTAGCAAGATGATCGATTTAGCTATGAAGACCACCTCAAACTCTTCGTCGACAACTCTAGATCGATCAAGACCAAGCTTACAGGACATCTACAATCATTTTGTAAGTGATGCAACTGGCCGGAGGAGCAACTCTATGCAAACAGAGATAGGGGTCGGAATTCATGGTGTCCTACTTTTCATAACATTGATTGGAAAGAGAACGGGGGAAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGATCCGACCAACAGCAGAGAGTTTCTCCACTGTTTGAGATTTGCAATCGACATCAATCCGGACAAAGATTGGGTGAAGGAATGCATGTCAGCCTTGCTGCGTTTTGCGAAGAGGCCTCATTTGAGCGAGCAAAAAAATGGGTGCTAGAACTGAAATCACAAGGTATTGCTCGCACTTTCTTGCTGTCTAAACTCACTCAGTCCTTGGCTGCTTTAAACAATTTTAGGCTATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

177

Amino Acids

18.9

Weight (kDa)

9.62

Isoelectric Point (pI)

54.09

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 107
AccIII TCCGGA 1 cut(s) 359
AclWI GGATC 2 cut(s) 297, 310
AcoI YGGCCR 1 cut(s) 175
AcsI RAATTY 2 cut(s) 52, 216
AluBI AGCT 2 cut(s) 80, 135
AluI AGCT 2 cut(s) 80, 135
Alw26I GTCTC 1 cut(s) 10
AlwI GGATC 2 cut(s) 297, 310
Aor13HI TCCGGA 1 cut(s) 359
AoxI GGCC 2 cut(s) 175, 414
ApeKI GCWGC 2 cut(s) 398, 509
ApoI RAATTY 2 cut(s) 52, 216
ArsI GACNNNNNNTTYG 2 cut(s) 89, 121
AsuHPI GGTGA 1 cut(s) 386
BamHI GGATCC 1 cut(s) 302
BbsI GAAGAC 1 cut(s) 92
BbvI GCAGC 2 cut(s) 385, 496
BccI CCATC 1 cut(s) 8
BcgI CGANNNNNNTGC 2 cut(s) 52, 86
BcoDI GTCTC 1 cut(s) 10
BfaI CTAG 2 cut(s) 116, 446
BisI GCNGC 2 cut(s) 399, 510
BlsI GCNGC 2 cut(s) 400, 511
BmiI GGNNCC 1 cut(s) 304
BmsI GCATC 1 cut(s) 157
BpiI GAAGAC 1 cut(s) 92
BplI GAGNNNNNCTC 2 cut(s) 310, 342
Bsa29I ATCGAT 2 cut(s) 72, 121
BsaI GGTCTC 1 cut(s) 10
BsaJI CCNNGG 1 cut(s) 504
BsaWI WCCGGW 1 cut(s) 359
Bse1I ACTGG 1 cut(s) 178
BseAI TCCGGA 1 cut(s) 359
BseCI ATCGAT 2 cut(s) 72, 121
BseDI CCNNGG 1 cut(s) 504
BseGI GGATG 1 cut(s) 19
BseMII CTCAG 2 cut(s) 21, 512
BseNI ACTGG 1 cut(s) 178
BseXI GCAGC 2 cut(s) 385, 496
BshFI GGCC 2 cut(s) 177, 416
BshVI ATCGAT 2 cut(s) 72, 121
BsiSI CCGG 3 cut(s) 26, 178, 360
BsmAI GTCTC 1 cut(s) 10
BsmI GAATGC 1 cut(s) 387
BsnI GGCC 2 cut(s) 177, 416
Bso31I GGTCTC 1 cut(s) 10
Bsp13I TCCGGA 1 cut(s) 359
Bsp143I GATC 4 cut(s) 69, 118, 122, 302
BspANI GGCC 2 cut(s) 177, 416
BspCNI CTCAG 2 cut(s) 20, 511
BspDI ATCGAT 2 cut(s) 72, 121
BspEI TCCGGA 1 cut(s) 359
BspLI GGNNCC 1 cut(s) 304
BspPI GGATC 2 cut(s) 297, 310
BspTNI GGTCTC 1 cut(s) 10
BsrI ACTGG 1 cut(s) 178
BssECI CCNNGG 1 cut(s) 504
BssMI GATC 4 cut(s) 69, 118, 122, 302
BssT1I CCWWGG 1 cut(s) 504
Bst4CI ACNGT 1 cut(s) 333
Bst6I CTCTTC 2 cut(s) 106, 405
BstC8I GCNNGC 2 cut(s) 429, 472
BstDEI CTNAG 2 cut(s) 7, 498
BstF5I GGATG 1 cut(s) 19
BstKTI GATC 4 cut(s) 72, 121, 125, 305
BstMAI GTCTC 1 cut(s) 10
BstMBI GATC 4 cut(s) 69, 118, 122, 302
BstMWI GCNNNNNNNGC 1 cut(s) 183
BstNSI RCATGY 1 cut(s) 389
BstV1I GCAGC 2 cut(s) 385, 496
BstV2I GAAGAC 1 cut(s) 92
BstX2I RGATCY 1 cut(s) 302
BstYI RGATCY 1 cut(s) 302
Bsu15I ATCGAT 2 cut(s) 72, 121
BsuRI GGCC 2 cut(s) 177, 416
BsuTUI ATCGAT 2 cut(s) 72, 121
BtsCI GGATG 1 cut(s) 19
BtsIMutI CAGTG 1 cut(s) 329
Cac8I GCNNGC 2 cut(s) 429, 472
ClaI ATCGAT 2 cut(s) 72, 121
CviAII CATG 2 cut(s) 221, 386
CviJI RGCY 8 cut(s) 29, 80, 135, 177, 393, 416, 509, 529
CviKI_1 RGCY 8 cut(s) 29, 80, 135, 177, 393, 416, 509, 529
DdeI CTNAG 2 cut(s) 7, 498
DpnI GATC 4 cut(s) 71, 120, 124, 304
DpnII GATC 4 cut(s) 69, 118, 122, 302
DraI TTTAAA 1 cut(s) 516
EaeI YGGCCR 1 cut(s) 175
Eam1104I CTCTTC 2 cut(s) 106, 405
EarI CTCTTC 2 cut(s) 106, 405
Eco130I CCWWGG 1 cut(s) 504
Eco147I AGGCCT 1 cut(s) 416
Eco31I GGTCTC 1 cut(s) 10
EcoRI GAATTC 1 cut(s) 216
EcoT14I CCWWGG 1 cut(s) 504
EcoT22I ATGCAT 1 cut(s) 387
ErhI CCWWGG 1 cut(s) 504
FaeI CATG 2 cut(s) 224, 389
FaiI YATR 6 cut(s) 83, 194, 222, 239, 387, 532
FatI CATG 2 cut(s) 220, 385
FblI GTMKAC 1 cut(s) 107
Fnu4HI GCNGC 2 cut(s) 399, 510
FokI GGATG 1 cut(s) 26
Fsp4HI GCNGC 2 cut(s) 399, 510
FspBI CTAG 2 cut(s) 116, 446
GluI GCNGC 2 cut(s) 399, 510
HaeIII GGCC 2 cut(s) 177, 416
HapII CCGG 3 cut(s) 26, 178, 360
Hin1II CATG 2 cut(s) 224, 389
HincII GTYRAC 1 cut(s) 108
HindII GTYRAC 1 cut(s) 108
HindIII AAGCTT 1 cut(s) 133
HpaII CCGG 3 cut(s) 26, 178, 360
HphI GGTGA 1 cut(s) 386
Hpy166II GTNNAC 1 cut(s) 108
Hpy188I TCNGA 3 cut(s) 10, 215, 307
Hpy188III TCNNGA 3 cut(s) 116, 126, 360
Hpy8I GTNNAC 1 cut(s) 108
Hpy99I CGWCG 1 cut(s) 109
HpyAV CCTTC 2 cut(s) 260, 371
HpyCH4III ACNGT 1 cut(s) 333
HpyCH4V TGCA 4 cut(s) 170, 196, 345, 385
HpyF10VI GCNNNNNNNGC 1 cut(s) 183
HpyF3I CTNAG 2 cut(s) 7, 498
Hsp92II CATG 2 cut(s) 224, 389
Kpn2I TCCGGA 1 cut(s) 359
Kzo9I GATC 4 cut(s) 69, 118, 122, 302
LmnI GCTCC 2 cut(s) 28, 183
LpnPI CCDG 5 cut(s) 39, 125, 159, 191, 373
Lsp1109I GCAGC 2 cut(s) 385, 496
LweI GCATC 1 cut(s) 157
MaeI CTAG 2 cut(s) 116, 446
MalI GATC 4 cut(s) 71, 120, 124, 304
MboI GATC 4 cut(s) 69, 118, 122, 302
MboII GAAGA 3 cut(s) 93, 97, 422
MflI RGATCY 1 cut(s) 302
MluCI AATT 3 cut(s) 52, 216, 520
MmeI TCCRAC 2 cut(s) 193, 330
Mph1103I ATGCAT 1 cut(s) 387
MroI TCCGGA 1 cut(s) 359
MseI TTAA 1 cut(s) 515
MspI CCGG 3 cut(s) 26, 178, 360
Mva1269I GAATGC 1 cut(s) 387
MwoI GCNNNNNNNGC 1 cut(s) 183
NdeII GATC 4 cut(s) 69, 118, 122, 302
NlaIII CATG 2 cut(s) 224, 389
NlaIV GGNNCC 1 cut(s) 304
NsiI ATGCAT 1 cut(s) 387
NspI RCATGY 1 cut(s) 389
PceI AGGCCT 1 cut(s) 416
PctI GAATGC 1 cut(s) 387
PkrI GCNGC 2 cut(s) 400, 511
PspN4I GGNNCC 1 cut(s) 304
PsuI RGATCY 1 cut(s) 302
SalI GTCGAC 1 cut(s) 106
SaqAI TTAA 1 cut(s) 515
SatI GCNGC 2 cut(s) 399, 510
Sau3AI GATC 4 cut(s) 69, 118, 122, 302
SetI ASST 4 cut(s) 82, 95, 137, 466
SfaNI GCATC 1 cut(s) 157
Sse9I AATT 3 cut(s) 52, 216, 520
SseBI AGGCCT 1 cut(s) 416
SspMI CTAG 2 cut(s) 116, 446
StuI AGGCCT 1 cut(s) 416
StyI CCWWGG 1 cut(s) 504
TaaI ACNGT 1 cut(s) 333
TaqI TCGA 4 cut(s) 72, 107, 121, 349
TasI AATT 3 cut(s) 52, 216, 520
Tru1I TTAA 1 cut(s) 515
Tru9I TTAA 1 cut(s) 515
TscAI CASTG 1 cut(s) 336
TseI GCWGC 2 cut(s) 398, 509
TspDTI ATGAA 3 cut(s) 98, 209, 226
TspRI CASTG 1 cut(s) 336
XapI RAATTY 2 cut(s) 52, 216
XbaI TCTAGA 1 cut(s) 115
XceI RCATGY 1 cut(s) 389
XmiI GTMKAC 1 cut(s) 107
XspI CTAG 2 cut(s) 116, 446
Zsp2I ATGCAT 1 cut(s) 387
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.