Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0002436

Physical Location & Seq

Genomic Coordinates Forward (+)

8982183 .. 8984344

Gene Structure 2162 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT4G15790.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 444 bp

ATGGCGGACCAAACCTCCGATTCAACATCTCCCGTGGCTCCTCTCTCCGTATCTTCTCCTACTGCTACTAAGAAAGATAATACCAATCCTGTTGATTCGAAGCTCACGGAATTGAATGAATCAAGGGCTGAGTTACTAAACAGGATCCAGAATCTGAAACAGGACTTGCAAAGTTGGAGAGGTAAATTGGACACTCAAGTTAAAGTCTACCGTGAGGAGCTCTCTGGGCTAAAGAAGACTCTGAATCTTGAAGTTGAGCAGCTTCGTGAGGAATTCAAAGATCTGAAAACTACCTTGAATCAACAGCAAGATGATGTTTCCGCTAGCCTGAAAAGCTTAGGCCTACAAGATTCAAAAGAGCAAATTGATAAGAGAAGTGAGGTGACAGAAGAGAAAGTGGAAGCTCTATCGACTGATGATAATGCCAAAGAAGCAGAACATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

147

Amino Acids

16.53

Weight (kDa)

4.79

Isoelectric Point (pI)

47.56

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0002436)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G15790 AT4G15790
fragaria_vesca	FvH4_4g17930 FvH4_4g17930 FvH4_4g17940 FvH4_4g17940 FvH4_4g17940
malus_domestica	MD13G1169200.v1.1 MD13G1169300.v1.1 MD16G1170500.v1.1
prunus_persica	Prupe.1G137600_v2.0.a1 Prupe.1G137600_v2.0.a1 Prupe.1G137600_v2.0.a1 Prupe.1G137900_v2.0.a1
pyrus_communis	pycom13g14490 pycom16g14290
rosa_chinensis	RchiOBHm_Chr4g0422101 RchiOBHm_Chr4g0422111
rosa_laevigata	RLG00000007635
rosa_multiflora	Rmu_sc0009286.1_g000003 Rmu_sc0009286.1_g000004
rosa_roxburghii	Rroxscaffold_3G00224970 Rroxscaffold_4G00330840 Rroxscaffold_5G00364180 Rroxscaffold_5G00364190 Rroxscaffold_6G00405940
rosa_rugosa	Rorug04G0177200 Rorug04G0177300 Rorug04G0177400 Rorug04G0177500
rosa_samantha	Rh4AG236800 Rh4AG236900 Rh4BG239600 Rh4BG239700 Rh4CG251500 Rh4CG251600 Rh4DG235700 Rh4DG235800 Rh6BG107100
rosa_wichuraiana	Rw4G020480 Rw4G020490

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	207
AciI	CCGC	2 cut(s)	5, 321
AclWI	GGATC	2 cut(s)	139, 152
AcsI	RAATTY	1 cut(s)	272
AgsI	TTSAA	6 cut(s)	24, 115, 251, 277, 298, 354
AluBI	AGCT	5 cut(s)	103, 220, 262, 336, 404
AluI	AGCT	5 cut(s)	103, 220, 262, 336, 404
Alw21I	GWGCWC	1 cut(s)	222
AlwI	GGATC	2 cut(s)	139, 152
AlwNI	CAGNNNCTG	1 cut(s)	154
AoxI	GGCC	1 cut(s)	340
ApeKI	GCWGC	1 cut(s)	259
ApoI	RAATTY	1 cut(s)	272
AspS9I	GGNCC	1 cut(s)	7
AsuHPI	GGTGA	1 cut(s)	394
AsuII	TTCGAA	1 cut(s)	98
AsuNHI	GCTAGC	1 cut(s)	323
AvaII	GGWCC	1 cut(s)	7
BamHI	GGATCC	1 cut(s)	144
BanII	GRGCYC	1 cut(s)	222
BbsI	GAAGAC	1 cut(s)	242
Bbv12I	GWGCWC	1 cut(s)	222
BbvI	GCAGC	1 cut(s)	271
BfaI	CTAG	1 cut(s)	324
BglII	AGATCT	1 cut(s)	280
BisI	GCNGC	1 cut(s)	260
BlsI	GCNGC	1 cut(s)	261
Bme18I	GGWCC	1 cut(s)	7
BmgT120I	GGNCC	1 cut(s)	7
BmiI	GGNNCC	2 cut(s)	39, 146
BmtI	GCTAGC	1 cut(s)	327
BpiI	GAAGAC	1 cut(s)	242
BplI	GAGNNNNNCTC	2 cut(s)	206, 238
Bpu10I	CCTNAGC	1 cut(s)	337
Bpu14I	TTCGAA	1 cut(s)	98
BpuEI	CTTGAG	1 cut(s)	180
BsaJI	CCNNGG	1 cut(s)	33
BsaXI	ACNNNNNCTCC	1 cut(s)	29
BseDI	CCNNGG	1 cut(s)	33
BseMII	CTCAG	1 cut(s)	120
BseRI	GAGGAG	2 cut(s)	30, 230
BseXI	GCAGC	1 cut(s)	271
BshFI	GGCC	1 cut(s)	342
BsiHKAI	GWGCWC	1 cut(s)	222
BsnI	GGCC	1 cut(s)	342
Bsp119I	TTCGAA	1 cut(s)	98
Bsp1286I	GDGCHC	1 cut(s)	222
Bsp143I	GATC	2 cut(s)	144, 280
BspACI	CCGC	2 cut(s)	5, 321
BspANI	GGCC	1 cut(s)	342
BspCNI	CTCAG	1 cut(s)	121
BspLI	GGNNCC	2 cut(s)	39, 146
BspOI	GCTAGC	1 cut(s)	327
BspPI	GGATC	2 cut(s)	139, 152
BspT104I	TTCGAA	1 cut(s)	98
BssECI	CCNNGG	1 cut(s)	33
BssMI	GATC	2 cut(s)	144, 280
Bst4CI	ACNGT	1 cut(s)	212
Bst6I	CTCTTC	1 cut(s)	384
BstBI	TTCGAA	1 cut(s)	98
BstC8I	GCNNGC	1 cut(s)	325
BstDEI	CTNAG	3 cut(s)	69, 129, 337
BstDSI	CCRYGG	1 cut(s)	33
BstKTI	GATC	2 cut(s)	147, 283
BstMBI	GATC	2 cut(s)	144, 280
BstMWI	GCNNNNNNNGC	3 cut(s)	226, 333, 431
BstV1I	GCAGC	1 cut(s)	271
BstV2I	GAAGAC	1 cut(s)	242
BstX2I	RGATCY	2 cut(s)	144, 280
BstYI	RGATCY	2 cut(s)	144, 280
BsuRI	GGCC	1 cut(s)	342
BtgI	CCRYGG	1 cut(s)	33
Cac8I	GCNNGC	1 cut(s)	325
CaiI	CAGNNNCTG	1 cut(s)	154
Cfr13I	GGNCC	1 cut(s)	7
DdeI	CTNAG	3 cut(s)	69, 129, 337
DpnI	GATC	2 cut(s)	146, 282
DpnII	GATC	2 cut(s)	144, 280
Eam1104I	CTCTTC	1 cut(s)	384
EarI	CTCTTC	1 cut(s)	384
EciI	GGCGGA	1 cut(s)	20
Ecl136II	GAGCTC	1 cut(s)	220
Eco147I	AGGCCT	1 cut(s)	342
Eco24I	GRGCYC	1 cut(s)	222
Eco47I	GGWCC	1 cut(s)	7
Eco53kI	GAGCTC	1 cut(s)	220
EcoICRI	GAGCTC	1 cut(s)	220
EcoRI	GAATTC	1 cut(s)	272
EcoT38I	GRGCYC	1 cut(s)	222
FblI	GTMKAC	1 cut(s)	207
Fnu4HI	GCNGC	1 cut(s)	260
FriOI	GRGCYC	1 cut(s)	222
Fsp4HI	GCNGC	1 cut(s)	260
FspBI	CTAG	1 cut(s)	324
GluI	GCNGC	1 cut(s)	260
HaeIII	GGCC	1 cut(s)	342
HindIII	AAGCTT	1 cut(s)	334
HinfI	GANTC	8 cut(s)	20, 95, 119, 151, 238, 244, 298, 350
HphI	GGTGA	1 cut(s)	394
Hpy166II	GTNNAC	1 cut(s)	208
Hpy188I	TCNGA	4 cut(s)	19, 156, 243, 285
Hpy188III	TCNNGA	3 cut(s)	148, 248, 266
Hpy8I	GTNNAC	1 cut(s)	208
HpyCH4III	ACNGT	1 cut(s)	212
HpyCH4V	TGCA	1 cut(s)	169
HpyF10VI	GCNNNNNNNGC	3 cut(s)	226, 333, 431
HpyF3I	CTNAG	3 cut(s)	69, 129, 337
Kzo9I	GATC	2 cut(s)	144, 280
LmnI	GCTCC	2 cut(s)	43, 217
LpnPI	CCDG	6 cut(s)	102, 127, 146, 161, 210, 341
Lsp1109I	GCAGC	1 cut(s)	271
MaeI	CTAG	1 cut(s)	324
MaeIII	GTNAC	2 cut(s)	132, 382
MalI	GATC	2 cut(s)	146, 282
MboI	GATC	2 cut(s)	144, 280
MboII	GAAGA	3 cut(s)	45, 247, 401
MflI	RGATCY	2 cut(s)	144, 280
MhlI	GDGCHC	1 cut(s)	222
MluCI	AATT	4 cut(s)	110, 185, 272, 363
MlyI	GAGTC	1 cut(s)	232
MmeI	TCCRAC	1 cut(s)	155
MnlI	CCTC	6 cut(s)	25, 51, 173, 208, 262, 373
MseI	TTAA	1 cut(s)	201
MwoI	GCNNNNNNNGC	3 cut(s)	226, 333, 431
NdeII	GATC	2 cut(s)	144, 280
NheI	GCTAGC	1 cut(s)	323
NlaIV	GGNNCC	2 cut(s)	39, 146
NmuCI	GTSAC	1 cut(s)	382
NspV	TTCGAA	1 cut(s)	98
PceI	AGGCCT	1 cut(s)	342
PfeI	GAWTC	7 cut(s)	20, 95, 119, 151, 244, 298, 350
PkrI	GCNGC	1 cut(s)	261
PleI	GAGTC	1 cut(s)	232
PpsI	GAGTC	1 cut(s)	232
Psp124BI	GAGCTC	1 cut(s)	222
PspN4I	GGNNCC	2 cut(s)	39, 146
PspPI	GGNCC	1 cut(s)	7
PstNI	CAGNNNCTG	1 cut(s)	154
PsuI	RGATCY	2 cut(s)	144, 280
SacI	GAGCTC	1 cut(s)	222
SaqAI	TTAA	1 cut(s)	201
SatI	GCNGC	1 cut(s)	260
Sau3AI	GATC	2 cut(s)	144, 280
Sau96I	GGNCC	1 cut(s)	7
SchI	GAGTC	1 cut(s)	232
SduI	GDGCHC	1 cut(s)	222
SetI	ASST	9 cut(s)	17, 105, 184, 222, 264, 296, 338, 384, 406
SfuI	TTCGAA	1 cut(s)	98
SinI	GGWCC	1 cut(s)	7
SmlI	CTYRAG	1 cut(s)	195
SmoI	CTYRAG	1 cut(s)	195
Sse9I	AATT	4 cut(s)	110, 185, 272, 363
SseBI	AGGCCT	1 cut(s)	342
SsiI	CCGC	2 cut(s)	5, 321
SspMI	CTAG	1 cut(s)	324
SstI	GAGCTC	1 cut(s)	222
StuI	AGGCCT	1 cut(s)	342
TaaI	ACNGT	1 cut(s)	212
TaqI	TCGA	2 cut(s)	98, 410
TasI	AATT	4 cut(s)	110, 185, 272, 363
TfiI	GAWTC	7 cut(s)	20, 95, 119, 151, 244, 298, 350
Tru1I	TTAA	1 cut(s)	201
Tru9I	TTAA	1 cut(s)	201
TseFI	GTSAC	1 cut(s)	382
TseI	GCWGC	1 cut(s)	259
Tsp45I	GTSAC	1 cut(s)	382
TspDTI	ATGAA	1 cut(s)	132
TspGWI	ACGGA	2 cut(s)	37, 122
VpaK11BI	GGWCC	1 cut(s)	7
XapI	RAATTY	1 cut(s)	272
XmiI	GTMKAC	1 cut(s)	207
XspI	CTAG	1 cut(s)	324

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.