Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0008706

Physical Location & Seq

Genomic Coordinates Forward (+)

5702929 .. 5705494

Gene Structure 2566 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT3G16760.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1428 bp

ATGAATTCCAACTTCGGGAAGAGATCATCCGGATCGACCAATAGCTTTGATTTCGATCTGGGGCTTGGATCGAGCCAAGGTAGACCTCTGAATGGTCAGAAGAGCCAAACATCTTCTTATTCGAGCTCGAATTCGCAGCCGAGACCTGCGTGGCAGCCTGGTAAGCCGTCGTGGACGCATCAACCTGCACCGAAGCAGAGTACGATCCGATCTGAGATCGGAAGTGGACCGACTTCAATGGTGGGTGATATTCATGGTAAGACGTGGGGGTCAGCTTCGGGATCGGGTTCGGGTATTGGGATTGTGAATAAGGATCCTAGTTTGTTTGGAGATTTGGTTGGTTCTGCGATAGGTCAAGGTAAATCTAGTAGAAACGTGCCGTTGAAGAATGCACCGCCTGTTTCGGCTTCAGGTTCGAGTAAGAGTCCTTATTCTATGGGGAATTTGGGTGATTCGTTGCCTAAATCTGGTAATTCGATGAAAACTGGTGGTGGTATGGGTTATAGCAGTAATCCGAGTGGTTTTTCTGGTGGTTACACGAGCTCCGGTGGTTTTAATGCTAATCTTGGAGGTCCTTCAATGAAAAATATGGCTGGGGGCAATCTAAATGGGTCTGGTCTTCCTTCGAATAGTGATCCATTTGGTTCTTTGGTTGGTTTCGGATCAAAATCATCAGGAAGCAAACCAGGAAAGGTTAACAACAATGCACAGAATGATACTTTTGGGAATTTTCAAGGAGTGTCGAACCTTAACAGTGGCGGTTCTACGGGAACAACTACTCAAATCAACGACTTTGGGGGTTTCCAGGCTTCGAAATCAAACACATTCTCATCAGGAGGTAGCTTCAATGCTTCAAACGTTGATTTTGGTGTGCAACCAAGTGGTCCACAATCTTCGAGTGCAAACGATGATCCATTAGGAATGTTCTCTAATTCCAAACCCTCAGCTGCACCACCTACGCCACAGACCGAAGATTGGGGATTTGAAAGTTTTGACGGTGGGGCTGGTTCCACCACCGAGCTTGATGGTTTGCCACCGCCTCCACCGGGTGTATCAGCTACATCAGCTAAGAACAAGGGCATTGATAACCAGAGACAAGGTCAGTATGCTGATGCCATAAAGTGGCTCTCTTGGGCTGTGATTCTTATGGATAGAGCTGGTGATGAAGCTGGATCAGCCGAGGTTCTTTCAACAAGGGCTTCGTGTTACAAAGAAGTTGGAGAGTATAAGAAAGCTGTAGCCGACTGCACAAAGGTACTTGATCACGACAAGAAGAATGTGACCATTCTGGTTCAACGAGCACTGTTATACGAGAGCATGGAGAAATACAAACTCGGAGCTGAAGACCTAAGGATGGTTCTAAAGATTGATCCCGGGAATAGAATCGCTAGAAGTACTGTTCACCGCCTAACCAAAATGGCTGGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000226 GO:0001578 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006996 GO:0007010 GO:0007017 GO:0008150 GO:0009987 GO:0016043 GO:0022607 GO:0030030 GO:0030031 GO:0034622 GO:0035082 GO:0043933 GO:0044085 GO:0044424 GO:0044444 GO:0044464 GO:0044782 GO:0060271 GO:0065003 GO:0070286 GO:0070925 GO:0071840 GO:0120031 GO:0120036

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

TPR_8

Protein Analysis

475

Amino Acids

48.83

Weight (kDa)

9.24

Isoelectric Point (pI)

37.69

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008706)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G16760 AT3G16760
fragaria_vesca	FvH4_2g05641 FvH4_4g18770 FvH4_4g18770 FvH4_5g32471 FvH4_5g32480
malus_domestica	MD13G1163500.v1.1 MD16G1163000.v1.1
prunus_persica	Prupe.1G130400_v2.0.a1
pyrus_communis	pycom13g13930 pycom16g13810
rosa_chinensis	RchiOBHm_Chr4g0423561
rosa_laevigata	RLG00000007547
rosa_multiflora	Rmu_sc0004342.1_g000013 Rmu_sc0008281.1_g000006
rosa_roxburghii	Rroxscaffold_5G00365790
rosa_rugosa	Rorug04G0188700
rosa_samantha	Rh4AG248200 Rh4BG253400 Rh4CG261500 Rh4DG248700
rosa_wichuraiana	Rw4G021260

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	268
Acc36I	ACCTGC	2 cut(s)	154, 193
AccB7I	CCANNNNNTGG	1 cut(s)	1122
AccI	GTMKAC	1 cut(s)	82
AccIII	TCCGGA	1 cut(s)	29
AciI	CCGC	4 cut(s)	395, 759, 1037, 1405
AclI	AACGTT	1 cut(s)	858
AcsI	RAATTY	4 cut(s)	4, 130, 442, 727
AcuI	CTGAAG	2 cut(s)	393, 1362
AdeI	CACNNNGTG	1 cut(s)	1049
AfaI	GTAC	3 cut(s)	202, 1257, 1396
AfiI	CCNNNNNNNGG	7 cut(s)	15, 92, 467, 975, 1046, 1122, 1354
AgsI	TTSAA	9 cut(s)	237, 385, 579, 734, 847, 855, 986, 1191, 1295
AjiI	CACGTC	1 cut(s)	264
AjnI	CCWGG	3 cut(s)	157, 685, 804
Alw21I	GWGCWC	3 cut(s)	128, 545, 1303
Alw26I	GTCTC	2 cut(s)	136, 1087
Ama87I	CYCGRG	1 cut(s)	1373
Aor13HI	TCCGGA	1 cut(s)	29
ApeKI	GCWGC	3 cut(s)	136, 154, 947
ApoI	RAATTY	4 cut(s)	4, 130, 442, 727
AspS9I	GGNCC	3 cut(s)	227, 572, 884
AsuC2I	CCSGG	3 cut(s)	1047, 1374, 1375
AsuHPI	GGTGA	4 cut(s)	257, 461, 1172, 1394
AsuII	TTCGAA	2 cut(s)	626, 812
AvaI	CYCGRG	1 cut(s)	1373
AvaII	GGWCC	3 cut(s)	227, 572, 884
AxyI	CCTNAGG	1 cut(s)	1349
BamHI	GGATCC	1 cut(s)	313
BanII	GRGCYC	2 cut(s)	128, 545
BauI	CACGAG	1 cut(s)	538
BbsI	GAAGAC	2 cut(s)	611, 1350
Bbv12I	GWGCWC	3 cut(s)	128, 545, 1303
BbvCI	CCTCAGC	1 cut(s)	943
BbvI	GCAGC	3 cut(s)	148, 166, 934
BccI	CCATC	2 cut(s)	1019, 1348
BceAI	ACGGC	2 cut(s)	151, 364
BciT130I	CCWGG	3 cut(s)	159, 687, 806
BclI	TGATCA	1 cut(s)	1261
BcnI	CCSGG	3 cut(s)	1047, 1374, 1375
BcoDI	GTCTC	2 cut(s)	136, 1087
BfaI	CTAG	3 cut(s)	318, 366, 1389
BfmI	CTRYAG	1 cut(s)	1236
BfuAI	ACCTGC	2 cut(s)	154, 193
BisI	GCNGC	3 cut(s)	137, 155, 948
BlsI	GCNGC	3 cut(s)	138, 156, 949
BmcAI	AGTACT	1 cut(s)	1396
Bme1390I	CCNGG	6 cut(s)	159, 687, 806, 1047, 1374, 1375
Bme18I	GGWCC	3 cut(s)	227, 572, 884
BmeT110I	CYCGRG	1 cut(s)	1373
BmgBI	CACGTC	1 cut(s)	264
BmgT120I	GGNCC	3 cut(s)	227, 572, 884
BmiI	GGNNCC	2 cut(s)	315, 1009
BmrFI	CCNGG	6 cut(s)	159, 687, 806, 1047, 1374, 1375
BmsI	GCATC	2 cut(s)	187, 1102
BpiI	GAAGAC	2 cut(s)	611, 1350
Bpu10I	CCTNAGC	1 cut(s)	943
Bpu14I	TTCGAA	2 cut(s)	626, 812
BpuMI	CCSGG	3 cut(s)	1047, 1374, 1375
BsaBI	GATNNNNATC	2 cut(s)	54, 667
BsaI	GGTCTC	1 cut(s)	136
BsaJI	CCNNGG	3 cut(s)	76, 1179, 1373
BsaWI	WCCGGW	2 cut(s)	29, 545
BsaXI	ACNNNNNCTCC	4 cut(s)	321, 351, 527, 557
Bsc4I	CCNNNNNNNGG	7 cut(s)	15, 92, 467, 975, 1046, 1122, 1354
Bse1I	ACTGG	1 cut(s)	490
Bse21I	CCTNAGG	1 cut(s)	1349
Bse8I	GATNNNNATC	2 cut(s)	54, 667
BseAI	TCCGGA	1 cut(s)	29
BseBI	CCWGG	3 cut(s)	159, 687, 806
BseDI	CCNNGG	3 cut(s)	76, 1179, 1373
BseGI	GGATG	2 cut(s)	26, 1359
BseJI	GATNNNNATC	2 cut(s)	54, 667
BseLI	CCNNNNNNNGG	7 cut(s)	15, 92, 467, 975, 1046, 1122, 1354
BseMII	CTCAG	2 cut(s)	204, 957
BseNI	ACTGG	1 cut(s)	490
BseXI	GCAGC	3 cut(s)	148, 166, 934
BseYI	CCCAGC	1 cut(s)	593
BsgI	GTGCAG	3 cut(s)	171, 933, 1231
BsiHKAI	GWGCWC	3 cut(s)	128, 545, 1303
BsiHKCI	CYCGRG	1 cut(s)	1373
BsiSI	CCGG	4 cut(s)	30, 546, 1046, 1374
BslI	CCNNNNNNNGG	7 cut(s)	15, 92, 467, 975, 1046, 1122, 1354
BsmAI	GTCTC	2 cut(s)	136, 1087
BsmI	GAATGC	1 cut(s)	394
Bso31I	GGTCTC	1 cut(s)	136
BsoBI	CYCGRG	1 cut(s)	1373
Bsp119I	TTCGAA	2 cut(s)	626, 812
Bsp1286I	GDGCHC	3 cut(s)	128, 545, 1303
Bsp13I	TCCGGA	1 cut(s)	29
BspACI	CCGC	4 cut(s)	395, 759, 1037, 1405
BspCNI	CTCAG	2 cut(s)	205, 956
BspEI	TCCGGA	1 cut(s)	29
BspLI	GGNNCC	2 cut(s)	315, 1009
BspMI	ACCTGC	2 cut(s)	154, 193
BspQI	GCTCTTC	1 cut(s)	95
BspT104I	TTCGAA	2 cut(s)	626, 812
BspTNI	GGTCTC	1 cut(s)	136
BsrI	ACTGG	1 cut(s)	490
BssECI	CCNNGG	3 cut(s)	76, 1179, 1373
BssSI	CACGAG	1 cut(s)	538
BssT1I	CCWWGG	1 cut(s)	76
Bst2BI	CACGAG	1 cut(s)	538
Bst2UI	CCWGG	3 cut(s)	159, 687, 806
Bst4CI	ACNGT	4 cut(s)	755, 998, 1305, 1399
Bst6I	CTCTTC	2 cut(s)	14, 95
BstBI	TTCGAA	2 cut(s)	626, 812
BstDEI	CTNAG	4 cut(s)	213, 943, 1068, 1349
BstF5I	GGATG	2 cut(s)	26, 1359
BstMAI	GTCTC	2 cut(s)	136, 1087
BstMWI	GCNNNNNNNGC	3 cut(s)	163, 1064, 1175
BstNI	CCWGG	3 cut(s)	159, 687, 806
BstSCI	CCNGG	6 cut(s)	157, 685, 804, 1045, 1372, 1373
BstSFI	CTRYAG	1 cut(s)	1236
BstV1I	GCAGC	3 cut(s)	148, 166, 934
BstV2I	GAAGAC	2 cut(s)	611, 1350
BstX2I	RGATCY	1 cut(s)	313
BstYI	RGATCY	1 cut(s)	313
Bsu36I	CCTNAGG	1 cut(s)	1349
BtrI	CACGTC	1 cut(s)	264
BtsCI	GGATG	2 cut(s)	26, 1359
BtsIMutI	CAGTG	2 cut(s)	760, 1301
BveI	ACCTGC	2 cut(s)	154, 193
Cfr13I	GGNCC	3 cut(s)	227, 572, 884
Cfr9I	CCCGGG	1 cut(s)	1373
CseI	GACGC	1 cut(s)	184
Csp6I	GTAC	3 cut(s)	201, 1256, 1395
CspCI	CAANNNNNGTGG	2 cut(s)	1003, 1038
CviAII	CATG	2 cut(s)	254, 1318
CviQI	GTAC	3 cut(s)	201, 1256, 1395
DdeI	CTNAG	4 cut(s)	213, 943, 1068, 1349
DraIII	CACNNNGTG	1 cut(s)	1049
DrdI	GACNNNNNNGTC	1 cut(s)	268
DseDI	GACNNNNNNGTC	1 cut(s)	268
Eam1104I	CTCTTC	2 cut(s)	14, 95
EarI	CTCTTC	2 cut(s)	14, 95
Ecl136II	GAGCTC	2 cut(s)	126, 543
Eco130I	CCWWGG	1 cut(s)	76
Eco24I	GRGCYC	2 cut(s)	128, 545
Eco31I	GGTCTC	1 cut(s)	136
Eco47I	GGWCC	3 cut(s)	227, 572, 884
Eco53kI	GAGCTC	2 cut(s)	126, 543
Eco57I	CTGAAG	2 cut(s)	393, 1362
Eco81I	CCTNAGG	1 cut(s)	1349
Eco88I	CYCGRG	1 cut(s)	1373
EcoICRI	GAGCTC	2 cut(s)	126, 543
EcoO109I	RGGNCCY	1 cut(s)	572
EcoRI	GAATTC	2 cut(s)	4, 130
EcoRII	CCWGG	3 cut(s)	157, 685, 804
EcoT14I	CCWWGG	1 cut(s)	76
EcoT38I	GRGCYC	2 cut(s)	128, 545
ErhI	CCWWGG	1 cut(s)	76
FaeI	CATG	2 cut(s)	257, 1321
FatI	CATG	2 cut(s)	253, 1317
FbaI	TGATCA	1 cut(s)	1261
FblI	GTMKAC	1 cut(s)	82
Fnu4HI	GCNGC	3 cut(s)	137, 155, 948
FokI	GGATG	2 cut(s)	13, 1366
FriOI	GRGCYC	2 cut(s)	128, 545
Fsp4HI	GCNGC	3 cut(s)	137, 155, 948
FspBI	CTAG	3 cut(s)	318, 366, 1389
GluI	GCNGC	3 cut(s)	137, 155, 948
GsaI	CCCAGC	1 cut(s)	597
HapII	CCGG	4 cut(s)	30, 546, 1046, 1374
HgaI	GACGC	1 cut(s)	184
Hin1II	CATG	2 cut(s)	257, 1321
HincII	GTYRAC	1 cut(s)	697
HindII	GTYRAC	1 cut(s)	697
HinfI	GANTC	4 cut(s)	424, 452, 1141, 1383
HpaI	GTTAAC	1 cut(s)	697
HpaII	CCGG	4 cut(s)	30, 546, 1046, 1374
HphI	GGTGA	4 cut(s)	257, 461, 1172, 1394
Hpy166II	GTNNAC	6 cut(s)	83, 174, 227, 697, 887, 1402
Hpy188I	TCNGA	8 cut(s)	90, 99, 209, 214, 221, 516, 662, 1337
Hpy188III	TCNNGA	6 cut(s)	16, 30, 279, 675, 834, 1265
Hpy8I	GTNNAC	6 cut(s)	83, 174, 227, 697, 887, 1402
Hpy99I	CGWCG	1 cut(s)	172
HpyAV	CCTTC	2 cut(s)	585, 633
HpyCH4III	ACNGT	4 cut(s)	755, 998, 1305, 1399
HpyCH4IV	ACGT	3 cut(s)	263, 375, 858
HpyCH4V	TGCA	7 cut(s)	188, 392, 707, 874, 902, 950, 1248
HpyF10VI	GCNNNNNNNGC	3 cut(s)	163, 1064, 1175
HpyF3I	CTNAG	4 cut(s)	213, 943, 1068, 1349
HpySE526I	ACGT	3 cut(s)	263, 375, 858
Hsp92II	CATG	2 cut(s)	257, 1321
Kpn2I	TCCGGA	1 cut(s)	29
Ksp22I	TGATCA	1 cut(s)	1261
KspAI	GTTAAC	1 cut(s)	697
LguI	GCTCTTC	1 cut(s)	95
LmnI	GCTCC	2 cut(s)	548, 1337
Lsp1109I	GCAGC	3 cut(s)	148, 166, 934
LweI	GCATC	2 cut(s)	187, 1102
MaeI	CTAG	3 cut(s)	318, 366, 1389
MaeII	ACGT	3 cut(s)	263, 375, 858
MaeIII	GTNAC	3 cut(s)	533, 1205, 1279
MboII	GAAGA	9 cut(s)	31, 105, 112, 397, 611, 885, 983, 1285, 1355
MflI	RGATCY	1 cut(s)	313
MhlI	GDGCHC	3 cut(s)	128, 545, 1303
MluCI	AATT	6 cut(s)	4, 130, 442, 472, 727, 931
MlyI	GAGTC	1 cut(s)	433
MmeI	TCCRAC	2 cut(s)	33, 1198
MnlI	CCTC	6 cut(s)	96, 563, 830, 952, 1050, 1174
MroI	TCCGGA	1 cut(s)	29
MseI	TTAA	3 cut(s)	555, 696, 750
MspA1I	CMGCKG	1 cut(s)	947
MspI	CCGG	4 cut(s)	30, 546, 1046, 1374
MspR9I	CCNGG	6 cut(s)	159, 687, 806, 1047, 1374, 1375
Mva1269I	GAATGC	1 cut(s)	394
MvaI	CCWGG	3 cut(s)	159, 687, 806
MwoI	GCNNNNNNNGC	3 cut(s)	163, 1064, 1175
NciI	CCSGG	3 cut(s)	1047, 1374, 1375
NlaIII	CATG	2 cut(s)	257, 1321
NlaIV	GGNNCC	2 cut(s)	315, 1009
NmeAIII	GCCGAG	2 cut(s)	165, 1204
NmuCI	GTSAC	1 cut(s)	1279
NspV	TTCGAA	2 cut(s)	626, 812
PciSI	GCTCTTC	1 cut(s)	95
PctI	GAATGC	1 cut(s)	394
PfeI	GAWTC	3 cut(s)	452, 1141, 1383
PflFI	GACNNNGTC	1 cut(s)	1098
PflMI	CCANNNNNTGG	1 cut(s)	1122
PkrI	GCNGC	3 cut(s)	138, 156, 949
PleI	GAGTC	1 cut(s)	432
PpsI	GAGTC	1 cut(s)	432
PpuMI	RGGWCCY	1 cut(s)	572
Psp124BI	GAGCTC	2 cut(s)	128, 545
Psp1406I	AACGTT	1 cut(s)	858
Psp5II	RGGWCCY	1 cut(s)	572
Psp6I	CCWGG	3 cut(s)	157, 685, 804
PspFI	CCCAGC	1 cut(s)	593
PspGI	CCWGG	3 cut(s)	157, 685, 804
PspN4I	GGNNCC	2 cut(s)	315, 1009
PspPI	GGNCC	3 cut(s)	227, 572, 884
PspPPI	RGGWCCY	1 cut(s)	572
PsuI	RGATCY	1 cut(s)	313
PsyI	GACNNNGTC	1 cut(s)	1098
PvuII	CAGCTG	1 cut(s)	947
RsaI	GTAC	3 cut(s)	202, 1257, 1396
RsaNI	GTAC	3 cut(s)	201, 1256, 1395
SacI	GAGCTC	2 cut(s)	128, 545
SapI	GCTCTTC	1 cut(s)	95
SaqAI	TTAA	3 cut(s)	555, 696, 750
SatI	GCNGC	3 cut(s)	137, 155, 948
Sau96I	GGNCC	3 cut(s)	227, 572, 884
ScaI	AGTACT	1 cut(s)	1396
SchI	GAGTC	1 cut(s)	433
ScrFI	CCNGG	6 cut(s)	159, 687, 806, 1047, 1374, 1375
SduI	GDGCHC	3 cut(s)	128, 545, 1303
SfaNI	GCATC	2 cut(s)	187, 1102
SfcI	CTRYAG	1 cut(s)	1236
SfuI	TTCGAA	2 cut(s)	626, 812
SinI	GGWCC	3 cut(s)	227, 572, 884
SmaI	CCCGGG	1 cut(s)	1375
Sse9I	AATT	6 cut(s)	4, 130, 442, 472, 727, 931
SsiI	CCGC	4 cut(s)	395, 759, 1037, 1405
SspMI	CTAG	3 cut(s)	318, 366, 1389
SstI	GAGCTC	2 cut(s)	128, 545
StyD4I	CCNGG	6 cut(s)	157, 685, 804, 1045, 1372, 1373
StyI	CCWWGG	1 cut(s)	76
TaaI	ACNGT	4 cut(s)	755, 998, 1305, 1399
TaiI	ACGT	3 cut(s)	266, 378, 861
TaqII	GACCGA	2 cut(s)	244, 983
TasI	AATT	6 cut(s)	4, 130, 442, 472, 727, 931
TatI	WGTACW	1 cut(s)	1394
TfiI	GAWTC	3 cut(s)	452, 1141, 1383
Tru1I	TTAA	3 cut(s)	555, 696, 750
Tru9I	TTAA	3 cut(s)	555, 696, 750
TscAI	CASTG	2 cut(s)	760, 1308
TseFI	GTSAC	1 cut(s)	1279
TseI	GCWGC	3 cut(s)	136, 154, 947
Tsp45I	GTSAC	1 cut(s)	1279
TspDTI	ATGAA	5 cut(s)	17, 242, 494, 596, 1179
TspMI	CCCGGG	1 cut(s)	1373
TspRI	CASTG	2 cut(s)	760, 1308
Tth111I	GACNNNGTC	1 cut(s)	1098
Van91I	CCANNNNNTGG	1 cut(s)	1122
VpaK11BI	GGWCC	3 cut(s)	227, 572, 884
XapI	RAATTY	4 cut(s)	4, 130, 442, 727
XmaI	CCCGGG	1 cut(s)	1373
XmiI	GTMKAC	1 cut(s)	82
XspI	CTAG	3 cut(s)	318, 366, 1389
ZrmI	AGTACT	1 cut(s)	1396

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.