Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr16

Orthogroup ID

OG0002436

Physical Location & Seq

Genomic Coordinates Reverse (-)

10327751 .. 10329455

Gene Structure 1705 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom16g14290.6

Sequence Viewer

CDS Protein Promoter (2k)

Length: 444 bp

ATGGCCGCCGCCAACTCTTCTGATCCCTCGATTCCCTCCACTCCTCTCCCTGCCCCTGCTCCTCCACTCTCCTCCAGTAAGGAGAATGCGACTCCGATTGGCTCCAAGCTTGCGGAATTGAATGAATCGAGGTCTGAGCTACTTGTTAGAATTCAAGGGTTGAAGCAGGATTTGCAAAGTTGGAGGTTAAAGTTAGACACTCAAGTGAAAGTCTATCGCGACGAGCTTTCAGAACTCAAGAAATCCCTCAACACTGAAGTGGATCAACTTCGATCTGAATTTCAAGAACTGAGGACCACTCTTCAGCAGCAGCAAGAGTATGTTACAACTAGTCTTAGAAACTTGGGGCTGCAGGATGTCTCAGGAGAGAAAAAAGAAGCCCAAGATACCGAAGAATCAAATGTTTCAACCGAGGTGGATGAAGCCAAAGAAGCTGAAAGCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

148

Amino Acids

16.31

Weight (kDa)

4.62

Isoelectric Point (pI)

60.68

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002436)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G15790 AT4G15790
fragaria_vesca	FvH4_4g17930 FvH4_4g17930 FvH4_4g17940 FvH4_4g17940 FvH4_4g17940
malus_domestica	MD13G1169200.v1.1 MD13G1169300.v1.1 MD16G1170500.v1.1
prunus_persica	Prupe.1G137600_v2.0.a1 Prupe.1G137600_v2.0.a1 Prupe.1G137600_v2.0.a1 Prupe.1G137900_v2.0.a1
pyrus_communis	pycom13g14490 pycom16g14290
rosa_chinensis	RchiOBHm_Chr4g0422101 RchiOBHm_Chr4g0422111
rosa_laevigata	RLG00000007635
rosa_multiflora	Rmu_sc0009286.1_g000003 Rmu_sc0009286.1_g000004
rosa_roxburghii	Rroxscaffold_3G00224970 Rroxscaffold_4G00330840 Rroxscaffold_5G00364180 Rroxscaffold_5G00364190 Rroxscaffold_6G00405940
rosa_rugosa	Rorug04G0177200 Rorug04G0177300 Rorug04G0177400 Rorug04G0177500
rosa_samantha	Rh4AG236800 Rh4AG236900 Rh4BG239600 Rh4BG239700 Rh4CG251500 Rh4CG251600 Rh4DG235700 Rh4DG235800 Rh6BG107100
rosa_wichuraiana	Rw4G020480 Rw4G020490

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	219
AciI	CCGC	3 cut(s)	6, 9, 113
AclWI	GGATC	2 cut(s)	17, 270
AcoI	YGGCCR	1 cut(s)	3
AcsI	RAATTY	2 cut(s)	150, 278
AcuI	CTGAAG	2 cut(s)	276, 287
AgsI	TTSAA	5 cut(s)	121, 155, 163, 284, 408
AhlI	ACTAGT	1 cut(s)	329
AleI	CACNNNNGTG	2 cut(s)	203, 257
AluBI	AGCT	5 cut(s)	109, 139, 226, 434, 441
AluI	AGCT	5 cut(s)	109, 139, 226, 434, 441
Alw26I	GTCTC	1 cut(s)	364
AlwI	GGATC	2 cut(s)	17, 270
AoxI	GGCC	1 cut(s)	3
ApeKI	GCWGC	3 cut(s)	307, 310, 349
ApoI	RAATTY	2 cut(s)	150, 278
AspS9I	GGNCC	1 cut(s)	294
AvaII	GGWCC	1 cut(s)	294
BbvI	GCAGC	3 cut(s)	319, 322, 336
BcoDI	GTCTC	1 cut(s)	364
BcuI	ACTAGT	1 cut(s)	329
BfaI	CTAG	2 cut(s)	330, 442
BfmI	CTRYAG	1 cut(s)	350
BisI	GCNGC	5 cut(s)	6, 9, 308, 311, 350
BlsI	GCNGC	5 cut(s)	7, 10, 309, 312, 351
Bme18I	GGWCC	1 cut(s)	294
BmgT120I	GGNCC	1 cut(s)	294
BmiI	GGNNCC	1 cut(s)	103
BplI	GAGNNNNNCTC	2 cut(s)	283, 315
BpmI	CTGGAG	1 cut(s)	58
BpuEI	CTTGAG	2 cut(s)	186, 221
BsaJI	CCNNGG	1 cut(s)	411
Bse1I	ACTGG	1 cut(s)	75
BseDI	CCNNGG	1 cut(s)	411
BseGI	GGATG	2 cut(s)	361, 424
BseMII	CTCAG	3 cut(s)	126, 281, 375
BseNI	ACTGG	1 cut(s)	75
BseRI	GAGGAG	3 cut(s)	33, 51, 61
BseXI	GCAGC	3 cut(s)	319, 322, 336
Bsh1236I	CGCG	1 cut(s)	219
BshFI	GGCC	1 cut(s)	5
BsmAI	GTCTC	1 cut(s)	364
BsmI	GAATGC	1 cut(s)	91
BsnI	GGCC	1 cut(s)	5
Bsp143I	GATC	3 cut(s)	22, 262, 272
Bsp68I	TCGCGA	1 cut(s)	219
BspACI	CCGC	3 cut(s)	6, 9, 113
BspANI	GGCC	1 cut(s)	5
BspCNI	CTCAG	3 cut(s)	127, 282, 374
BspFNI	CGCG	1 cut(s)	219
BspLI	GGNNCC	1 cut(s)	103
BspMAI	CTGCAG	1 cut(s)	354
BspPI	GGATC	2 cut(s)	17, 270
BsrI	ACTGG	1 cut(s)	75
BssECI	CCNNGG	1 cut(s)	411
BssMI	GATC	3 cut(s)	22, 262, 272
Bst6I	CTCTTC	2 cut(s)	22, 306
BstAPI	GCANNNNNTGC	1 cut(s)	172
BstC8I	GCNNGC	1 cut(s)	111
BstDEI	CTNAG	4 cut(s)	135, 290, 335, 361
BstF5I	GGATG	2 cut(s)	361, 424
BstFNI	CGCG	1 cut(s)	219
BstKTI	GATC	3 cut(s)	25, 265, 275
BstMAI	GTCTC	1 cut(s)	364
BstMBI	GATC	3 cut(s)	22, 262, 272
BstMWI	GCNNNNNNNGC	2 cut(s)	172, 431
BstSFI	CTRYAG	1 cut(s)	350
BstUI	CGCG	1 cut(s)	219
BstV1I	GCAGC	3 cut(s)	319, 322, 336
BsuRI	GGCC	1 cut(s)	5
BtsCI	GGATG	2 cut(s)	361, 424
BtsIMutI	CAGTG	1 cut(s)	252
BtuMI	TCGCGA	1 cut(s)	219
Cac8I	GCNNGC	1 cut(s)	111
Cfr13I	GGNCC	1 cut(s)	294
CspCI	CAANNNNNGTGG	2 cut(s)	396, 431
DdeI	CTNAG	4 cut(s)	135, 290, 335, 361
DpnI	GATC	3 cut(s)	24, 264, 274
DpnII	GATC	3 cut(s)	22, 262, 272
EaeI	YGGCCR	1 cut(s)	3
Eam1104I	CTCTTC	2 cut(s)	22, 306
EarI	CTCTTC	2 cut(s)	22, 306
Eco47I	GGWCC	1 cut(s)	294
Eco57I	CTGAAG	2 cut(s)	276, 287
EcoRI	GAATTC	1 cut(s)	150
FaiI	YATR	1 cut(s)	321
Fnu4HI	GCNGC	5 cut(s)	6, 9, 308, 311, 350
FokI	GGATG	2 cut(s)	368, 431
Fsp4HI	GCNGC	5 cut(s)	6, 9, 308, 311, 350
FspBI	CTAG	2 cut(s)	330, 442
GluI	GCNGC	5 cut(s)	6, 9, 308, 311, 350
GsuI	CTGGAG	1 cut(s)	58
HaeIII	GGCC	1 cut(s)	5
HindIII	AAGCTT	1 cut(s)	107
HinfI	GANTC	4 cut(s)	31, 91, 125, 395
Hpy188I	TCNGA	5 cut(s)	22, 96, 136, 232, 277
Hpy188III	TCNNGA	4 cut(s)	218, 238, 284, 363
Hpy99I	CGWCG	1 cut(s)	224
HpyCH4V	TGCA	2 cut(s)	175, 352
HpyF10VI	GCNNNNNNNGC	2 cut(s)	172, 431
HpyF3I	CTNAG	4 cut(s)	135, 290, 335, 361
Kzo9I	GATC	3 cut(s)	22, 262, 272
LmnI	GCTCC	2 cut(s)	64, 107
LpnPI	CCDG	6 cut(s)	63, 69, 88, 152, 338, 348
Lsp1109I	GCAGC	3 cut(s)	319, 322, 336
MaeI	CTAG	2 cut(s)	330, 442
MaeIII	GTNAC	1 cut(s)	322
MalI	GATC	3 cut(s)	24, 264, 274
MboI	GATC	3 cut(s)	22, 262, 272
MboII	GAAGA	3 cut(s)	9, 293, 404
MluCI	AATT	3 cut(s)	116, 150, 278
MlyI	GAGTC	1 cut(s)	85
MmeI	TCCRAC	1 cut(s)	161
MseI	TTAA	1 cut(s)	188
MslI	CAYNNNNRTG	2 cut(s)	203, 257
Mva1269I	GAATGC	1 cut(s)	91
MvnI	CGCG	1 cut(s)	219
MwoI	GCNNNNNNNGC	2 cut(s)	172, 431
NdeII	GATC	3 cut(s)	22, 262, 272
NlaIV	GGNNCC	1 cut(s)	103
NruI	TCGCGA	1 cut(s)	219
OliI	CACNNNNGTG	2 cut(s)	203, 257
PctI	GAATGC	1 cut(s)	91
PfeI	GAWTC	3 cut(s)	31, 125, 395
PkrI	GCNGC	5 cut(s)	7, 10, 309, 312, 351
PleI	GAGTC	1 cut(s)	85
PpsI	GAGTC	1 cut(s)	85
PspN4I	GGNNCC	1 cut(s)	103
PspPI	GGNCC	1 cut(s)	294
PstI	CTGCAG	1 cut(s)	354
RruI	TCGCGA	1 cut(s)	219
RseI	CAYNNNNRTG	2 cut(s)	203, 257
SaqAI	TTAA	1 cut(s)	188
SatI	GCNGC	5 cut(s)	6, 9, 308, 311, 350
Sau3AI	GATC	3 cut(s)	22, 262, 272
Sau96I	GGNCC	1 cut(s)	294
SchI	GAGTC	1 cut(s)	85
SetI	ASST	8 cut(s)	111, 134, 141, 188, 228, 417, 436, 443
SfcI	CTRYAG	1 cut(s)	350
SinI	GGWCC	1 cut(s)	294
SmiMI	CAYNNNNRTG	2 cut(s)	203, 257
SmlI	CTYRAG	2 cut(s)	201, 236
SmoI	CTYRAG	2 cut(s)	201, 236
SpeI	ACTAGT	1 cut(s)	329
Sse9I	AATT	3 cut(s)	116, 150, 278
SsiI	CCGC	3 cut(s)	6, 9, 113
SspMI	CTAG	2 cut(s)	330, 442
TaqI	TCGA	3 cut(s)	29, 128, 271
TasI	AATT	3 cut(s)	116, 150, 278
TauI	GCSGC	2 cut(s)	8, 11
TfiI	GAWTC	3 cut(s)	31, 125, 395
Tru1I	TTAA	1 cut(s)	188
Tru9I	TTAA	1 cut(s)	188
TscAI	CASTG	1 cut(s)	259
TseI	GCWGC	3 cut(s)	307, 310, 349
TspDTI	ATGAA	2 cut(s)	138, 435
TspRI	CASTG	1 cut(s)	259
VpaK11BI	GGWCC	1 cut(s)	294
XapI	RAATTY	2 cut(s)	150, 278
XspI	CTAG	2 cut(s)	330, 442

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.