Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr13

Orthogroup ID

OG0002436

Physical Location & Seq

Genomic Coordinates Reverse (-)

13695368 .. 13697348

Gene Structure 1981 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD13G1169300.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 429 bp

ATGGCCGCCGCCAACTCTTCTGATTCCTCGATTCCCTCCACTCCTCCTCCACTCTCCTCCAGCAAGGAGAATGTGACCCCGATTGGCTCCAAGCTTGCGGAATTGAATGAATCGAGGTCTGAGCTACTTGGTAGAATTCAAGGGTTGAAGCAGGATTTGCAAAGTTGGAGGTCGAACTTAGACACTCAAGTGAAAGTCTACCACGATGAGCTTTCAGAACTCAAGAAATCCCTCAACACTGAAGTGGATCAACTTCGATCTGAATTTCAAGATCTGAGGACCACTCTTCAGCAGCAGCAAGAGGATGTTACGACTAGTCTTAGAAACTTGGGGCTGCAGGATGTTTCAGGAGAGAAAAAAGAAGCCCAAGATACCGAAGAACCAAATGTTTCAACCAAGGTGGATGAGGCCAAAGAAGGTGAAAGCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

143

Amino Acids

15.71

Weight (kDa)

4.59

Isoelectric Point (pI)

63.02

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002436)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G15790 AT4G15790
fragaria_vesca	FvH4_4g17930 FvH4_4g17930 FvH4_4g17940 FvH4_4g17940 FvH4_4g17940
malus_domestica	MD13G1169200.v1.1 MD13G1169300.v1.1 MD16G1170500.v1.1
prunus_persica	Prupe.1G137600_v2.0.a1 Prupe.1G137600_v2.0.a1 Prupe.1G137600_v2.0.a1 Prupe.1G137900_v2.0.a1
pyrus_communis	pycom13g14490 pycom16g14290
rosa_chinensis	RchiOBHm_Chr4g0422101 RchiOBHm_Chr4g0422111
rosa_laevigata	RLG00000007635
rosa_multiflora	Rmu_sc0009286.1_g000003 Rmu_sc0009286.1_g000004
rosa_roxburghii	Rroxscaffold_3G00224970 Rroxscaffold_4G00330840 Rroxscaffold_5G00364180 Rroxscaffold_5G00364190 Rroxscaffold_6G00405940
rosa_rugosa	Rorug04G0177200 Rorug04G0177300 Rorug04G0177400 Rorug04G0177500
rosa_samantha	Rh4AG236800 Rh4AG236900 Rh4BG239600 Rh4BG239700 Rh4CG251500 Rh4CG251600 Rh4DG235700 Rh4DG235800 Rh6BG107100
rosa_wichuraiana	Rw4G020480 Rw4G020490

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	198
AciI	CCGC	3 cut(s)	6, 9, 98
AclWI	GGATC	1 cut(s)	255
AcoI	YGGCCR	1 cut(s)	3
AcsI	RAATTY	2 cut(s)	135, 263
AcuI	CTGAAG	2 cut(s)	261, 272
AgsI	TTSAA	5 cut(s)	106, 140, 148, 269, 393
AhlI	ACTAGT	1 cut(s)	314
AleI	CACNNNNGTG	2 cut(s)	188, 242
AluBI	AGCT	4 cut(s)	94, 124, 211, 426
AluI	AGCT	4 cut(s)	94, 124, 211, 426
AlwI	GGATC	1 cut(s)	255
AoxI	GGCC	2 cut(s)	3, 408
ApeKI	GCWGC	3 cut(s)	292, 295, 334
ApoI	RAATTY	2 cut(s)	135, 263
AspS9I	GGNCC	1 cut(s)	279
AvaII	GGWCC	1 cut(s)	279
BbvI	GCAGC	3 cut(s)	304, 307, 321
BcuI	ACTAGT	1 cut(s)	314
BfaI	CTAG	2 cut(s)	315, 427
BfmI	CTRYAG	1 cut(s)	335
BglII	AGATCT	1 cut(s)	271
BisI	GCNGC	5 cut(s)	6, 9, 293, 296, 335
BlsI	GCNGC	5 cut(s)	7, 10, 294, 297, 336
Bme18I	GGWCC	1 cut(s)	279
BmgT120I	GGNCC	1 cut(s)	279
BmiI	GGNNCC	1 cut(s)	88
BplI	GAGNNNNNCTC	2 cut(s)	268, 300
BpmI	CTGGAG	1 cut(s)	43
BpuEI	CTTGAG	2 cut(s)	171, 206
BsaJI	CCNNGG	1 cut(s)	396
BsaXI	ACNNNNNCTCC	2 cut(s)	31, 61
BseDI	CCNNGG	1 cut(s)	396
BseGI	GGATG	3 cut(s)	310, 346, 409
BseMII	CTCAG	2 cut(s)	111, 266
BseRI	GAGGAG	3 cut(s)	33, 36, 46
BseXI	GCAGC	3 cut(s)	304, 307, 321
BshFI	GGCC	2 cut(s)	5, 410
BsnI	GGCC	2 cut(s)	5, 410
Bsp143I	GATC	3 cut(s)	247, 257, 271
BspACI	CCGC	3 cut(s)	6, 9, 98
BspANI	GGCC	2 cut(s)	5, 410
BspCNI	CTCAG	2 cut(s)	112, 267
BspLI	GGNNCC	1 cut(s)	88
BspMAI	CTGCAG	1 cut(s)	339
BspPI	GGATC	1 cut(s)	255
BssECI	CCNNGG	1 cut(s)	396
BssMI	GATC	3 cut(s)	247, 257, 271
BssT1I	CCWWGG	1 cut(s)	396
Bst6I	CTCTTC	2 cut(s)	22, 291
BstAPI	GCANNNNNTGC	1 cut(s)	157
BstC8I	GCNNGC	1 cut(s)	96
BstDEI	CTNAG	4 cut(s)	120, 178, 275, 320
BstF5I	GGATG	3 cut(s)	310, 346, 409
BstKTI	GATC	3 cut(s)	250, 260, 274
BstMBI	GATC	3 cut(s)	247, 257, 271
BstMWI	GCNNNNNNNGC	1 cut(s)	157
BstSFI	CTRYAG	1 cut(s)	335
BstV1I	GCAGC	3 cut(s)	304, 307, 321
BstX2I	RGATCY	1 cut(s)	271
BstYI	RGATCY	1 cut(s)	271
BsuRI	GGCC	2 cut(s)	5, 410
BtsCI	GGATG	3 cut(s)	310, 346, 409
BtsIMutI	CAGTG	1 cut(s)	237
Cac8I	GCNNGC	1 cut(s)	96
Cfr13I	GGNCC	1 cut(s)	279
CspCI	CAANNNNNGTGG	2 cut(s)	381, 416
CviJI	RGCY	9 cut(s)	5, 87, 94, 124, 211, 334, 365, 410, 426
CviKI_1	RGCY	9 cut(s)	5, 87, 94, 124, 211, 334, 365, 410, 426
DdeI	CTNAG	4 cut(s)	120, 178, 275, 320
DpnI	GATC	3 cut(s)	249, 259, 273
DpnII	GATC	3 cut(s)	247, 257, 271
EaeI	YGGCCR	1 cut(s)	3
Eam1104I	CTCTTC	2 cut(s)	22, 291
EarI	CTCTTC	2 cut(s)	22, 291
Eco130I	CCWWGG	1 cut(s)	396
Eco47I	GGWCC	1 cut(s)	279
Eco57I	CTGAAG	2 cut(s)	261, 272
EcoRI	GAATTC	1 cut(s)	135
EcoT14I	CCWWGG	1 cut(s)	396
ErhI	CCWWGG	1 cut(s)	396
FblI	GTMKAC	1 cut(s)	198
Fnu4HI	GCNGC	5 cut(s)	6, 9, 293, 296, 335
FokI	GGATG	3 cut(s)	317, 353, 416
Fsp4HI	GCNGC	5 cut(s)	6, 9, 293, 296, 335
FspBI	CTAG	2 cut(s)	315, 427
GluI	GCNGC	5 cut(s)	6, 9, 293, 296, 335
GsuI	CTGGAG	1 cut(s)	43
HaeIII	GGCC	2 cut(s)	5, 410
HindIII	AAGCTT	1 cut(s)	92
HinfI	GANTC	3 cut(s)	23, 31, 110
Hpy166II	GTNNAC	1 cut(s)	199
Hpy188I	TCNGA	5 cut(s)	22, 121, 217, 262, 276
Hpy188III	TCNNGA	3 cut(s)	223, 269, 348
Hpy8I	GTNNAC	1 cut(s)	199
HpyAV	CCTTC	1 cut(s)	410
HpyCH4V	TGCA	2 cut(s)	160, 337
HpyF10VI	GCNNNNNNNGC	1 cut(s)	157
HpyF3I	CTNAG	4 cut(s)	120, 178, 275, 320
Kzo9I	GATC	3 cut(s)	247, 257, 271
LmnI	GCTCC	1 cut(s)	92
LpnPI	CCDG	4 cut(s)	73, 137, 323, 333
Lsp1109I	GCAGC	3 cut(s)	304, 307, 321
MaeI	CTAG	2 cut(s)	315, 427
MaeIII	GTNAC	2 cut(s)	73, 307
MalI	GATC	3 cut(s)	249, 259, 273
MboI	GATC	3 cut(s)	247, 257, 271
MboII	GAAGA	3 cut(s)	9, 278, 389
MflI	RGATCY	1 cut(s)	271
MluCI	AATT	3 cut(s)	101, 135, 263
MmeI	TCCRAC	1 cut(s)	146
MslI	CAYNNNNRTG	2 cut(s)	188, 242
MwoI	GCNNNNNNNGC	1 cut(s)	157
NdeII	GATC	3 cut(s)	247, 257, 271
NlaIV	GGNNCC	1 cut(s)	88
NmuCI	GTSAC	1 cut(s)	73
OliI	CACNNNNGTG	2 cut(s)	188, 242
PfeI	GAWTC	3 cut(s)	23, 31, 110
PkrI	GCNGC	5 cut(s)	7, 10, 294, 297, 336
PspN4I	GGNNCC	1 cut(s)	88
PspPI	GGNCC	1 cut(s)	279
PstI	CTGCAG	1 cut(s)	339
PsuI	RGATCY	1 cut(s)	271
RseI	CAYNNNNRTG	2 cut(s)	188, 242
SatI	GCNGC	5 cut(s)	6, 9, 293, 296, 335
Sau3AI	GATC	3 cut(s)	247, 257, 271
Sau96I	GGNCC	1 cut(s)	279
SetI	ASST	8 cut(s)	96, 119, 126, 173, 213, 402, 421, 428
SfcI	CTRYAG	1 cut(s)	335
SinI	GGWCC	1 cut(s)	279
SmiMI	CAYNNNNRTG	2 cut(s)	188, 242
SmlI	CTYRAG	2 cut(s)	186, 221
SmoI	CTYRAG	2 cut(s)	186, 221
SpeI	ACTAGT	1 cut(s)	314
Sse9I	AATT	3 cut(s)	101, 135, 263
SsiI	CCGC	3 cut(s)	6, 9, 98
SspMI	CTAG	2 cut(s)	315, 427
StyI	CCWWGG	1 cut(s)	396
TaqI	TCGA	4 cut(s)	29, 113, 173, 256
TasI	AATT	3 cut(s)	101, 135, 263
TauI	GCSGC	2 cut(s)	8, 11
TfiI	GAWTC	3 cut(s)	23, 31, 110
TscAI	CASTG	1 cut(s)	244
TseFI	GTSAC	1 cut(s)	73
TseI	GCWGC	3 cut(s)	292, 295, 334
Tsp45I	GTSAC	1 cut(s)	73
TspDTI	ATGAA	1 cut(s)	123
TspRI	CASTG	1 cut(s)	244
VpaK11BI	GGWCC	1 cut(s)	279
XapI	RAATTY	2 cut(s)	135, 263
XmiI	GTMKAC	1 cut(s)	198
XspI	CTAG	2 cut(s)	315, 427

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.