RLG00000007635

Heavy-metal-associated domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr2
OG0002436
Physical Location & Seq
Reverse (-)
19255874 .. 19260183
4310 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000007635

Sequence Viewer

Length: 1122 bp
ATGGCCAACTCCGATTCCGCCGCTTCTCTTCCTCCATCGGCTCCTCTCTCCGTCGCTCCTCCGCTCTCATCCACAACAAAGGAGAATCTGACTCCAGTTTCCTGCAAGATTGAGGAACTGACTGAATCCAGGTCTGAGCTGTTTGGCAGAATTCAAGGGTTGAAGAAGGATTTACAAACATGGAGGTCAAAGCTAGACTCGCAAGTTAAGGTCTACCGCGATGTCTTTCTAATGGCTTCTGTACTGTCTGCTCAAGAAGCCTCACAGCTACTCAAATGTCAGACATGGATCTTGAAAGTGTTTATCCACTGTGAAGGTTGCAAGAGGAAAGTGAAGAAAGTTCTGCTGGGAATTGATGGTGTTTACACCACATCTATTGAGGCAGAGCAAAACAGAGTCACAGTCACTGGAGACATTGACGTTCAGACCCTCATCAAGAAGCTGATTGTAAAAACTGGTAAACATGCCGAGCTATGGCCAGAAAATCTCACCATGAAAGAAAAGACCAAGCCTGTGAAAGCCGAGAACAACGACAAACAGAAATCCTCAGAAATTTGCCAGAGTCAGCAGAGTACTACACGTGACAAAGTTGGAGTGGTCAGGCTAAACAGAGCAAGTGAGGGTGACACAGCTAAGTTTAACAGAGAGGAACAATGTCAAGTATCAAAGAAGGGTCACATTCCGCTGGAGAAATCTCCTGATGGCCATGATTCTCAGGCCATGGATCTTCAGCTCGGTGAAAGTGAAAAAGGGAGTGTTATTGGCAAAAAGAACAGGAAAGGCCAAAGACATGATTTGGGTTCAACAAGCTCCTGTGGACCTGCCAGCATAGGATCTCAACATTACGGTGATCACACTGCCGGTCCAGTTGGTCTCAGCCATATCATCGCAAACATGTATCCGATGGATTACCACTCTCATCTGGTGTTCAATGGAAGTGACATTACAGCAGCTGCTACAGCACTGCCTAGCAAGAGCTTGGCTCCTTACTATTGTTATGGTCCATCATCACAGTACAAGGATGCAGCTAGTGGTGAACAGATTGATCAAGTGAAAGCAACATTTCTTAAAAGTGTGCAGGTTTTCAGTGATGAAAATGCTAATGGCTGTTTTATTATGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
HMA

Protein Analysis

374

Amino Acids

40.78

Weight (kDa)

8.57

Isoelectric Point (pI)

41.34

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
HMA PF00403 99 - 153 1.1e-12 Heavy-metal-associated domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 2 cut(s) 829, 1069
AccBSI CCGCTC 1 cut(s) 64
AccI GTMKAC 1 cut(s) 213
AccII CGCG 1 cut(s) 219
AciI CCGC 5 cut(s) 18, 21, 62, 217, 683
AclWI GGATC 3 cut(s) 296, 732, 841
AcoI YGGCCR 3 cut(s) 3, 476, 703
AcsI RAATTY 2 cut(s) 150, 552
AcuI CTGAAG 1 cut(s) 713
AcvI CACGTG 1 cut(s) 581
AfaI GTAC 3 cut(s) 243, 574, 1016
AfiI CCNNNNNNNGG 1 cut(s) 474
AflIII ACRYGT 2 cut(s) 578, 894
AgsI TTSAA 5 cut(s) 155, 163, 295, 804, 931
AjnI CCWGG 1 cut(s) 128
Alw26I GTCTC 2 cut(s) 405, 878
AlwI GGATC 3 cut(s) 296, 732, 841
AlwNI CAGNNNCTG 2 cut(s) 407, 953
AoxI GGCC 5 cut(s) 3, 476, 703, 717, 781
ApeKI GCWGC 3 cut(s) 950, 953, 1025
ApoI RAATTY 2 cut(s) 150, 552
AspS9I GGNCC 3 cut(s) 818, 863, 1001
AsuHPI GGTGA 5 cut(s) 481, 635, 749, 860, 1046
AvaII GGWCC 3 cut(s) 818, 863, 1001
BalI TGGCCA 3 cut(s) 5, 478, 705
BarI GAAGNNNNNNTAC 2 cut(s) 928, 960
BbrPI CACGTG 1 cut(s) 581
BbvI GCAGC 3 cut(s) 940, 962, 1037
BccI CCATC 5 cut(s) 43, 350, 695, 898, 1012
BciT130I CCWGG 1 cut(s) 130
BciVI GTATCC 1 cut(s) 909
BclI TGATCA 2 cut(s) 850, 1045
BcoDI GTCTC 2 cut(s) 405, 878
BfaI CTAG 3 cut(s) 194, 969, 1029
BfmI CTRYAG 1 cut(s) 957
BfuAI ACCTGC 2 cut(s) 829, 1069
BfuI GTATCC 1 cut(s) 909
BisI GCNGC 4 cut(s) 21, 951, 954, 1026
BlsI GCNGC 4 cut(s) 22, 952, 955, 1027
BmcAI AGTACT 1 cut(s) 574
Bme1390I CCNGG 1 cut(s) 130
Bme18I GGWCC 3 cut(s) 818, 863, 1001
BmgT120I GGNCC 3 cut(s) 818, 863, 1001
BmiI GGNNCC 2 cut(s) 42, 984
BmrFI CCNGG 1 cut(s) 130
BmsI GCATC 1 cut(s) 1012
BplI GAGNNNNNCTC 2 cut(s) 967, 999
BpmI CTGGAG 3 cut(s) 78, 429, 707
BpuEI CTTGAG 1 cut(s) 237
BsaAI YACGTR 1 cut(s) 581
BsaI GGTCTC 1 cut(s) 878
BsaJI CCNNGG 1 cut(s) 720
Bsc4I CCNNNNNNNGG 1 cut(s) 474
Bse118I RCCGGY 1 cut(s) 860
Bse1I ACTGG 4 cut(s) 95, 412, 460, 866
BseBI CCWGG 1 cut(s) 130
BseDI CCNNGG 1 cut(s) 720
BseGI GGATG 2 cut(s) 68, 1027
BseLI CCNNNNNNNGG 1 cut(s) 474
BseMII CTCAG 4 cut(s) 126, 561, 728, 889
BseNI ACTGG 4 cut(s) 95, 412, 460, 866
BseRI GAGGAG 2 cut(s) 33, 48
BseXI GCAGC 3 cut(s) 940, 962, 1037
BseYI CCCAGC 1 cut(s) 346
BsgI GTGCAG 1 cut(s) 1097
Bsh1236I CGCG 1 cut(s) 219
BshFI GGCC 5 cut(s) 5, 478, 705, 719, 783
BsiSI CCGG 1 cut(s) 861
BslI CCNNNNNNNGG 1 cut(s) 474
BsmAI GTCTC 2 cut(s) 405, 878
BsnI GGCC 5 cut(s) 5, 478, 705, 719, 783
Bso31I GGTCTC 1 cut(s) 878
Bsp143I GATC 5 cut(s) 288, 724, 833, 850, 1045
Bsp19I CCATGG 1 cut(s) 720
BspACI CCGC 5 cut(s) 18, 21, 62, 217, 683
BspANI GGCC 5 cut(s) 5, 478, 705, 719, 783
BspCNI CTCAG 4 cut(s) 127, 560, 727, 888
BspFNI CGCG 1 cut(s) 219
BspLI GGNNCC 2 cut(s) 42, 984
BspMI ACCTGC 2 cut(s) 829, 1069
BspPI GGATC 3 cut(s) 296, 732, 841
BspTNI GGTCTC 1 cut(s) 878
BsrBI CCGCTC 1 cut(s) 64
BsrFI RCCGGY 1 cut(s) 860
BsrI ACTGG 4 cut(s) 95, 412, 460, 866
BssAI RCCGGY 1 cut(s) 860
BssECI CCNNGG 1 cut(s) 720
BssMI GATC 5 cut(s) 288, 724, 833, 850, 1045
BssT1I CCWWGG 1 cut(s) 720
Bst2UI CCWGG 1 cut(s) 130
Bst4CI ACNGT 5 cut(s) 246, 311, 403, 848, 1014
Bst6I CTCTTC 1 cut(s) 33
BstBAI YACGTR 1 cut(s) 581
BstC8I GCNNGC 1 cut(s) 826
BstDEI CTNAG 5 cut(s) 135, 547, 633, 714, 875
BstDSI CCRYGG 1 cut(s) 720
BstF5I GGATG 2 cut(s) 68, 1027
BstFNI CGCG 1 cut(s) 219
BstKTI GATC 5 cut(s) 291, 727, 836, 853, 1048
BstMAI GTCTC 2 cut(s) 405, 878
BstMBI GATC 5 cut(s) 288, 724, 833, 850, 1045
BstMWI GCNNNNNNNGC 3 cut(s) 199, 257, 959
BstNI CCWGG 1 cut(s) 130
BstNSI RCATGY 2 cut(s) 467, 898
BstSCI CCNGG 1 cut(s) 128
BstSFI CTRYAG 1 cut(s) 957
BstUI CGCG 1 cut(s) 219
BstV1I GCAGC 3 cut(s) 940, 962, 1037
BstX2I RGATCY 3 cut(s) 288, 724, 833
BstYI RGATCY 3 cut(s) 288, 724, 833
BsuI GTATCC 1 cut(s) 909
BsuRI GGCC 5 cut(s) 5, 478, 705, 719, 783
BtgI CCRYGG 1 cut(s) 720
BtgZI GCGATG 2 cut(s) 234, 871
BtsCI GGATG 2 cut(s) 68, 1027
BtsI GCAGTG 2 cut(s) 855, 962
BtsIMutI CAGTG 5 cut(s) 307, 405, 855, 962, 1093
BveI ACCTGC 2 cut(s) 829, 1069
Cac8I GCNNGC 1 cut(s) 826
CaiI CAGNNNCTG 2 cut(s) 407, 953
Cfr10I RCCGGY 1 cut(s) 860
Cfr13I GGNCC 3 cut(s) 818, 863, 1001
Csp6I GTAC 3 cut(s) 242, 573, 1015
CspCI CAANNNNNGTGG 2 cut(s) 358, 393
CviAII CATG 8 cut(s) 180, 285, 464, 493, 707, 721, 791, 895
CviQI GTAC 3 cut(s) 242, 573, 1015
DdeI CTNAG 5 cut(s) 135, 547, 633, 714, 875
DpnI GATC 5 cut(s) 290, 726, 835, 852, 1047
DpnII GATC 5 cut(s) 288, 724, 833, 850, 1045
EaeI YGGCCR 3 cut(s) 3, 476, 703
Eam1104I CTCTTC 1 cut(s) 33
EarI CTCTTC 1 cut(s) 33
EciI GGCGGA 1 cut(s) 7
Eco130I CCWWGG 1 cut(s) 720
Eco31I GGTCTC 1 cut(s) 878
Eco47I GGWCC 3 cut(s) 818, 863, 1001
Eco57I CTGAAG 1 cut(s) 713
Eco72I CACGTG 1 cut(s) 581
EcoRI GAATTC 1 cut(s) 150
EcoRII CCWGG 1 cut(s) 128
EcoT14I CCWWGG 1 cut(s) 720
ErhI CCWWGG 1 cut(s) 720
FaeI CATG 8 cut(s) 183, 288, 467, 496, 710, 724, 794, 898
FatI CATG 8 cut(s) 179, 284, 463, 492, 706, 720, 790, 894
FbaI TGATCA 2 cut(s) 850, 1045
FblI GTMKAC 1 cut(s) 213
Fnu4HI GCNGC 4 cut(s) 21, 951, 954, 1026
FokI GGATG 2 cut(s) 55, 1034
Fsp4HI GCNGC 4 cut(s) 21, 951, 954, 1026
FspBI CTAG 3 cut(s) 194, 969, 1029
GluI GCNGC 4 cut(s) 21, 951, 954, 1026
GsaI CCCAGC 1 cut(s) 350
GsuI CTGGAG 3 cut(s) 78, 429, 707
HaeIII GGCC 5 cut(s) 5, 478, 705, 719, 783
HapII CCGG 1 cut(s) 861
Hin1II CATG 8 cut(s) 183, 288, 467, 496, 710, 724, 794, 898
HinfI GANTC 8 cut(s) 14, 85, 91, 125, 197, 396, 562, 710
HpaII CCGG 1 cut(s) 861
HphI GGTGA 5 cut(s) 481, 635, 749, 860, 1046
Hpy166II GTNNAC 5 cut(s) 214, 364, 461, 818, 1037
Hpy188I TCNGA 7 cut(s) 13, 90, 136, 282, 426, 550, 903
Hpy188III TCNNGA 4 cut(s) 254, 292, 436, 698
Hpy8I GTNNAC 5 cut(s) 214, 364, 461, 818, 1037
Hpy99I CGWCG 1 cut(s) 56
HpyAV CCTTC 3 cut(s) 160, 308, 664
HpyCH4III ACNGT 5 cut(s) 246, 311, 403, 848, 1014
HpyCH4IV ACGT 2 cut(s) 420, 580
HpyCH4V TGCA 4 cut(s) 105, 321, 1025, 1078
HpyF10VI GCNNNNNNNGC 3 cut(s) 199, 257, 959
HpyF3I CTNAG 5 cut(s) 135, 547, 633, 714, 875
HpySE526I ACGT 2 cut(s) 420, 580
Hsp92II CATG 8 cut(s) 183, 288, 467, 496, 710, 724, 794, 898
Ksp22I TGATCA 2 cut(s) 850, 1045
Kzo9I GATC 5 cut(s) 288, 724, 833, 850, 1045
LmnI GCTCC 4 cut(s) 46, 61, 815, 988
Lsp1109I GCAGC 3 cut(s) 940, 962, 1037
LweI GCATC 1 cut(s) 1012
MaeI CTAG 3 cut(s) 194, 969, 1029
MaeII ACGT 2 cut(s) 420, 580
MaeIII GTNAC 6 cut(s) 397, 403, 581, 623, 674, 938
MalI GATC 5 cut(s) 290, 726, 835, 852, 1047
MbiI CCGCTC 1 cut(s) 64
MboI GATC 5 cut(s) 288, 724, 833, 850, 1045
MboII GAAGA 4 cut(s) 20, 175, 346, 719
MflI RGATCY 3 cut(s) 288, 724, 833
MlsI TGGCCA 3 cut(s) 5, 478, 705
MluCI AATT 3 cut(s) 150, 351, 552
MluNI TGGCCA 3 cut(s) 5, 478, 705
MlyI GAGTC 4 cut(s) 85, 191, 405, 571
MmeI TCCRAC 1 cut(s) 571
Mox20I TGGCCA 3 cut(s) 5, 478, 705
MscI TGGCCA 3 cut(s) 5, 478, 705
MseI TTAA 3 cut(s) 207, 639, 1068
MslI CAYNNNNRTG 1 cut(s) 846
Msp20I TGGCCA 3 cut(s) 5, 478, 705
MspA1I CMGCKG 2 cut(s) 685, 953
MspI CCGG 1 cut(s) 861
MspR9I CCNGG 1 cut(s) 130
MvaI CCWGG 1 cut(s) 130
MvnI CGCG 1 cut(s) 219
MwoI GCNNNNNNNGC 3 cut(s) 199, 257, 959
NcoI CCATGG 1 cut(s) 720
NdeII GATC 5 cut(s) 288, 724, 833, 850, 1045
NlaIII CATG 8 cut(s) 183, 288, 467, 496, 710, 724, 794, 898
NlaIV GGNNCC 2 cut(s) 42, 984
NmeAIII GCCGAG 2 cut(s) 493, 547
NmuCI GTSAC 6 cut(s) 397, 403, 581, 623, 674, 938
NspI RCATGY 2 cut(s) 467, 898
PciI ACATGT 1 cut(s) 894
PfeI GAWTC 4 cut(s) 14, 85, 125, 710
PkrI GCNGC 4 cut(s) 22, 952, 955, 1027
PleI GAGTC 4 cut(s) 85, 191, 404, 570
PmaCI CACGTG 1 cut(s) 581
PmlI CACGTG 1 cut(s) 581
PpsI GAGTC 4 cut(s) 85, 191, 404, 570
Ppu21I YACGTR 1 cut(s) 581
PscI ACATGT 1 cut(s) 894
Psp6I CCWGG 1 cut(s) 128
PspCI CACGTG 1 cut(s) 581
PspFI CCCAGC 1 cut(s) 346
PspGI CCWGG 1 cut(s) 128
PspN4I GGNNCC 2 cut(s) 42, 984
PspPI GGNCC 3 cut(s) 818, 863, 1001
PstNI CAGNNNCTG 2 cut(s) 407, 953
PsuI RGATCY 3 cut(s) 288, 724, 833
PvuII CAGCTG 1 cut(s) 953
RsaI GTAC 3 cut(s) 243, 574, 1016
RsaNI GTAC 3 cut(s) 242, 573, 1015
RseI CAYNNNNRTG 1 cut(s) 846
SaqAI TTAA 3 cut(s) 207, 639, 1068
SatI GCNGC 4 cut(s) 21, 951, 954, 1026
Sau3AI GATC 5 cut(s) 288, 724, 833, 850, 1045
Sau96I GGNCC 3 cut(s) 818, 863, 1001
ScaI AGTACT 1 cut(s) 574
SchI GAGTC 4 cut(s) 85, 191, 405, 571
ScrFI CCNGG 1 cut(s) 130
SfaNI GCATC 1 cut(s) 1012
SfcI CTRYAG 1 cut(s) 957
SinI GGWCC 3 cut(s) 818, 863, 1001
SmiMI CAYNNNNRTG 1 cut(s) 846
SmlI CTYRAG 1 cut(s) 252
SmoI CTYRAG 1 cut(s) 252
Sse9I AATT 3 cut(s) 150, 351, 552
SsiI CCGC 5 cut(s) 18, 21, 62, 217, 683
SspMI CTAG 3 cut(s) 194, 969, 1029
StyD4I CCNGG 1 cut(s) 128
StyI CCWWGG 1 cut(s) 720
TaaI ACNGT 5 cut(s) 246, 311, 403, 848, 1014
TaiI ACGT 2 cut(s) 423, 583
TasI AATT 3 cut(s) 150, 351, 552
TatI WGTACW 3 cut(s) 241, 572, 1014
TauI GCSGC 1 cut(s) 23
TfiI GAWTC 4 cut(s) 14, 85, 125, 710
Tru1I TTAA 3 cut(s) 207, 639, 1068
Tru9I TTAA 3 cut(s) 207, 639, 1068
TscAI CASTG 5 cut(s) 314, 412, 862, 969, 1093
TseFI GTSAC 6 cut(s) 397, 403, 581, 623, 674, 938
TseI GCWGC 3 cut(s) 950, 953, 1025
Tsp45I GTSAC 6 cut(s) 397, 403, 581, 623, 674, 938
TspDTI ATGAA 2 cut(s) 509, 1107
TspGWI ACGGA 1 cut(s) 40
TspRI CASTG 5 cut(s) 314, 412, 862, 969, 1093
VpaK11BI GGWCC 3 cut(s) 818, 863, 1001
XapI RAATTY 2 cut(s) 150, 552
XceI RCATGY 2 cut(s) 467, 898
XmiI GTMKAC 1 cut(s) 213
XspI CTAG 3 cut(s) 194, 969, 1029
ZrmI AGTACT 1 cut(s) 574
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.