Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

OG0002436

Physical Location & Seq

Genomic Coordinates Forward (+)

10792613 .. 10794899

Gene Structure 2287 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G137900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 465 bp

ATGGCCGTCAACTCTTCTGATTTTTCAACCCCGCCTCTCCCTGCCTCTCCTCTTCCACTCTCATCCACGAAGGAGAATCTGACCCCCTTTGGCTCCAAAATTGCGGAATTGAATGAATCGAGGTCTGAGCTGCTTGGCAGAATTCAAGGGTTGAAGCAGGATTTGCAAAGTTGGAGGTCAAAATTGGACATTCAAGTTAAGGTCTACCGCGATGAGCTTTCGGAACTTAAGAAATCACTCAACACTGAAGTGGATCAGCTTCGATCAGAATTCCAAGAACTGAGGACCACTCTTCAGCAGCAGCAAGAAGATGTTACTACTAGTCTTAGAAACTTGGGGCTGCAGGATGTCTCAGGAGATAAAAAAGAAGGCCAAGAGACCCAAGATACTGTGGTTGAAGAAAACGGTGACAAAGAGTCAAATGTTTCAACTAAGGAGTTTGGGACTAAAGAAGCTGAAAGCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

155

Amino Acids

17.23

Weight (kDa)

4.65

Isoelectric Point (pI)

59.14

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0002436)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G15790 AT4G15790
fragaria_vesca	FvH4_4g17930 FvH4_4g17930 FvH4_4g17940 FvH4_4g17940 FvH4_4g17940
malus_domestica	MD13G1169200.v1.1 MD13G1169300.v1.1 MD16G1170500.v1.1
prunus_persica	Prupe.1G137600_v2.0.a1 Prupe.1G137600_v2.0.a1 Prupe.1G137600_v2.0.a1 Prupe.1G137900_v2.0.a1
pyrus_communis	pycom13g14490 pycom16g14290
rosa_chinensis	RchiOBHm_Chr4g0422101 RchiOBHm_Chr4g0422111
rosa_laevigata	RLG00000007635
rosa_multiflora	Rmu_sc0009286.1_g000003 Rmu_sc0009286.1_g000004
rosa_roxburghii	Rroxscaffold_3G00224970 Rroxscaffold_4G00330840 Rroxscaffold_5G00364180 Rroxscaffold_5G00364190 Rroxscaffold_6G00405940
rosa_rugosa	Rorug04G0177200 Rorug04G0177300 Rorug04G0177400 Rorug04G0177500
rosa_samantha	Rh4AG236800 Rh4AG236900 Rh4BG239600 Rh4BG239700 Rh4CG251500 Rh4CG251600 Rh4DG235700 Rh4DG235800 Rh6BG107100
rosa_wichuraiana	Rw4G020480 Rw4G020490

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	204
AccII	CGCG	1 cut(s)	210
AciI	CCGC	3 cut(s)	32, 104, 208
AclWI	GGATC	1 cut(s)	261
AcoI	YGGCCR	1 cut(s)	3
AcsI	RAATTY	2 cut(s)	141, 269
AcuI	CTGAAG	2 cut(s)	267, 278
AflII	CTTAAG	1 cut(s)	227
AgsI	TTSAA	7 cut(s)	27, 112, 146, 154, 194, 398, 429
AhdI	GACNNNNNGTC	1 cut(s)	415
AhlI	ACTAGT	1 cut(s)	320
AleI	CACNNNNGTG	1 cut(s)	248
AluBI	AGCT	5 cut(s)	130, 217, 259, 455, 462
AluI	AGCT	5 cut(s)	130, 217, 259, 455, 462
Alw26I	GTCTC	2 cut(s)	355, 371
AlwI	GGATC	1 cut(s)	261
AoxI	GGCC	2 cut(s)	3, 370
ApeKI	GCWGC	4 cut(s)	130, 298, 301, 340
ApoI	RAATTY	2 cut(s)	141, 269
AspS9I	GGNCC	1 cut(s)	285
AsuHPI	GGTGA	1 cut(s)	419
AvaII	GGWCC	1 cut(s)	285
BaeI	ACNNNNGTAYC	2 cut(s)	378, 411
BbvI	GCAGC	4 cut(s)	117, 310, 313, 327
BcoDI	GTCTC	2 cut(s)	355, 371
BcuI	ACTAGT	1 cut(s)	320
BfaI	CTAG	2 cut(s)	321, 463
BfmI	CTRYAG	1 cut(s)	341
BfrI	CTTAAG	1 cut(s)	227
BisI	GCNGC	4 cut(s)	131, 299, 302, 341
BlsI	GCNGC	4 cut(s)	132, 300, 303, 342
Bme18I	GGWCC	1 cut(s)	285
BmeRI	GACNNNNNGTC	1 cut(s)	415
BmgT120I	GGNCC	1 cut(s)	285
BmiI	GGNNCC	1 cut(s)	94
BplI	GAGNNNNNCTC	2 cut(s)	274, 306
BsaI	GGTCTC	1 cut(s)	371
BseGI	GGATG	2 cut(s)	62, 352
BseMII	CTCAG	3 cut(s)	117, 272, 366
BseRI	GAGGAG	1 cut(s)	39
BseXI	GCAGC	4 cut(s)	117, 310, 313, 327
Bsh1236I	CGCG	1 cut(s)	210
BshFI	GGCC	2 cut(s)	5, 372
BslFI	GGGAC	1 cut(s)	457
BsmAI	GTCTC	2 cut(s)	355, 371
BsmFI	GGGAC	1 cut(s)	457
BsnI	GGCC	2 cut(s)	5, 372
Bso31I	GGTCTC	1 cut(s)	371
Bsp143I	GATC	2 cut(s)	253, 263
BspACI	CCGC	3 cut(s)	32, 104, 208
BspANI	GGCC	2 cut(s)	5, 372
BspCNI	CTCAG	3 cut(s)	118, 273, 365
BspFNI	CGCG	1 cut(s)	210
BspLI	GGNNCC	1 cut(s)	94
BspMAI	CTGCAG	1 cut(s)	345
BspPI	GGATC	1 cut(s)	261
BspTI	CTTAAG	1 cut(s)	227
BspTNI	GGTCTC	1 cut(s)	371
BssMI	GATC	2 cut(s)	253, 263
Bst4CI	ACNGT	2 cut(s)	391, 407
Bst6I	CTCTTC	3 cut(s)	19, 57, 297
BstAFI	CTTAAG	1 cut(s)	227
BstAPI	GCANNNNNTGC	1 cut(s)	163
BstDEI	CTNAG	5 cut(s)	126, 281, 326, 352, 432
BstF5I	GGATG	2 cut(s)	62, 352
BstFNI	CGCG	1 cut(s)	210
BstKTI	GATC	2 cut(s)	256, 266
BstMAI	GTCTC	2 cut(s)	355, 371
BstMBI	GATC	2 cut(s)	253, 263
BstMWI	GCNNNNNNNGC	1 cut(s)	163
BstSFI	CTRYAG	1 cut(s)	341
BstUI	CGCG	1 cut(s)	210
BstV1I	GCAGC	4 cut(s)	117, 310, 313, 327
BsuRI	GGCC	2 cut(s)	5, 372
BtgZI	GCGATG	1 cut(s)	225
BtsCI	GGATG	2 cut(s)	62, 352
BtsIMutI	CAGTG	1 cut(s)	243
Cfr13I	GGNCC	1 cut(s)	285
CviJI	RGCY	9 cut(s)	5, 93, 130, 217, 259, 340, 372, 455, 462
CviKI_1	RGCY	9 cut(s)	5, 93, 130, 217, 259, 340, 372, 455, 462
DdeI	CTNAG	5 cut(s)	126, 281, 326, 352, 432
DpnI	GATC	2 cut(s)	255, 265
DpnII	GATC	2 cut(s)	253, 263
DriI	GACNNNNNGTC	1 cut(s)	415
EaeI	YGGCCR	1 cut(s)	3
Eam1104I	CTCTTC	3 cut(s)	19, 57, 297
Eam1105I	GACNNNNNGTC	1 cut(s)	415
EarI	CTCTTC	3 cut(s)	19, 57, 297
Eco31I	GGTCTC	1 cut(s)	371
Eco47I	GGWCC	1 cut(s)	285
Eco57I	CTGAAG	2 cut(s)	267, 278
EcoRI	GAATTC	2 cut(s)	141, 269
FaqI	GGGAC	1 cut(s)	457
FauI	CCCGC	1 cut(s)	39
FblI	GTMKAC	1 cut(s)	204
Fnu4HI	GCNGC	4 cut(s)	131, 299, 302, 341
FokI	GGATG	2 cut(s)	49, 359
Fsp4HI	GCNGC	4 cut(s)	131, 299, 302, 341
FspBI	CTAG	2 cut(s)	321, 463
GluI	GCNGC	4 cut(s)	131, 299, 302, 341
HaeIII	GGCC	2 cut(s)	5, 372
HincII	GTYRAC	1 cut(s)	10
HindII	GTYRAC	1 cut(s)	10
HinfI	GANTC	3 cut(s)	76, 116, 416
HphI	GGTGA	1 cut(s)	419
Hpy166II	GTNNAC	2 cut(s)	10, 205
Hpy188I	TCNGA	5 cut(s)	19, 81, 127, 223, 268
Hpy188III	TCNNGA	1 cut(s)	354
Hpy8I	GTNNAC	2 cut(s)	10, 205
HpyAV	CCTTC	2 cut(s)	64, 362
HpyCH4III	ACNGT	2 cut(s)	391, 407
HpyCH4V	TGCA	2 cut(s)	166, 343
HpyF10VI	GCNNNNNNNGC	1 cut(s)	163
HpyF3I	CTNAG	5 cut(s)	126, 281, 326, 352, 432
Kzo9I	GATC	2 cut(s)	253, 263
LmnI	GCTCC	1 cut(s)	98
LpnPI	CCDG	4 cut(s)	54, 143, 329, 339
Lsp1109I	GCAGC	4 cut(s)	117, 310, 313, 327
MaeI	CTAG	2 cut(s)	321, 463
MaeIII	GTNAC	2 cut(s)	313, 407
MalI	GATC	2 cut(s)	255, 265
MboI	GATC	2 cut(s)	253, 263
MboII	GAAGA	5 cut(s)	6, 44, 284, 320, 410
MluCI	AATT	5 cut(s)	99, 107, 141, 182, 269
MlyI	GAGTC	1 cut(s)	425
MmeI	TCCRAC	1 cut(s)	152
MnlI	CCTC	6 cut(s)	45, 55, 60, 114, 168, 276
MseI	TTAA	2 cut(s)	198, 228
MslI	CAYNNNNRTG	1 cut(s)	248
MspCI	CTTAAG	1 cut(s)	227
MvnI	CGCG	1 cut(s)	210
MwoI	GCNNNNNNNGC	1 cut(s)	163
NdeII	GATC	2 cut(s)	253, 263
NlaIV	GGNNCC	1 cut(s)	94
NmuCI	GTSAC	1 cut(s)	407
OliI	CACNNNNGTG	1 cut(s)	248
PfeI	GAWTC	2 cut(s)	76, 116
PkrI	GCNGC	4 cut(s)	132, 300, 303, 342
PleI	GAGTC	1 cut(s)	424
PpsI	GAGTC	1 cut(s)	424
PspN4I	GGNNCC	1 cut(s)	94
PspPI	GGNCC	1 cut(s)	285
PstI	CTGCAG	1 cut(s)	345
RseI	CAYNNNNRTG	1 cut(s)	248
SaqAI	TTAA	2 cut(s)	198, 228
SatI	GCNGC	4 cut(s)	131, 299, 302, 341
Sau3AI	GATC	2 cut(s)	253, 263
Sau96I	GGNCC	1 cut(s)	285
SchI	GAGTC	1 cut(s)	425
SetI	ASST	8 cut(s)	125, 132, 179, 204, 219, 261, 457, 464
SfcI	CTRYAG	1 cut(s)	341
SinI	GGWCC	1 cut(s)	285
SmiMI	CAYNNNNRTG	1 cut(s)	248
SmlI	CTYRAG	1 cut(s)	227
SmoI	CTYRAG	1 cut(s)	227
SpeI	ACTAGT	1 cut(s)	320
Sse9I	AATT	5 cut(s)	99, 107, 141, 182, 269
SsiI	CCGC	3 cut(s)	32, 104, 208
SspMI	CTAG	2 cut(s)	321, 463
TaaI	ACNGT	2 cut(s)	391, 407
TaqI	TCGA	2 cut(s)	119, 262
TasI	AATT	5 cut(s)	99, 107, 141, 182, 269
TfiI	GAWTC	2 cut(s)	76, 116
Tru1I	TTAA	2 cut(s)	198, 228
Tru9I	TTAA	2 cut(s)	198, 228
TscAI	CASTG	1 cut(s)	250
TseFI	GTSAC	1 cut(s)	407
TseI	GCWGC	4 cut(s)	130, 298, 301, 340
Tsp45I	GTSAC	1 cut(s)	407
TspDTI	ATGAA	1 cut(s)	129
TspRI	CASTG	1 cut(s)	250
Vha464I	CTTAAG	1 cut(s)	227
VpaK11BI	GGWCC	1 cut(s)	285
XapI	RAATTY	2 cut(s)	141, 269
XmiI	GTMKAC	1 cut(s)	204
XspI	CTAG	2 cut(s)	321, 463

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.