Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4A

Orthogroup ID

OG0002436

Physical Location & Seq

Genomic Coordinates Forward (+)

54175462 .. 54177555

Gene Structure 2094 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4AG236800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 417 bp

ATGGCCAACTCCGATGCCACCGCTTCTCTTCCTCCATCGGCTCCTCTCTCCGTCGCTCCTCCGCTCTCATCCACAACAAAGGAGAATCTGACTCCAGTTTCCTGCAAGATTGAGGAACTGACGGAATCCAGGTCTGAGCTGTTTGGCAGAATTCAAGGGTTGAAGAAGGATTTACAAACATGGAGGTCAAAGCTAGACTCGCAAGTTAAAGTCTACCGCGATGAACTTTCAGAACTCAAGCAATCGCTCAACACTGAAGTGGAGCAACTTCGATCGGAATTTCAAGAACTGAGGACCACTCTTCAGCAGCAGCAAGATGATGTAACTACTAGTCTTCGGAACTTTGGGCTACAGGACGTGACTGGAGATTCCAAGGCTGATAATACTGAGGTTGAAGGGAAGGCTCTCAAAGAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

138

Amino Acids

15.37

Weight (kDa)

4.81

Isoelectric Point (pI)

68.93

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002436)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G15790 AT4G15790
fragaria_vesca	FvH4_4g17930 FvH4_4g17930 FvH4_4g17940 FvH4_4g17940 FvH4_4g17940
malus_domestica	MD13G1169200.v1.1 MD13G1169300.v1.1 MD16G1170500.v1.1
prunus_persica	Prupe.1G137600_v2.0.a1 Prupe.1G137600_v2.0.a1 Prupe.1G137600_v2.0.a1 Prupe.1G137900_v2.0.a1
pyrus_communis	pycom13g14490 pycom16g14290
rosa_chinensis	RchiOBHm_Chr4g0422101 RchiOBHm_Chr4g0422111
rosa_laevigata	RLG00000007635
rosa_multiflora	Rmu_sc0009286.1_g000003 Rmu_sc0009286.1_g000004
rosa_roxburghii	Rroxscaffold_3G00224970 Rroxscaffold_4G00330840 Rroxscaffold_5G00364180 Rroxscaffold_5G00364190 Rroxscaffold_6G00405940
rosa_rugosa	Rorug04G0177200 Rorug04G0177300 Rorug04G0177400 Rorug04G0177500
rosa_samantha	Rh4AG236800 Rh4AG236900 Rh4BG239600 Rh4BG239700 Rh4CG251500 Rh4CG251600 Rh4DG235700 Rh4DG235800 Rh6BG107100
rosa_wichuraiana	Rw4G020480 Rw4G020490

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	64
AccI	GTMKAC	1 cut(s)	213
AccII	CGCG	1 cut(s)	219
AciI	CCGC	3 cut(s)	21, 62, 217
AcoI	YGGCCR	1 cut(s)	3
AcsI	RAATTY	2 cut(s)	150, 278
AcuI	CTGAAG	2 cut(s)	276, 287
AgsI	TTSAA	4 cut(s)	155, 163, 284, 395
AhlI	ACTAGT	1 cut(s)	329
AjiI	CACGTC	1 cut(s)	358
AjnI	CCWGG	1 cut(s)	128
AleI	CACNNNNGTG	1 cut(s)	257
AluBI	AGCT	2 cut(s)	139, 193
AluI	AGCT	2 cut(s)	139, 193
AoxI	GGCC	1 cut(s)	3
ApeKI	GCWGC	2 cut(s)	307, 310
ApoI	RAATTY	2 cut(s)	150, 278
AspS9I	GGNCC	1 cut(s)	294
AvaII	GGWCC	1 cut(s)	294
BalI	TGGCCA	1 cut(s)	5
BbsI	GAAGAC	1 cut(s)	326
BbvI	GCAGC	2 cut(s)	319, 322
BccI	CCATC	1 cut(s)	43
BciT130I	CCWGG	1 cut(s)	130
BcuI	ACTAGT	1 cut(s)	329
BfaI	CTAG	2 cut(s)	194, 330
BfmI	CTRYAG	1 cut(s)	350
BisI	GCNGC	2 cut(s)	308, 311
BlsI	GCNGC	2 cut(s)	309, 312
Bme1390I	CCNGG	1 cut(s)	130
Bme18I	GGWCC	1 cut(s)	294
BmgBI	CACGTC	1 cut(s)	358
BmgT120I	GGNCC	1 cut(s)	294
BmiI	GGNNCC	1 cut(s)	42
BmrFI	CCNGG	1 cut(s)	130
BmsI	GCATC	1 cut(s)	4
BpiI	GAAGAC	1 cut(s)	326
BplI	GAGNNNNNCTC	2 cut(s)	283, 315
BpmI	CTGGAG	2 cut(s)	78, 384
BpuEI	CTTGAG	1 cut(s)	221
BsaJI	CCNNGG	1 cut(s)	372
Bse1I	ACTGG	2 cut(s)	95, 367
BseBI	CCWGG	1 cut(s)	130
BseDI	CCNNGG	1 cut(s)	372
BseGI	GGATG	1 cut(s)	68
BseMII	CTCAG	3 cut(s)	126, 281, 378
BseNI	ACTGG	2 cut(s)	95, 367
BseRI	GAGGAG	2 cut(s)	33, 48
BseXI	GCAGC	2 cut(s)	319, 322
Bsh1236I	CGCG	1 cut(s)	219
Bsh1285I	CGRYCG	1 cut(s)	275
BshFI	GGCC	1 cut(s)	5
BsiEI	CGRYCG	1 cut(s)	275
BsnI	GGCC	1 cut(s)	5
Bsp143I	GATC	1 cut(s)	272
BspACI	CCGC	3 cut(s)	21, 62, 217
BspANI	GGCC	1 cut(s)	5
BspCNI	CTCAG	3 cut(s)	127, 282, 379
BspFNI	CGCG	1 cut(s)	219
BspLI	GGNNCC	1 cut(s)	42
BsrBI	CCGCTC	1 cut(s)	64
BsrI	ACTGG	2 cut(s)	95, 367
BssECI	CCNNGG	1 cut(s)	372
BssMI	GATC	1 cut(s)	272
BssT1I	CCWWGG	1 cut(s)	372
Bst2UI	CCWGG	1 cut(s)	130
Bst6I	CTCTTC	2 cut(s)	33, 306
BstDEI	CTNAG	3 cut(s)	135, 290, 387
BstF5I	GGATG	1 cut(s)	68
BstFNI	CGCG	1 cut(s)	219
BstKTI	GATC	1 cut(s)	275
BstMBI	GATC	1 cut(s)	272
BstMCI	CGRYCG	1 cut(s)	275
BstMWI	GCNNNNNNNGC	1 cut(s)	199
BstNI	CCWGG	1 cut(s)	130
BstSCI	CCNGG	1 cut(s)	128
BstSFI	CTRYAG	1 cut(s)	350
BstUI	CGCG	1 cut(s)	219
BstV1I	GCAGC	2 cut(s)	319, 322
BstV2I	GAAGAC	1 cut(s)	326
BsuRI	GGCC	1 cut(s)	5
BtgZI	GCGATG	1 cut(s)	234
BtrI	CACGTC	1 cut(s)	358
BtsCI	GGATG	1 cut(s)	68
BtsIMutI	CAGTG	1 cut(s)	252
Cfr13I	GGNCC	1 cut(s)	294
CviAII	CATG	1 cut(s)	180
CviJI	RGCY	7 cut(s)	5, 41, 139, 193, 349, 377, 404
CviKI_1	RGCY	7 cut(s)	5, 41, 139, 193, 349, 377, 404
DdeI	CTNAG	3 cut(s)	135, 290, 387
DpnI	GATC	1 cut(s)	274
DpnII	GATC	1 cut(s)	272
EaeI	YGGCCR	1 cut(s)	3
Eam1104I	CTCTTC	2 cut(s)	33, 306
EarI	CTCTTC	2 cut(s)	33, 306
Eco130I	CCWWGG	1 cut(s)	372
Eco47I	GGWCC	1 cut(s)	294
Eco57I	CTGAAG	2 cut(s)	276, 287
EcoRI	GAATTC	1 cut(s)	150
EcoRII	CCWGG	1 cut(s)	128
EcoT14I	CCWWGG	1 cut(s)	372
ErhI	CCWWGG	1 cut(s)	372
FaeI	CATG	1 cut(s)	183
FaiI	YATR	1 cut(s)	181
FatI	CATG	1 cut(s)	179
FblI	GTMKAC	1 cut(s)	213
Fnu4HI	GCNGC	2 cut(s)	308, 311
FokI	GGATG	1 cut(s)	55
Fsp4HI	GCNGC	2 cut(s)	308, 311
FspBI	CTAG	2 cut(s)	194, 330
GluI	GCNGC	2 cut(s)	308, 311
GsuI	CTGGAG	2 cut(s)	78, 384
HaeIII	GGCC	1 cut(s)	5
Hin1II	CATG	1 cut(s)	183
HinfI	GANTC	5 cut(s)	85, 91, 125, 197, 368
Hpy166II	GTNNAC	1 cut(s)	214
Hpy188I	TCNGA	6 cut(s)	13, 90, 136, 232, 277, 339
Hpy188III	TCNNGA	1 cut(s)	284
Hpy8I	GTNNAC	1 cut(s)	214
Hpy99I	CGWCG	1 cut(s)	56
HpyAV	CCTTC	3 cut(s)	160, 389, 394
HpyCH4IV	ACGT	1 cut(s)	357
HpyCH4V	TGCA	1 cut(s)	105
HpyF10VI	GCNNNNNNNGC	1 cut(s)	199
HpyF3I	CTNAG	3 cut(s)	135, 290, 387
HpySE526I	ACGT	1 cut(s)	357
Hsp92II	CATG	1 cut(s)	183
Kzo9I	GATC	1 cut(s)	272
LmnI	GCTCC	3 cut(s)	46, 61, 262
LpnPI	CCDG	6 cut(s)	108, 115, 115, 142, 338, 348
Lsp1109I	GCAGC	2 cut(s)	319, 322
LweI	GCATC	1 cut(s)	4
MaeI	CTAG	2 cut(s)	194, 330
MaeII	ACGT	1 cut(s)	357
MaeIII	GTNAC	2 cut(s)	322, 358
MalI	GATC	1 cut(s)	274
MbiI	CCGCTC	1 cut(s)	64
MboI	GATC	1 cut(s)	272
MboII	GAAGA	4 cut(s)	20, 175, 293, 326
MlsI	TGGCCA	1 cut(s)	5
MluCI	AATT	2 cut(s)	150, 278
MluNI	TGGCCA	1 cut(s)	5
MlyI	GAGTC	2 cut(s)	85, 191
MnlI	CCTC	7 cut(s)	42, 54, 69, 106, 177, 285, 382
Mox20I	TGGCCA	1 cut(s)	5
MscI	TGGCCA	1 cut(s)	5
MseI	TTAA	1 cut(s)	207
MslI	CAYNNNNRTG	1 cut(s)	257
Msp20I	TGGCCA	1 cut(s)	5
MspR9I	CCNGG	1 cut(s)	130
MvaI	CCWGG	1 cut(s)	130
MvnI	CGCG	1 cut(s)	219
MwoI	GCNNNNNNNGC	1 cut(s)	199
NdeII	GATC	1 cut(s)	272
NlaIII	CATG	1 cut(s)	183
NlaIV	GGNNCC	1 cut(s)	42
NmuCI	GTSAC	1 cut(s)	358
OliI	CACNNNNGTG	1 cut(s)	257
PfeI	GAWTC	3 cut(s)	85, 125, 368
PkrI	GCNGC	2 cut(s)	309, 312
Ple19I	CGATCG	1 cut(s)	275
PleI	GAGTC	2 cut(s)	85, 191
PpsI	GAGTC	2 cut(s)	85, 191
Psp6I	CCWGG	1 cut(s)	128
PspGI	CCWGG	1 cut(s)	128
PspN4I	GGNNCC	1 cut(s)	42
PspPI	GGNCC	1 cut(s)	294
PvuI	CGATCG	1 cut(s)	275
RseI	CAYNNNNRTG	1 cut(s)	257
SaqAI	TTAA	1 cut(s)	207
SatI	GCNGC	2 cut(s)	308, 311
Sau3AI	GATC	1 cut(s)	272
Sau96I	GGNCC	1 cut(s)	294
SchI	GAGTC	2 cut(s)	85, 191
ScrFI	CCNGG	1 cut(s)	130
SetI	ASST	6 cut(s)	134, 141, 188, 195, 360, 393
SfaNI	GCATC	1 cut(s)	4
SfcI	CTRYAG	1 cut(s)	350
SinI	GGWCC	1 cut(s)	294
SmiMI	CAYNNNNRTG	1 cut(s)	257
SmlI	CTYRAG	1 cut(s)	236
SmoI	CTYRAG	1 cut(s)	236
SpeI	ACTAGT	1 cut(s)	329
Sse9I	AATT	2 cut(s)	150, 278
SsiI	CCGC	3 cut(s)	21, 62, 217
SspMI	CTAG	2 cut(s)	194, 330
StyD4I	CCNGG	1 cut(s)	128
StyI	CCWWGG	1 cut(s)	372
TaiI	ACGT	1 cut(s)	360
TaqI	TCGA	1 cut(s)	271
TasI	AATT	2 cut(s)	150, 278
TfiI	GAWTC	3 cut(s)	85, 125, 368
Tru1I	TTAA	1 cut(s)	207
Tru9I	TTAA	1 cut(s)	207
TscAI	CASTG	1 cut(s)	259
TseFI	GTSAC	1 cut(s)	358
TseI	GCWGC	2 cut(s)	307, 310
Tsp45I	GTSAC	1 cut(s)	358
TspDTI	ATGAA	1 cut(s)	237
TspGWI	ACGGA	2 cut(s)	40, 137
TspRI	CASTG	1 cut(s)	259
VpaK11BI	GGWCC	1 cut(s)	294
XapI	RAATTY	2 cut(s)	150, 278
XmiI	GTMKAC	1 cut(s)	213
XspI	CTAG	2 cut(s)	194, 330

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.