Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr16

Orthogroup ID

OG0008027

Physical Location & Seq

Genomic Coordinates Forward (+)

10319838 .. 10321802

Gene Structure 1965 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom16g14280.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1293 bp

ATGTCAAGGTTGGATATATTATCATCTTCTTTTCAGAGTAGTATATCGAACTTAAGTTGCAGTCCATCTACACCTGATTCTGATTCTTACTTAATGAAATCCACGAGTCCTTCCAGAAATGATAGTTTTCTTAGTGGCATGGAAGTGCAAGTGGCAGGTGGAGCTGCTGGTGAAGACAGGGTCCAAGCTGTTTGTTCTGAAGAAAATGGGTGGCTCTTTTGTGCAATTTATGACGGTTTCAATGGAAGAGACGCAGCTGATTTTCTGGCTGGGACACTGTATGAAACCATCATATTTCACTTTAATTCATTAGACTGGGAATCAAGTCAGGAATCCATCAAAGCTTCTAATGATCTAGATATAGATGAGTCCCTTCCATATATAGGAGATGATAGTACTATTAGTGGAGAAAGATTTTCATCCGGAATTTATGCACACAAGGATTCAAGTTTTGACAATACCTCTAAGAATGCTCCATGTGCAAAAGTAAAAACATTAACTGATTCGTTTAGGCATGGGGTGCTTGATAGCCTCCAACAAGCTCTTAGTCAGGCCGAGAATGATTTTCTATGCATGGTTGACCAGGAAATGGTGGATCGCCCAGATTTAGTTTCCGTTGGGTGTTGTGTTTTAGTTGCACTTCTACATGGAAAGGATTTGTATACACTTAATTTAGGTGACAGCCGAGCTGTATTGGCAACATATGGTGATGGTTATTTAATGAGTGGGAGTGATAGGTTAAAGGCTATCCAGCTCACTGATAGTCATACAGTTGATGATGAAAGTGAGAGAATGCGAGTTTTGTGTGAACATCCTGACGATCCCATGACCGTTGTGGCTGGAAAAGTAAAGGGGAAATTGAAGGTCACTCGAGCTTTTGGAGTTGGTTACTTGAAAAAGAAAAAACTGAATGATGCATTGATGGGAATTCTTCAAGTTCGTAACCTCATAAGCCCACCATATGTTTCCACTCAACCAGCGTTGAATGTGCACAGAATATCAAAATCTGATTGCTTTGTAGTACTTGGTAGTGATGGCCTGTTTGACTTTTTTACCAATGACGAGGCAGTAAAGCTTGTCCACTCCTATATCTTGAGCAACCCCTCTGGCGATCCAGCTAAGTTTCTGCTCGAGCAGCTTGTAGTAAGAGCAGCCAATTCTGCAGGTTTCAGCATGGAAGAACTCATGAACATTCCAGCAGGAAGGCGGAGGAAGTATCACGATGATGTAACTGTAATTGTGATTATGCTCGGTACAGATCAGCGCACGACAAAGGCGTCAACGTGCGTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PP2C

Protein Analysis

431

Amino Acids

46.96

Weight (kDa)

4.9

Isoelectric Point (pI)

35.63

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008027)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G16560 AT3G16560 AT3G16560 AT3G16560
fragaria_vesca	FvH4_4g17950 FvH4_4g17950 FvH4_4g17950 FvH4_4g17950 FvH4_4g17950
malus_domestica	MD13G1169100.v1.1 MD16G1170400.v1.1
prunus_persica	Prupe.1G137500_v2.0.a1
pyrus_communis	pycom13g14470 pycom16g14280
rosa_chinensis	RchiOBHm_Chr4g0422121
rosa_laevigata	RLG00000007634
rosa_multiflora	Rmu_sc0009286.1_g000005
rosa_roxburghii	Rroxscaffold_5G00364200
rosa_rugosa	Rorug04G0177500
rosa_samantha	Rh4AG237000 Rh4BG239800 Rh4CG251700 Rh4DG235900
rosa_wichuraiana	Rw4G020500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	146
AasI	GACNNNNNNGTC	1 cut(s)	1276
Acc36I	ACCTGC	2 cut(s)	146, 1154
AccB7I	CCANNNNNTGG	1 cut(s)	589
AccI	GTMKAC	1 cut(s)	662
AccIII	TCCGGA	1 cut(s)	422
AciI	CCGC	1 cut(s)	1207
AclWI	GGATC	3 cut(s)	603, 815, 1106
AcsI	RAATTY	2 cut(s)	426, 927
AcuI	CTGAAG	1 cut(s)	219
AcyI	GRCGYC	1 cut(s)	1277
AfaI	GTAC	3 cut(s)	397, 1023, 1255
AfiI	CCNNNNNNNGG	2 cut(s)	383, 589
AflII	CTTAAG	1 cut(s)	52
AgsI	TTSAA	6 cut(s)	241, 447, 862, 895, 935, 985
AjnI	CCWGG	1 cut(s)	582
Alw21I	GWGCWC	1 cut(s)	993
Alw26I	GTCTC	1 cut(s)	243
Alw44I	GTGCAC	1 cut(s)	989
AlwI	GGATC	3 cut(s)	603, 815, 1106
Ama87I	CYCGRG	2 cut(s)	870, 1130
Aor13HI	TCCGGA	1 cut(s)	422
AoxI	GGCC	2 cut(s)	552, 1036
ApaLI	GTGCAC	1 cut(s)	989
ApeKI	GCWGC	4 cut(s)	164, 254, 1135, 1151
ApoI	RAATTY	2 cut(s)	426, 927
AspLEI	GCGC	1 cut(s)	1266
AspS9I	GGNCC	1 cut(s)	181
AsuHPI	GGTGA	3 cut(s)	182, 689, 719
AvaI	CYCGRG	2 cut(s)	870, 1130
AvaII	GGWCC	1 cut(s)	181
BaeGI	GKGCMC	1 cut(s)	993
BauI	CACGAG	1 cut(s)	103
BbsI	GAAGAC	1 cut(s)	180
Bbv12I	GWGCWC	1 cut(s)	993
BbvI	GCAGC	4 cut(s)	151, 266, 1147, 1163
BccI	CCATC	6 cut(s)	73, 296, 344, 704, 916, 1028
BciT130I	CCWGG	1 cut(s)	584
BcoDI	GTCTC	1 cut(s)	243
BfaI	CTAG	1 cut(s)	356
BfmI	CTRYAG	1 cut(s)	1161
BfrI	CTTAAG	1 cut(s)	52
BfuAI	ACCTGC	2 cut(s)	146, 1154
BisI	GCNGC	4 cut(s)	165, 255, 1136, 1152
BlsI	GCNGC	4 cut(s)	166, 256, 1137, 1153
BmcAI	AGTACT	2 cut(s)	397, 1023
Bme1390I	CCNGG	1 cut(s)	584
Bme18I	GGWCC	1 cut(s)	181
BmeT110I	CYCGRG	2 cut(s)	870, 1130
BmgT120I	GGNCC	1 cut(s)	181
BmiI	GGNNCC	1 cut(s)	182
BmrFI	CCNGG	1 cut(s)	584
BmrI	ACTGGG	1 cut(s)	325
BmsI	GCATC	1 cut(s)	904
BmuI	ACTGGG	1 cut(s)	325
BpiI	GAAGAC	1 cut(s)	180
BpuEI	CTTGAG	1 cut(s)	1114
BsaBI	GATNNNNATC	1 cut(s)	418
BsaHI	GRCGYC	1 cut(s)	1277
BsaWI	WCCGGW	1 cut(s)	422
Bsc4I	CCNNNNNNNGG	2 cut(s)	383, 589
Bse1I	ACTGG	1 cut(s)	320
Bse8I	GATNNNNATC	1 cut(s)	418
BseAI	TCCGGA	1 cut(s)	422
BseBI	CCWGG	1 cut(s)	584
BseGI	GGATG	2 cut(s)	419, 811
BseJI	GATNNNNATC	1 cut(s)	418
BseLI	CCNNNNNNNGG	2 cut(s)	383, 589
BseNI	ACTGG	1 cut(s)	320
BseSI	GKGCMC	1 cut(s)	993
BseXI	GCAGC	4 cut(s)	151, 266, 1147, 1163
BseYI	CCCAGC	1 cut(s)	269
BshFI	GGCC	2 cut(s)	554, 1038
BsiHKAI	GWGCWC	1 cut(s)	993
BsiHKCI	CYCGRG	2 cut(s)	870, 1130
BsiSI	CCGG	1 cut(s)	423
BslFI	GGGAC	2 cut(s)	286, 355
BslI	CCNNNNNNNGG	2 cut(s)	383, 589
BsmAI	GTCTC	1 cut(s)	243
BsmBI	CGTCTC	1 cut(s)	243
BsmFI	GGGAC	2 cut(s)	286, 355
BsmI	GAATGC	2 cut(s)	475, 798
BsnI	GGCC	2 cut(s)	554, 1038
BsoBI	CYCGRG	2 cut(s)	870, 1130
Bsp1286I	GDGCHC	1 cut(s)	993
Bsp13I	TCCGGA	1 cut(s)	422
Bsp143I	GATC	5 cut(s)	352, 595, 820, 1111, 1258
BspACI	CCGC	1 cut(s)	1207
BspANI	GGCC	2 cut(s)	554, 1038
BspEI	TCCGGA	1 cut(s)	422
BspHI	TCATGA	1 cut(s)	1185
BspLI	GGNNCC	1 cut(s)	182
BspMAI	CTGCAG	1 cut(s)	1165
BspMI	ACCTGC	2 cut(s)	146, 1154
BspPI	GGATC	3 cut(s)	603, 815, 1106
BspTI	CTTAAG	1 cut(s)	52
BsrI	ACTGG	1 cut(s)	320
BssMI	GATC	5 cut(s)	352, 595, 820, 1111, 1258
BssNAI	GTATAC	1 cut(s)	663
BssNI	GRCGYC	1 cut(s)	1277
BssSI	CACGAG	1 cut(s)	103
Bst1107I	GTATAC	1 cut(s)	663
Bst2BI	CACGAG	1 cut(s)	103
Bst2UI	CCWGG	1 cut(s)	584
Bst4CI	ACNGT	5 cut(s)	236, 279, 772, 832, 1234
Bst6I	CTCTTC	1 cut(s)	241
BstACI	GRCGYC	1 cut(s)	1277
BstAFI	CTTAAG	1 cut(s)	52
BstAPI	GCANNNNNTGC	1 cut(s)	520
BstDEI	CTNAG	4 cut(s)	131, 465, 545, 1119
BstF5I	GGATG	2 cut(s)	419, 811
BstHHI	GCGC	1 cut(s)	1266
BstKTI	GATC	5 cut(s)	355, 598, 823, 1114, 1261
BstMAI	GTCTC	1 cut(s)	243
BstMBI	GATC	5 cut(s)	352, 595, 820, 1111, 1258
BstMWI	GCNNNNNNNGC	6 cut(s)	161, 479, 520, 695, 1135, 1160
BstNI	CCWGG	1 cut(s)	584
BstSCI	CCNGG	1 cut(s)	582
BstSFI	CTRYAG	1 cut(s)	1161
BstSLI	GKGCMC	1 cut(s)	993
BstV1I	GCAGC	4 cut(s)	151, 266, 1147, 1163
BstV2I	GAAGAC	1 cut(s)	180
BstZ17I	GTATAC	1 cut(s)	663
BsuRI	GGCC	2 cut(s)	554, 1038
BtsCI	GGATG	2 cut(s)	419, 811
BtsIMutI	CAGTG	2 cut(s)	275, 756
BveI	ACCTGC	2 cut(s)	146, 1154
CciI	TCATGA	1 cut(s)	1185
CfoI	GCGC	1 cut(s)	1266
Cfr13I	GGNCC	1 cut(s)	181
CseI	GACGC	2 cut(s)	260, 1266
Csp6I	GTAC	3 cut(s)	396, 1022, 1254
CviAII	CATG	8 cut(s)	139, 477, 515, 574, 647, 826, 1174, 1186
CviQI	GTAC	3 cut(s)	396, 1022, 1254
DdeI	CTNAG	4 cut(s)	131, 465, 545, 1119
DpnI	GATC	5 cut(s)	354, 597, 822, 1113, 1260
DpnII	GATC	5 cut(s)	352, 595, 820, 1111, 1258
DrdI	GACNNNNNNGTC	1 cut(s)	1276
DseDI	GACNNNNNNGTC	1 cut(s)	1276
Eam1104I	CTCTTC	1 cut(s)	241
EarI	CTCTTC	1 cut(s)	241
EciI	GGCGGA	1 cut(s)	1222
Eco47I	GGWCC	1 cut(s)	181
Eco57I	CTGAAG	1 cut(s)	219
Eco88I	CYCGRG	2 cut(s)	870, 1130
EcoRI	GAATTC	1 cut(s)	927
EcoRII	CCWGG	1 cut(s)	582
EcoT22I	ATGCAT	2 cut(s)	575, 919
Esp3I	CGTCTC	1 cut(s)	243
FaeI	CATG	8 cut(s)	142, 480, 518, 577, 650, 829, 1177, 1189
FaqI	GGGAC	2 cut(s)	286, 355
FatI	CATG	8 cut(s)	138, 476, 514, 573, 646, 825, 1173, 1185
FauNDI	CATATG	2 cut(s)	703, 961
FblI	GTMKAC	1 cut(s)	662
Fnu4HI	GCNGC	4 cut(s)	165, 255, 1136, 1152
FokI	GGATG	2 cut(s)	406, 798
Fsp4HI	GCNGC	4 cut(s)	165, 255, 1136, 1152
FspBI	CTAG	1 cut(s)	356
GlaI	GCGC	1 cut(s)	1265
GluI	GCNGC	4 cut(s)	165, 255, 1136, 1152
GsaI	CCCAGC	1 cut(s)	273
HaeIII	GGCC	2 cut(s)	554, 1038
HapII	CCGG	1 cut(s)	423
HgaI	GACGC	2 cut(s)	260, 1266
HhaI	GCGC	1 cut(s)	1266
Hin1I	GRCGYC	1 cut(s)	1277
Hin1II	CATG	8 cut(s)	142, 480, 518, 577, 650, 829, 1177, 1189
Hin6I	GCGC	1 cut(s)	1264
HinP1I	GCGC	1 cut(s)	1264
HincII	GTYRAC	2 cut(s)	580, 1281
HindII	GTYRAC	2 cut(s)	580, 1281
HindIII	AAGCTT	2 cut(s)	342, 1073
HinfI	GANTC	8 cut(s)	77, 83, 106, 320, 332, 368, 443, 503
HpaII	CCGG	1 cut(s)	423
HphI	GGTGA	3 cut(s)	182, 689, 719
Hpy166II	GTNNAC	6 cut(s)	580, 663, 809, 991, 1081, 1281
Hpy188I	TCNGA	4 cut(s)	36, 82, 199, 1009
Hpy188III	TCNNGA	8 cut(s)	114, 329, 356, 423, 815, 1093, 1186, 1220
Hpy8I	GTNNAC	6 cut(s)	580, 663, 809, 991, 1081, 1281
HpyAV	CCTTC	4 cut(s)	120, 383, 856, 1197
HpyCH4III	ACNGT	5 cut(s)	236, 279, 772, 832, 1234
HpyCH4IV	ACGT	1 cut(s)	1283
HpyF10VI	GCNNNNNNNGC	6 cut(s)	161, 479, 520, 695, 1135, 1160
HpyF3I	CTNAG	4 cut(s)	131, 465, 545, 1119
HpySE526I	ACGT	1 cut(s)	1283
Hsp92I	GRCGYC	1 cut(s)	1277
Hsp92II	CATG	8 cut(s)	142, 480, 518, 577, 650, 829, 1177, 1189
HspAI	GCGC	1 cut(s)	1264
Kpn2I	TCCGGA	1 cut(s)	422
Kzo9I	GATC	5 cut(s)	352, 595, 820, 1111, 1258
LmnI	GCTCC	2 cut(s)	161, 478
Lsp1109I	GCAGC	4 cut(s)	151, 266, 1147, 1163
LweI	GCATC	1 cut(s)	904
MaeI	CTAG	1 cut(s)	356
MaeII	ACGT	1 cut(s)	1283
MaeIII	GTNAC	5 cut(s)	677, 865, 887, 941, 1228
MalI	GATC	5 cut(s)	354, 597, 822, 1113, 1260
MboI	GATC	5 cut(s)	352, 595, 820, 1111, 1258
MboII	GAAGA	6 cut(s)	18, 185, 212, 258, 923, 1190
MhlI	GDGCHC	1 cut(s)	993
MluCI	AATT	8 cut(s)	225, 304, 426, 670, 857, 927, 1156, 1236
MlyI	GAGTC	2 cut(s)	115, 377
MmeI	TCCRAC	1 cut(s)	559
MnlI	CCTC	6 cut(s)	472, 542, 956, 1057, 1114, 1203
Mph1103I	ATGCAT	2 cut(s)	575, 919
MroI	TCCGGA	1 cut(s)	422
MseI	TTAA	7 cut(s)	53, 92, 303, 497, 669, 719, 740
MslI	CAYNNNNRTG	2 cut(s)	143, 1224
MspA1I	CMGCKG	1 cut(s)	257
MspCI	CTTAAG	1 cut(s)	52
MspI	CCGG	1 cut(s)	423
MspR9I	CCNGG	1 cut(s)	584
Mva1269I	GAATGC	2 cut(s)	475, 798
MvaI	CCWGG	1 cut(s)	584
MwoI	GCNNNNNNNGC	6 cut(s)	161, 479, 520, 695, 1135, 1160
NdeI	CATATG	2 cut(s)	703, 961
NdeII	GATC	5 cut(s)	352, 595, 820, 1111, 1258
NlaIII	CATG	8 cut(s)	142, 480, 518, 577, 650, 829, 1177, 1189
NlaIV	GGNNCC	1 cut(s)	182
NmeAIII	GCCGAG	2 cut(s)	580, 710
NmuCI	GTSAC	2 cut(s)	677, 865
NsiI	ATGCAT	2 cut(s)	575, 919
PaeR7I	CTCGAG	2 cut(s)	870, 1130
PagI	TCATGA	1 cut(s)	1185
PaqCI	CACCTGC	1 cut(s)	146
PcsI	WCGNNNNNNNCGW	1 cut(s)	1274
PctI	GAATGC	2 cut(s)	475, 798
PfeI	GAWTC	6 cut(s)	77, 83, 320, 332, 443, 503
PflFI	GACNNNGTC	1 cut(s)	179
PflMI	CCANNNNNTGG	1 cut(s)	589
PkrI	GCNGC	4 cut(s)	166, 256, 1137, 1153
PleI	GAGTC	2 cut(s)	114, 376
PpsI	GAGTC	2 cut(s)	114, 376
Psp6I	CCWGG	1 cut(s)	582
PspFI	CCCAGC	1 cut(s)	269
PspGI	CCWGG	1 cut(s)	582
PspN4I	GGNNCC	1 cut(s)	182
PspPI	GGNCC	1 cut(s)	181
PspXI	VCTCGAGB	2 cut(s)	870, 1130
PstI	CTGCAG	1 cut(s)	1165
PsyI	GACNNNGTC	1 cut(s)	179
PvuII	CAGCTG	1 cut(s)	257
RsaI	GTAC	3 cut(s)	397, 1023, 1255
RsaNI	GTAC	3 cut(s)	396, 1022, 1254
RseI	CAYNNNNRTG	2 cut(s)	143, 1224
SaqAI	TTAA	7 cut(s)	53, 92, 303, 497, 669, 719, 740
SatI	GCNGC	4 cut(s)	165, 255, 1136, 1152
Sau3AI	GATC	5 cut(s)	352, 595, 820, 1111, 1258
Sau96I	GGNCC	1 cut(s)	181
ScaI	AGTACT	2 cut(s)	397, 1023
SchI	GAGTC	2 cut(s)	115, 377
ScrFI	CCNGG	1 cut(s)	584
SduI	GDGCHC	1 cut(s)	993
SfaNI	GCATC	1 cut(s)	904
SfcI	CTRYAG	1 cut(s)	1161
Sfr274I	CTCGAG	2 cut(s)	870, 1130
SinI	GGWCC	1 cut(s)	181
SlaI	CTCGAG	2 cut(s)	870, 1130
SmiMI	CAYNNNNRTG	2 cut(s)	143, 1224
SmlI	CTYRAG	4 cut(s)	52, 870, 1093, 1130
SmoI	CTYRAG	4 cut(s)	52, 870, 1093, 1130
Sse9I	AATT	8 cut(s)	225, 304, 426, 670, 857, 927, 1156, 1236
SsiI	CCGC	1 cut(s)	1207
SspMI	CTAG	1 cut(s)	356
StyD4I	CCNGG	1 cut(s)	582
TaaI	ACNGT	5 cut(s)	236, 279, 772, 832, 1234
TaiI	ACGT	1 cut(s)	1286
TaqI	TCGA	3 cut(s)	47, 871, 1131
TasI	AATT	8 cut(s)	225, 304, 426, 670, 857, 927, 1156, 1236
TatI	WGTACW	2 cut(s)	395, 1021
TfiI	GAWTC	6 cut(s)	77, 83, 320, 332, 443, 503
Tru1I	TTAA	7 cut(s)	53, 92, 303, 497, 669, 719, 740
Tru9I	TTAA	7 cut(s)	53, 92, 303, 497, 669, 719, 740
TscAI	CASTG	2 cut(s)	282, 763
TseFI	GTSAC	2 cut(s)	677, 865
TseI	GCWGC	4 cut(s)	164, 254, 1135, 1151
Tsp45I	GTSAC	2 cut(s)	677, 865
TspDTI	ATGAA	6 cut(s)	110, 297, 297, 408, 795, 1202
TspGWI	ACGGA	1 cut(s)	604
TspRI	CASTG	2 cut(s)	282, 763
Tth111I	GACNNNGTC	1 cut(s)	179
Van91I	CCANNNNNTGG	1 cut(s)	589
Vha464I	CTTAAG	1 cut(s)	52
VneI	GTGCAC	1 cut(s)	989
VpaK11BI	GGWCC	1 cut(s)	181
XapI	RAATTY	2 cut(s)	426, 927
XbaI	TCTAGA	1 cut(s)	355
XcmI	CCANNNNNNNNNTGG	1 cut(s)	832
XhoI	CTCGAG	2 cut(s)	870, 1130
XmiI	GTMKAC	1 cut(s)	662
XspI	CTAG	1 cut(s)	356
ZrmI	AGTACT	2 cut(s)	397, 1023
Zsp2I	ATGCAT	2 cut(s)	575, 919

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.