pycom13g13930

cellular component assembly

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr13
Physical Location & Seq
Reverse (-)
9914222 .. 9916362
2141 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom13g13930.2

Sequence Viewer

Length: 1479 bp
ATGAATTCCAACTTCGACTTCGATCTGGGTCTCGGATCCAGCCGACCCAAATCGCTCAACGACCAGAAGAACAAGACCTCTTCTTTCACCACCTCCGCCACCGCCGCCCAATCCCGACCCACCTGGCAACAACCCACCGCCAGTAGAACCACCTCCTGGACCCACCAGCCGGCTCCGACCCAGAGCGCCCGACCCGGATTGACCAACGCCCCGACTTCCATGGTCGGGGATATCTTCGGAAAGAGCTGGACTTCCGCGGCTCCGGCGGTTTCCGCCACCCCGATCGCCGTCGTCAATAAAAACCCAAATTTGTTTGGGGATTTGGTCAGTTCCGCCATGGGTGGTAAGATCAATAGTAATAGCAATGTTCCGTTGAAGAATGCAACCCCGGCTTCGAATAAGAGCTCGTTTTCCATGGGGAACGTGGCCGATTCGTTGCCCAAAACCACCACTGCTGCTAGTAATAGTTCGGGGAAAATTGGTGGTGCAAATTATGGTGCTTCTGGGAATTTTGGGAGTTTCTCTGGTGGGTTTAATAGCAATGCTAATAAGGTTAATAGTGGTGTTAACGCTAATAGTAATAAGAGTGCGAATCTTGGAGGTCCTTCGCTGCAAAATATGGGCAGTGCTAGTGTTGGTGGCGGTGGATTGAGCTCTAAGAAAGACCCTTTTGGTTCTTTGGTGGATCTCGCATCAAAACCATCTGCTACTATTAACACAGCGAGTAAAAATAGTGATCAAAGTAGTGTTGGTGATGCTTTTGGAGATTTTCAGAATGCTCCGAAACCAAGCACCACCAATACTACATTCGCCTCGAGTGCCTTCCCAGATAGCAGTTTTATGGGATCAGATTCGGATTCTGGCTTTGGGGATTTTGGGGTTTCGGTGAAGCCAACCCCTGCTCAGTCTGCTAGCAATGATCCCTTCGGCGTGTTGTTTACCCCATCTTCAGGTTCGGCTGGAGGTGCTGCAACAGCAAATAATGGTGTTGGAATGCAGCAATCCTCTGAAGTTGATGGTTGGGGGACAGAGTTTGGGGGAGGACATGATGATGGTGGTTCGACAACTGAGCTTGAGGGTCTTCCACCTCCTCCTGCTGGGGTGTCAGCCTCAACAGCAAAGAATAAGGGAATGGATAATTACAAGCAAGGGCAGTATCCTGATGCTATTAAGTGGCTTTCTTGGGCTGTTATTCTTCTTGAGAAATCGGCTGATAATGCTGGCGTTGCAGATGTCTTGTCAAGCAGGGCTTCATGTTACAAAGAAGTAGGGGAGTATAAGAAAGCTGTGGCAGACTGCACAAAGGTTCTTGATAAAGATGAAGCAAATGTATCTGTTCTGGTACAGCGTGCGCTCTTGTACGAAAGTATGGAAAAGTACAGACTTGGGGCAGAAGATCTTAGGACTGCTCTGAAGTTTGATCCTGGTAACAGGGTTGCAAGAAGCACCATTCACCGCTTGCAGAAATTGGCAGACTAG

Protein Analysis

493

Amino Acids

50.44

Weight (kDa)

8.29

Isoelectric Point (pI)

36.15

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 156
AccII CGCG 1 cut(s) 257
AclWI GGATC 6 cut(s) 30, 43, 693, 853, 914, 1415
AcoI YGGCCR 1 cut(s) 426
AcsI RAATTY 3 cut(s) 4, 307, 508
AcuI CTGAAG 3 cut(s) 933, 1029, 1433
AfaI GTAC 3 cut(s) 1344, 1361, 1379
AfiI CCNNNNNNNGG 5 cut(s) 156, 169, 225, 950, 1097
AgsI TTSAA 1 cut(s) 376
AjnI CCWGG 3 cut(s) 122, 155, 1423
AjuI GAANNNNNNNTTGG 3 cut(s) 34, 791, 823
AluBI AGCT 5 cut(s) 246, 405, 654, 1072, 1286
AluI AGCT 5 cut(s) 246, 405, 654, 1072, 1286
Alw21I GWGCWC 2 cut(s) 407, 656
Alw26I GTCTC 1 cut(s) 35
AlwI GGATC 6 cut(s) 30, 43, 693, 853, 914, 1415
Ama87I CYCGRG 1 cut(s) 814
AoxI GGCC 1 cut(s) 426
ApeKI GCWGC 4 cut(s) 455, 610, 968, 997
ApoI RAATTY 3 cut(s) 4, 307, 508
AspLEI GCGC 2 cut(s) 188, 1354
AspS9I GGNCC 2 cut(s) 159, 602
AsuC2I CCSGG 2 cut(s) 195, 389
AsuHPI GGTGA 4 cut(s) 79, 764, 898, 1445
AsuII TTCGAA 1 cut(s) 395
AsuNHI GCTAGC 1 cut(s) 911
AvaI CYCGRG 1 cut(s) 814
AvaII GGWCC 2 cut(s) 159, 602
BamHI GGATCC 1 cut(s) 35
BanII GRGCYC 2 cut(s) 407, 656
BbsI GAAGAC 1 cut(s) 1073
Bbv12I GWGCWC 2 cut(s) 407, 656
BbvI GCAGC 4 cut(s) 442, 597, 955, 1009
BccI CCATC 4 cut(s) 709, 952, 1010, 1046
BceAI ACGGC 1 cut(s) 272
BciT130I CCWGG 3 cut(s) 124, 157, 1425
BciVI GTATCC 1 cut(s) 1167
BclI TGATCA 1 cut(s) 736
BcnI CCSGG 2 cut(s) 195, 389
BcoDI GTCTC 1 cut(s) 35
BfaI CTAG 4 cut(s) 459, 630, 912, 1477
BfoI RGCGCY 1 cut(s) 189
BfuI GTATCC 1 cut(s) 1167
BglII AGATCT 1 cut(s) 1396
BisI GCNGC 6 cut(s) 105, 258, 456, 611, 969, 998
BlsI GCNGC 6 cut(s) 106, 259, 457, 612, 970, 999
Bme1390I CCNGG 5 cut(s) 124, 157, 195, 389, 1425
Bme18I GGWCC 2 cut(s) 159, 602
BmeT110I CYCGRG 1 cut(s) 814
BmgT120I GGNCC 2 cut(s) 159, 602
BmiI GGNNCC 4 cut(s) 37, 161, 174, 261
BmrFI CCNGG 5 cut(s) 124, 157, 195, 389, 1425
BmsI GCATC 3 cut(s) 701, 745, 1153
BmtI GCTAGC 1 cut(s) 915
BpiI GAAGAC 1 cut(s) 1073
BpmI CTGGAG 1 cut(s) 981
Bpu14I TTCGAA 1 cut(s) 395
BpuEI CTTGAG 2 cut(s) 1094, 1220
BpuMI CCSGG 2 cut(s) 195, 389
BsaI GGTCTC 1 cut(s) 35
BsaJI CCNNGG 5 cut(s) 219, 255, 336, 387, 414
Bsc4I CCNNNNNNNGG 5 cut(s) 156, 169, 225, 950, 1097
Bse118I RCCGGY 1 cut(s) 169
Bse1I ACTGG 1 cut(s) 141
Bse3DI GCAATG 3 cut(s) 370, 547, 922
BseBI CCWGG 3 cut(s) 124, 157, 1425
BseDI CCNNGG 5 cut(s) 219, 255, 336, 387, 414
BseLI CCNNNNNNNGG 5 cut(s) 156, 169, 225, 950, 1097
BseMI GCAATG 3 cut(s) 370, 547, 922
BseMII CTCAG 2 cut(s) 917, 1059
BseNI ACTGG 1 cut(s) 141
BseRI GAGGAG 1 cut(s) 1080
BseXI GCAGC 4 cut(s) 442, 597, 955, 1009
BseYI CCCAGC 1 cut(s) 1097
BsgI GTGCAG 1 cut(s) 1282
Bsh1236I CGCG 1 cut(s) 257
Bsh1285I CGRYCG 1 cut(s) 285
BshFI GGCC 1 cut(s) 428
BsiEI CGRYCG 1 cut(s) 285
BsiHKAI GWGCWC 2 cut(s) 407, 656
BsiHKCI CYCGRG 1 cut(s) 814
BsiSI CCGG 4 cut(s) 170, 195, 263, 389
BslFI GGGAC 1 cut(s) 1039
BslI CCNNNNNNNGG 5 cut(s) 156, 169, 225, 950, 1097
BsmAI GTCTC 1 cut(s) 35
BsmFI GGGAC 1 cut(s) 1039
BsmI GAATGC 3 cut(s) 385, 781, 999
BsnI GGCC 1 cut(s) 428
Bso31I GGTCTC 1 cut(s) 35
BsoBI CYCGRG 1 cut(s) 814
Bsp119I TTCGAA 1 cut(s) 395
Bsp1286I GDGCHC 2 cut(s) 407, 656
Bsp19I CCATGG 3 cut(s) 219, 336, 414
BspANI GGCC 1 cut(s) 428
BspCNI CTCAG 2 cut(s) 916, 1060
BspFNI CGCG 1 cut(s) 257
BspLI GGNNCC 4 cut(s) 37, 161, 174, 261
BspOI GCTAGC 1 cut(s) 915
BspPI GGATC 6 cut(s) 30, 43, 693, 853, 914, 1415
BspT104I TTCGAA 1 cut(s) 395
BspTNI GGTCTC 1 cut(s) 35
BsrDI GCAATG 3 cut(s) 370, 547, 922
BsrFI RCCGGY 1 cut(s) 169
BsrI ACTGG 1 cut(s) 141
BssAI RCCGGY 1 cut(s) 169
BssECI CCNNGG 5 cut(s) 219, 255, 336, 387, 414
BssT1I CCWWGG 3 cut(s) 219, 336, 414
Bst2UI CCWGG 3 cut(s) 124, 157, 1425
Bst6I CTCTTC 1 cut(s) 85
BstBI TTCGAA 1 cut(s) 395
BstC8I GCNNGC 5 cut(s) 171, 913, 1222, 1350, 1460
BstDEI CTNAG 4 cut(s) 657, 903, 1068, 1400
BstDSI CCRYGG 4 cut(s) 219, 255, 336, 414
BstFNI CGCG 1 cut(s) 257
BstH2I RGCGCY 1 cut(s) 189
BstHHI GCGC 2 cut(s) 188, 1354
BstMAI GTCTC 1 cut(s) 35
BstMCI CGRYCG 1 cut(s) 285
BstNI CCWGG 3 cut(s) 124, 157, 1425
BstSCI CCNGG 5 cut(s) 122, 155, 193, 387, 1423
BstUI CGCG 1 cut(s) 257
BstV1I GCAGC 4 cut(s) 442, 597, 955, 1009
BstV2I GAAGAC 1 cut(s) 1073
BstX2I RGATCY 3 cut(s) 35, 685, 1396
BstYI RGATCY 3 cut(s) 35, 685, 1396
BsuI GTATCC 1 cut(s) 1167
BsuRI GGCC 1 cut(s) 428
BtgI CCRYGG 4 cut(s) 219, 255, 336, 414
BtsI GCAGTG 2 cut(s) 450, 631
BtsIMutI CAGTG 2 cut(s) 450, 631
Cac8I GCNNGC 5 cut(s) 171, 913, 1222, 1350, 1460
CfoI GCGC 2 cut(s) 188, 1354
Cfr10I RCCGGY 1 cut(s) 169
Cfr13I GGNCC 2 cut(s) 159, 602
Cfr42I CCGCGG 1 cut(s) 258
Csp6I GTAC 3 cut(s) 1343, 1360, 1378
CviAII CATG 5 cut(s) 220, 337, 415, 1046, 1254
CviQI GTAC 3 cut(s) 1343, 1360, 1378
DdeI CTNAG 4 cut(s) 657, 903, 1068, 1400
EaeI YGGCCR 1 cut(s) 426
Eam1104I CTCTTC 1 cut(s) 85
EarI CTCTTC 1 cut(s) 85
EciI GGCGGA 3 cut(s) 85, 262, 322
Ecl136II GAGCTC 2 cut(s) 405, 654
Eco130I CCWWGG 3 cut(s) 219, 336, 414
Eco24I GRGCYC 2 cut(s) 407, 656
Eco31I GGTCTC 1 cut(s) 35
Eco32I GATATC 1 cut(s) 232
Eco47I GGWCC 2 cut(s) 159, 602
Eco53kI GAGCTC 2 cut(s) 405, 654
Eco57I CTGAAG 3 cut(s) 933, 1029, 1433
Eco88I CYCGRG 1 cut(s) 814
EcoICRI GAGCTC 2 cut(s) 405, 654
EcoO109I RGGNCCY 1 cut(s) 602
EcoRI GAATTC 1 cut(s) 4
EcoRII CCWGG 3 cut(s) 122, 155, 1423
EcoRV GATATC 1 cut(s) 232
EcoT14I CCWWGG 3 cut(s) 219, 336, 414
EcoT38I GRGCYC 2 cut(s) 407, 656
ErhI CCWWGG 3 cut(s) 219, 336, 414
FaeI CATG 5 cut(s) 223, 340, 418, 1049, 1257
FalI AAGNNNNNCTT 2 cut(s) 1234, 1266
FaqI GGGAC 1 cut(s) 1039
FatI CATG 5 cut(s) 219, 336, 414, 1045, 1253
FbaI TGATCA 1 cut(s) 736
Fnu4HI GCNGC 6 cut(s) 105, 258, 456, 611, 969, 998
FriOI GRGCYC 2 cut(s) 407, 656
Fsp4HI GCNGC 6 cut(s) 105, 258, 456, 611, 969, 998
FspBI CTAG 4 cut(s) 459, 630, 912, 1477
GlaI GCGC 2 cut(s) 187, 1353
GluI GCNGC 6 cut(s) 105, 258, 456, 611, 969, 998
GsaI CCCAGC 1 cut(s) 1101
GsuI CTGGAG 1 cut(s) 981
HaeII RGCGCY 1 cut(s) 189
HaeIII GGCC 1 cut(s) 428
HapII CCGG 4 cut(s) 170, 195, 263, 389
HhaI GCGC 2 cut(s) 188, 1354
Hin1II CATG 5 cut(s) 223, 340, 418, 1049, 1257
Hin6I GCGC 2 cut(s) 186, 1352
HinP1I GCGC 2 cut(s) 186, 1352
HincII GTYRAC 1 cut(s) 568
HindII GTYRAC 1 cut(s) 568
HinfI GANTC 4 cut(s) 431, 592, 851, 857
HpaI GTTAAC 1 cut(s) 568
HpaII CCGG 4 cut(s) 170, 195, 263, 389
HphI GGTGA 4 cut(s) 79, 764, 898, 1445
Hpy166II GTNNAC 2 cut(s) 568, 939
Hpy188I TCNGA 9 cut(s) 35, 177, 239, 774, 783, 850, 856, 1009, 1413
Hpy188III TCNNGA 4 cut(s) 114, 1160, 1199, 1310
Hpy8I GTNNAC 2 cut(s) 568, 939
Hpy99I CGWCG 1 cut(s) 293
HpyAV CCTTC 3 cut(s) 615, 832, 934
HpyCH4IV ACGT 1 cut(s) 423
HpyCH4V TGCA 9 cut(s) 383, 488, 613, 971, 997, 1229, 1299, 1439, 1462
HpyF3I CTNAG 4 cut(s) 657, 903, 1068, 1400
HpySE526I ACGT 1 cut(s) 423
Hsp92II CATG 5 cut(s) 223, 340, 418, 1049, 1257
HspAI GCGC 2 cut(s) 186, 1352
KroI GCCGGC 1 cut(s) 169
KroNI GCCGGC 1 cut(s) 171
Ksp22I TGATCA 1 cut(s) 736
KspAI GTTAAC 1 cut(s) 568
KspI CCGCGG 1 cut(s) 258
LmnI GCTCC 3 cut(s) 178, 265, 784
Lsp1109I GCAGC 4 cut(s) 442, 597, 955, 1009
LweI GCATC 3 cut(s) 701, 745, 1153
MaeI CTAG 4 cut(s) 459, 630, 912, 1477
MaeII ACGT 1 cut(s) 423
MaeIII GTNAC 2 cut(s) 1256, 1427
MboII GAAGA 8 cut(s) 72, 79, 226, 388, 939, 1073, 1187, 1406
MflI RGATCY 3 cut(s) 35, 685, 1396
MhlI GDGCHC 2 cut(s) 407, 656
MluCI AATT 7 cut(s) 4, 307, 477, 490, 508, 1138, 1466
MmeI TCCRAC 3 cut(s) 33, 200, 970
MroNI GCCGGC 1 cut(s) 169
MseI TTAA 5 cut(s) 534, 555, 567, 714, 1170
MslI CAYNNNNRTG 1 cut(s) 1050
MspA1I CMGCKG 1 cut(s) 257
MspI CCGG 4 cut(s) 170, 195, 263, 389
MspR9I CCNGG 5 cut(s) 124, 157, 195, 389, 1425
Mva1269I GAATGC 3 cut(s) 385, 781, 999
MvaI CCWGG 3 cut(s) 124, 157, 1425
MvnI CGCG 1 cut(s) 257
NaeI GCCGGC 1 cut(s) 171
NciI CCSGG 2 cut(s) 195, 389
NcoI CCATGG 3 cut(s) 219, 336, 414
NgoMIV GCCGGC 1 cut(s) 169
NheI GCTAGC 1 cut(s) 911
NlaIII CATG 5 cut(s) 223, 340, 418, 1049, 1257
NlaIV GGNNCC 4 cut(s) 37, 161, 174, 261
NspV TTCGAA 1 cut(s) 395
PaeR7I CTCGAG 1 cut(s) 814
PctI GAATGC 3 cut(s) 385, 781, 999
PdiI GCCGGC 1 cut(s) 171
PfeI GAWTC 4 cut(s) 431, 592, 851, 857
PflMI CCANNNNNTGG 1 cut(s) 156
PfoI TCCNGGA 1 cut(s) 155
PkrI GCNGC 6 cut(s) 106, 259, 457, 612, 970, 999
Ple19I CGATCG 1 cut(s) 285
PpuMI RGGWCCY 1 cut(s) 602
Psp124BI GAGCTC 2 cut(s) 407, 656
Psp5II RGGWCCY 1 cut(s) 602
Psp6I CCWGG 3 cut(s) 122, 155, 1423
PspFI CCCAGC 1 cut(s) 1097
PspGI CCWGG 3 cut(s) 122, 155, 1423
PspN4I GGNNCC 4 cut(s) 37, 161, 174, 261
PspPI GGNCC 2 cut(s) 159, 602
PspPPI RGGWCCY 1 cut(s) 602
PspXI VCTCGAGB 1 cut(s) 814
PsuI RGATCY 3 cut(s) 35, 685, 1396
PvuI CGATCG 1 cut(s) 285
RsaI GTAC 3 cut(s) 1344, 1361, 1379
RsaNI GTAC 3 cut(s) 1343, 1360, 1378
RseI CAYNNNNRTG 1 cut(s) 1050
SacI GAGCTC 2 cut(s) 407, 656
SacII CCGCGG 1 cut(s) 258
SaqAI TTAA 5 cut(s) 534, 555, 567, 714, 1170
SatI GCNGC 6 cut(s) 105, 258, 456, 611, 969, 998
Sau96I GGNCC 2 cut(s) 159, 602
ScrFI CCNGG 5 cut(s) 124, 157, 195, 389, 1425
SduI GDGCHC 2 cut(s) 407, 656
SfaNI GCATC 3 cut(s) 701, 745, 1153
Sfr274I CTCGAG 1 cut(s) 814
Sfr303I CCGCGG 1 cut(s) 258
SfuI TTCGAA 1 cut(s) 395
SgrBI CCGCGG 1 cut(s) 258
SinI GGWCC 2 cut(s) 159, 602
SlaI CTCGAG 1 cut(s) 814
SmiMI CAYNNNNRTG 1 cut(s) 1050
SmlI CTYRAG 3 cut(s) 814, 1073, 1199
SmoI CTYRAG 3 cut(s) 814, 1073, 1199
Sse9I AATT 7 cut(s) 4, 307, 477, 490, 508, 1138, 1466
SspMI CTAG 4 cut(s) 459, 630, 912, 1477
SstI GAGCTC 2 cut(s) 407, 656
StyD4I CCNGG 5 cut(s) 122, 155, 193, 387, 1423
StyI CCWWGG 3 cut(s) 219, 336, 414
TaiI ACGT 1 cut(s) 426
TaqI TCGA 5 cut(s) 15, 21, 395, 815, 1061
TasI AATT 7 cut(s) 4, 307, 477, 490, 508, 1138, 1466
TatI WGTACW 1 cut(s) 1377
TauI GCSGC 2 cut(s) 107, 260
TfiI GAWTC 4 cut(s) 431, 592, 851, 857
Tru1I TTAA 5 cut(s) 534, 555, 567, 714, 1170
Tru9I TTAA 5 cut(s) 534, 555, 567, 714, 1170
TscAI CASTG 2 cut(s) 457, 631
TseI GCWGC 4 cut(s) 455, 610, 968, 997
TspDTI ATGAA 3 cut(s) 17, 1242, 1335
TspGWI ACGGA 1 cut(s) 360
TspRI CASTG 2 cut(s) 457, 631
Van91I CCANNNNNTGG 1 cut(s) 156
VpaK11BI GGWCC 2 cut(s) 159, 602
XapI RAATTY 3 cut(s) 4, 307, 508
XcmI CCANNNNNNNNNTGG 1 cut(s) 421
XhoI CTCGAG 1 cut(s) 814
XspI CTAG 4 cut(s) 459, 630, 912, 1477
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.