Rmu_sc0008281.1_g000006

cellular component assembly

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0008281.1
Physical Location & Seq
Reverse (-)
17911 .. 20178
2268 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0008281.1_g000006.1.cds

Sequence Viewer

Length: 1437 bp
atgaattccaacttcgatttcgatctgggtctcggatccaaccgacccagatccctcaacgaccaaaagaacaaaacttcctccttctccaccgccccgcagccatccaaacccgcctggcagcccaacaagaccacctcatggacccaccagcccgctccggcccagacgcctctcaacggcccgacttccatggtcggagatatcttcggcaagagttgggcctccaccggctcatcggtttcggccactccgattggggtcgtcaacaagaaccccaatctgttcggcgatttggtcagctctgctatgggcggtaaggttaatggtagcagcaatgttcctttaaagaatacaactcctgcttcgaataagagctcgttttcgatgggcaatgtggctgattcgttgcccaaaaccaccaccggtactagttctgtccagagtggtataaattggggtggttctggaagttctgggggtttctctagtgggtttaataatagtagtaagatcagtagtggggttaatgctaatactactaagagtccgagcctcggaggcccgtcgctgcgaaatatgggcagtgctggtggtgttggtgttggtggaggtagtggaattggttctaagaaagacccatttggttctttggttgatcttgcatcgaaaccatcgagtgggattaacacggcgagtaaaggcagcaataagagtagtaatgctccaaaaccaagtaccactactgcatctgcatttccggccagcggcttctcctcaaatggtaacagttttatggggtcggattcattttcgggctttggtgattttgggaccccggctaagcagaatcctgttcagtctaccagcagtgatccgcttgacatgttctttcccacatcctcggcttctggggctggtattgcagcagcgagtaatggagttggagtacagcaatcctctggaattgatgattgggggacggagtttggaggtggagtagatgatgtgggtggttccacaactgagcttgagggccttccacctcctccagctggggtatctgcttctgcagcaaagagtaagggaatggataattacaagcaagggcagtatccagatgctattaagtggctatcttgggctttagtgcttcttgagaaagcagctgataggtctgccctttcagacgtattgtcgagcagagcttcatgttacaaagaagtaggagagtacaagaaagcggtggcagactgcacaaaggttctagaacaagatgatgcaaacgtatctgttctcgtacagcgtgcactcttgtatgaaagtatggaaaagtacaaacttggggcagaagatttgaggagtgttctgaagattgatcccggtaacagggttgcaagaggcaccattcaccgcctgacacagttggcagactag

Protein Analysis

478

Amino Acids

48.68

Weight (kDa)

8.95

Isoelectric Point (pI)

35.88

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 1403
AccB7I CCANNNNNTGG 2 cut(s) 141, 680
AccBSI CCGCTC 1 cut(s) 158
AccI GTMKAC 1 cut(s) 863
AciI CCGC 9 cut(s) 93, 98, 114, 156, 315, 768, 878, 1244, 1414
AclWI GGATC 5 cut(s) 30, 43, 45, 869, 1373
AcoI YGGCCR 2 cut(s) 246, 762
AcsI RAATTY 1 cut(s) 4
AcuI CTGAAG 1 cut(s) 1391
AcyI GRCGYC 1 cut(s) 170
AfaI GTAC 6 cut(s) 430, 739, 951, 1235, 1302, 1337
AfiI CCNNNNNNNGG 7 cut(s) 141, 179, 557, 680, 767, 1055, 1389
AflIII ACRYGT 1 cut(s) 885
AgeI ACCGGT 1 cut(s) 425
AhdI GACNNNNNGTC 1 cut(s) 1195
AhlI ACTAGT 1 cut(s) 431
AjnI CCWGG 1 cut(s) 116
AjuI GAANNNNNNNTTGG 3 cut(s) 34, 958, 990
AloI GAACNNNNNNTCC 2 cut(s) 62, 94
AluBI AGCT 6 cut(s) 303, 378, 1030, 1055, 1169, 1208
AluI AGCT 6 cut(s) 303, 378, 1030, 1055, 1169, 1208
Alw21I GWGCWC 2 cut(s) 380, 1312
Alw26I GTCTC 1 cut(s) 35
Alw44I GTGCAC 1 cut(s) 1308
AlwI GGATC 5 cut(s) 30, 43, 45, 869, 1373
AoxI GGCC 7 cut(s) 162, 181, 222, 246, 562, 762, 1036
ApaLI GTGCAC 1 cut(s) 1308
ApeKI GCWGC 9 cut(s) 100, 121, 333, 571, 705, 926, 929, 1073, 1166
ApoI RAATTY 1 cut(s) 4
AsiGI ACCGGT 1 cut(s) 425
Asp700I GAANNNNTTC 1 cut(s) 625
AspS9I GGNCC 7 cut(s) 144, 163, 182, 222, 563, 834, 1036
AsuC2I CCSGG 2 cut(s) 839, 1383
AsuHPI GGTGA 2 cut(s) 836, 1403
AsuII TTCGAA 1 cut(s) 368
AvaII GGWCC 2 cut(s) 144, 834
BaeGI GKGCMC 1 cut(s) 1312
BamHI GGATCC 1 cut(s) 35
BanI GGYRCC 1 cut(s) 1403
BanII GRGCYC 1 cut(s) 380
Bbv12I GWGCWC 2 cut(s) 380, 1312
BbvI GCAGC 9 cut(s) 112, 133, 345, 558, 717, 938, 941, 1085, 1178
BccI CCATC 3 cut(s) 112, 382, 682
BceAI ACGGC 2 cut(s) 196, 708
BciT130I CCWGG 1 cut(s) 118
BciVI GTATCC 1 cut(s) 1125
BcnI CCSGG 2 cut(s) 839, 1383
BcoDI GTCTC 1 cut(s) 35
BcuI ACTAGT 1 cut(s) 431
BfaI CTAG 4 cut(s) 432, 489, 1268, 1435
BfmI CTRYAG 1 cut(s) 1071
BfuI GTATCC 1 cut(s) 1125
BglI GCCNNNNNGGC 1 cut(s) 561
BlpI GCTNAGC 1 cut(s) 843
Bme1390I CCNGG 3 cut(s) 118, 839, 1383
Bme18I GGWCC 2 cut(s) 144, 834
BmeRI GACNNNNNGTC 1 cut(s) 1195
BmgT120I GGNCC 7 cut(s) 144, 163, 182, 222, 563, 834, 1036
BmiI GGNNCC 6 cut(s) 37, 146, 835, 836, 1018, 1405
BmrFI CCNGG 3 cut(s) 118, 839, 1383
BmsI GCATC 4 cut(s) 674, 758, 1111, 1270
BpmI CTGGAG 1 cut(s) 1035
Bpu1102I GCTNAGC 1 cut(s) 843
Bpu14I TTCGAA 1 cut(s) 368
BpuEI CTTGAG 2 cut(s) 1052, 1178
BpuMI CCSGG 2 cut(s) 839, 1383
BsaBI GATNNNNATC 1 cut(s) 21
BsaHI GRCGYC 1 cut(s) 170
BsaI GGTCTC 1 cut(s) 35
BsaJI CCNNGG 4 cut(s) 192, 556, 837, 903
BsaWI WCCGGW 1 cut(s) 425
BsaXI ACNNNNNCTCC 4 cut(s) 933, 963, 984, 1014
Bsc4I CCNNNNNNNGG 7 cut(s) 141, 179, 557, 680, 767, 1055, 1389
Bse118I RCCGGY 2 cut(s) 230, 425
Bse3DI GCAATG 2 cut(s) 343, 400
Bse8I GATNNNNATC 1 cut(s) 21
BseBI CCWGG 1 cut(s) 118
BseDI CCNNGG 4 cut(s) 192, 556, 837, 903
BseGI GGATG 2 cut(s) 104, 899
BseJI GATNNNNATC 1 cut(s) 21
BseLI CCNNNNNNNGG 7 cut(s) 141, 179, 557, 680, 767, 1055, 1389
BseMI GCAATG 2 cut(s) 343, 400
BseMII CTCAG 1 cut(s) 1017
BseRI GAGGAG 3 cut(s) 766, 1038, 1375
BseSI GKGCMC 1 cut(s) 1312
BseXI GCAGC 9 cut(s) 112, 133, 345, 558, 717, 938, 941, 1085, 1178
BseYI CCCAGC 1 cut(s) 1055
BsgI GTGCAG 1 cut(s) 1240
BshFI GGCC 7 cut(s) 164, 183, 224, 248, 564, 764, 1038
BshNI GGYRCC 1 cut(s) 1403
BshTI ACCGGT 1 cut(s) 425
BsiHKAI GWGCWC 2 cut(s) 380, 1312
BsiSI CCGG 6 cut(s) 161, 231, 426, 761, 839, 1383
BslFI GGGAC 2 cut(s) 847, 994
BslI CCNNNNNNNGG 7 cut(s) 141, 179, 557, 680, 767, 1055, 1389
BsmAI GTCTC 1 cut(s) 35
BsmFI GGGAC 2 cut(s) 847, 994
BsnI GGCC 7 cut(s) 164, 183, 224, 248, 564, 764, 1038
Bso31I GGTCTC 1 cut(s) 35
Bsp119I TTCGAA 1 cut(s) 368
Bsp1286I GDGCHC 2 cut(s) 380, 1312
Bsp143I GATC 7 cut(s) 22, 35, 50, 513, 658, 874, 1378
Bsp1720I GCTNAGC 1 cut(s) 843
Bsp19I CCATGG 1 cut(s) 192
BspACI CCGC 9 cut(s) 93, 98, 114, 156, 315, 768, 878, 1244, 1414
BspANI GGCC 7 cut(s) 164, 183, 224, 248, 564, 764, 1038
BspCNI CTCAG 1 cut(s) 1018
BspLI GGNNCC 6 cut(s) 37, 146, 835, 836, 1018, 1405
BspMAI CTGCAG 1 cut(s) 1075
BspPI GGATC 5 cut(s) 30, 43, 45, 869, 1373
BspT104I TTCGAA 1 cut(s) 368
BspT107I GGYRCC 1 cut(s) 1403
BspTNI GGTCTC 1 cut(s) 35
BsrBI CCGCTC 1 cut(s) 158
BsrDI GCAATG 2 cut(s) 343, 400
BsrFI RCCGGY 2 cut(s) 230, 425
BssAI RCCGGY 2 cut(s) 230, 425
BssECI CCNNGG 4 cut(s) 192, 556, 837, 903
BssMI GATC 7 cut(s) 22, 35, 50, 513, 658, 874, 1378
BssNI GRCGYC 1 cut(s) 170
BssT1I CCWWGG 1 cut(s) 192
Bst2UI CCWGG 1 cut(s) 118
Bst4CI ACNGT 2 cut(s) 791, 1425
BstACI GRCGYC 1 cut(s) 170
BstBI TTCGAA 1 cut(s) 368
BstC8I GCNNGC 3 cut(s) 156, 766, 1308
BstDEI CTNAG 4 cut(s) 543, 630, 843, 1026
BstDSI CCRYGG 1 cut(s) 192
BstF5I GGATG 2 cut(s) 104, 899
BstKTI GATC 7 cut(s) 25, 38, 53, 516, 661, 877, 1381
BstMAI GTCTC 1 cut(s) 35
BstMBI GATC 7 cut(s) 22, 35, 50, 513, 658, 874, 1378
BstMWI GCNNNNNNNGC 5 cut(s) 561, 761, 914, 923, 1073
BstNI CCWGG 1 cut(s) 118
BstNSI RCATGY 1 cut(s) 889
BstSCI CCNGG 3 cut(s) 116, 837, 1381
BstSFI CTRYAG 1 cut(s) 1071
BstSLI GKGCMC 1 cut(s) 1312
BstV1I GCAGC 9 cut(s) 112, 133, 345, 558, 717, 938, 941, 1085, 1178
BstX2I RGATCY 2 cut(s) 35, 50
BstYI RGATCY 2 cut(s) 35, 50
BsuI GTATCC 1 cut(s) 1125
BsuRI GGCC 7 cut(s) 164, 183, 224, 248, 564, 764, 1038
BtgI CCRYGG 1 cut(s) 192
BtsCI GGATG 2 cut(s) 104, 899
BtsI GCAGTG 2 cut(s) 592, 877
BtsIMutI CAGTG 2 cut(s) 592, 877
Cac8I GCNNGC 3 cut(s) 156, 766, 1308
Cfr10I RCCGGY 2 cut(s) 230, 425
Cfr13I GGNCC 7 cut(s) 144, 163, 182, 222, 563, 834, 1036
CseI GACGC 1 cut(s) 178
Csp6I GTAC 6 cut(s) 429, 738, 950, 1234, 1301, 1336
CspAI ACCGGT 1 cut(s) 425
CspCI CAANNNNNGTGG 2 cut(s) 238, 273
CviAII CATG 4 cut(s) 141, 193, 886, 1212
CviQI GTAC 6 cut(s) 429, 738, 950, 1234, 1301, 1336
DdeI CTNAG 4 cut(s) 543, 630, 843, 1026
DpnI GATC 7 cut(s) 24, 37, 52, 515, 660, 876, 1380
DpnII GATC 7 cut(s) 22, 35, 50, 513, 658, 874, 1378
DraI TTTAAA 1 cut(s) 348
DriI GACNNNNNGTC 1 cut(s) 1195
EaeI YGGCCR 2 cut(s) 246, 762
Eam1105I GACNNNNNGTC 1 cut(s) 1195
Ecl136II GAGCTC 1 cut(s) 378
Eco130I CCWWGG 1 cut(s) 192
Eco24I GRGCYC 1 cut(s) 380
Eco31I GGTCTC 1 cut(s) 35
Eco32I GATATC 1 cut(s) 205
Eco47I GGWCC 2 cut(s) 144, 834
Eco53kI GAGCTC 1 cut(s) 378
Eco57I CTGAAG 1 cut(s) 1391
EcoICRI GAGCTC 1 cut(s) 378
EcoO109I RGGNCCY 2 cut(s) 834, 1036
EcoRI GAATTC 1 cut(s) 4
EcoRII CCWGG 1 cut(s) 116
EcoRV GATATC 1 cut(s) 205
EcoT14I CCWWGG 1 cut(s) 192
EcoT38I GRGCYC 1 cut(s) 380
ErhI CCWWGG 1 cut(s) 192
FaeI CATG 4 cut(s) 144, 196, 889, 1215
FaqI GGGAC 2 cut(s) 847, 994
FatI CATG 4 cut(s) 140, 192, 885, 1211
FauI CCCGC 3 cut(s) 105, 121, 163
FblI GTMKAC 1 cut(s) 863
FokI GGATG 2 cut(s) 91, 886
FriOI GRGCYC 1 cut(s) 380
FspBI CTAG 4 cut(s) 432, 489, 1268, 1435
GsaI CCCAGC 1 cut(s) 1059
GsuI CTGGAG 1 cut(s) 1035
HaeIII GGCC 7 cut(s) 164, 183, 224, 248, 564, 764, 1038
HapII CCGG 6 cut(s) 161, 231, 426, 761, 839, 1383
HgaI GACGC 1 cut(s) 178
Hin1I GRCGYC 1 cut(s) 170
Hin1II CATG 4 cut(s) 144, 196, 889, 1215
HincII GTYRAC 1 cut(s) 268
HindII GTYRAC 1 cut(s) 268
HinfI GANTC 4 cut(s) 404, 547, 806, 850
HpaII CCGG 6 cut(s) 161, 231, 426, 761, 839, 1383
HphI GGTGA 2 cut(s) 836, 1403
Hpy166II GTNNAC 3 cut(s) 268, 864, 1310
Hpy188I TCNGA 8 cut(s) 35, 200, 255, 552, 560, 805, 1189, 1371
Hpy188III TCNNGA 6 cut(s) 442, 468, 963, 1118, 1157, 1268
Hpy8I GTNNAC 3 cut(s) 268, 864, 1310
Hpy99I CGWCG 1 cut(s) 571
HpyAV CCTTC 2 cut(s) 94, 1049
HpyCH4III ACNGT 2 cut(s) 791, 1425
HpyCH4IV ACGT 2 cut(s) 1191, 1287
HpyCH4V TGCA 9 cut(s) 665, 749, 755, 926, 1073, 1257, 1283, 1310, 1397
HpyF10VI GCNNNNNNNGC 5 cut(s) 561, 761, 914, 923, 1073
HpyF3I CTNAG 4 cut(s) 543, 630, 843, 1026
HpySE526I ACGT 2 cut(s) 1191, 1287
Hsp92I GRCGYC 1 cut(s) 170
Hsp92II CATG 4 cut(s) 144, 196, 889, 1215
KflI GGGWCCC 1 cut(s) 834
Kzo9I GATC 7 cut(s) 22, 35, 50, 513, 658, 874, 1378
LmnI GCTCC 2 cut(s) 163, 730
Lsp1109I GCAGC 9 cut(s) 112, 133, 345, 558, 717, 938, 941, 1085, 1178
LweI GCATC 4 cut(s) 674, 758, 1111, 1270
MaeI CTAG 4 cut(s) 432, 489, 1268, 1435
MaeII ACGT 2 cut(s) 1191, 1287
MaeIII GTNAC 3 cut(s) 785, 1214, 1385
MalI GATC 7 cut(s) 24, 37, 52, 515, 660, 876, 1380
MbiI CCGCTC 1 cut(s) 158
MboI GATC 7 cut(s) 22, 35, 50, 513, 658, 874, 1378
MboII GAAGA 3 cut(s) 199, 1364, 1384
MflI RGATCY 2 cut(s) 35, 50
MhlI GDGCHC 2 cut(s) 380, 1312
MluCI AATT 5 cut(s) 4, 454, 621, 966, 1096
MlyI GAGTC 1 cut(s) 556
MmeI TCCRAC 5 cut(s) 33, 63, 178, 783, 925
MroXI GAANNNNTTC 1 cut(s) 625
MseI TTAA 6 cut(s) 324, 347, 498, 528, 687, 1128
MspA1I CMGCKG 3 cut(s) 768, 1055, 1169
MspI CCGG 6 cut(s) 161, 231, 426, 761, 839, 1383
MspR9I CCNGG 3 cut(s) 118, 839, 1383
MvaI CCWGG 1 cut(s) 118
MwoI GCNNNNNNNGC 5 cut(s) 561, 761, 914, 923, 1073
NciI CCSGG 2 cut(s) 839, 1383
NcoI CCATGG 1 cut(s) 192
NdeII GATC 7 cut(s) 22, 35, 50, 513, 658, 874, 1378
NlaIII CATG 4 cut(s) 144, 196, 889, 1215
NlaIV GGNNCC 6 cut(s) 37, 146, 835, 836, 1018, 1405
NmeAIII GCCGAG 1 cut(s) 884
NspI RCATGY 1 cut(s) 889
NspV TTCGAA 1 cut(s) 368
PciI ACATGT 1 cut(s) 885
PcsI WCGNNNNNNNCGW 2 cut(s) 251, 674
PdmI GAANNNNTTC 1 cut(s) 625
PfeI GAWTC 3 cut(s) 404, 806, 850
PflMI CCANNNNNTGG 2 cut(s) 141, 680
PinAI ACCGGT 1 cut(s) 425
PleI GAGTC 1 cut(s) 555
PpsI GAGTC 1 cut(s) 555
PpuMI RGGWCCY 1 cut(s) 834
PscI ACATGT 1 cut(s) 885
Psp124BI GAGCTC 1 cut(s) 380
Psp5II RGGWCCY 1 cut(s) 834
Psp6I CCWGG 1 cut(s) 116
PspFI CCCAGC 1 cut(s) 1055
PspGI CCWGG 1 cut(s) 116
PspN4I GGNNCC 6 cut(s) 37, 146, 835, 836, 1018, 1405
PspPI GGNCC 7 cut(s) 144, 163, 182, 222, 563, 834, 1036
PspPPI RGGWCCY 1 cut(s) 834
PstI CTGCAG 1 cut(s) 1075
PsuI RGATCY 2 cut(s) 35, 50
PvuII CAGCTG 2 cut(s) 1055, 1169
RsaI GTAC 6 cut(s) 430, 739, 951, 1235, 1302, 1337
RsaNI GTAC 6 cut(s) 429, 738, 950, 1234, 1301, 1336
SacI GAGCTC 1 cut(s) 380
SaqAI TTAA 6 cut(s) 324, 347, 498, 528, 687, 1128
Sau3AI GATC 7 cut(s) 22, 35, 50, 513, 658, 874, 1378
Sau96I GGNCC 7 cut(s) 144, 163, 182, 222, 563, 834, 1036
SchI GAGTC 1 cut(s) 556
ScrFI CCNGG 3 cut(s) 118, 839, 1383
SduI GDGCHC 2 cut(s) 380, 1312
SfaNI GCATC 4 cut(s) 674, 758, 1111, 1270
SfcI CTRYAG 1 cut(s) 1071
SfuI TTCGAA 1 cut(s) 368
SinI GGWCC 2 cut(s) 144, 834
SmlI CTYRAG 2 cut(s) 1031, 1157
SmoI CTYRAG 2 cut(s) 1031, 1157
SpeI ACTAGT 1 cut(s) 431
Sse9I AATT 5 cut(s) 4, 454, 621, 966, 1096
SsiI CCGC 9 cut(s) 93, 98, 114, 156, 315, 768, 878, 1244, 1414
SspMI CTAG 4 cut(s) 432, 489, 1268, 1435
SstI GAGCTC 1 cut(s) 380
StyD4I CCNGG 3 cut(s) 116, 837, 1381
StyI CCWWGG 1 cut(s) 192
TaaI ACNGT 2 cut(s) 791, 1425
TaiI ACGT 2 cut(s) 1194, 1290
TaqI TCGA 7 cut(s) 15, 21, 368, 386, 668, 677, 1199
TasI AATT 5 cut(s) 4, 454, 621, 966, 1096
TatI WGTACW 3 cut(s) 949, 1233, 1335
TauI GCSGC 1 cut(s) 771
TfiI GAWTC 3 cut(s) 404, 806, 850
Tru1I TTAA 6 cut(s) 324, 347, 498, 528, 687, 1128
Tru9I TTAA 6 cut(s) 324, 347, 498, 528, 687, 1128
TscAI CASTG 2 cut(s) 592, 877
TseI GCWGC 9 cut(s) 100, 121, 333, 571, 705, 926, 929, 1073, 1166
TspDTI ATGAA 4 cut(s) 17, 798, 1200, 1335
TspGWI ACGGA 1 cut(s) 998
TspRI CASTG 2 cut(s) 592, 877
Van91I CCANNNNNTGG 2 cut(s) 141, 680
VneI GTGCAC 1 cut(s) 1308
VpaK11BI GGWCC 2 cut(s) 144, 834
XapI RAATTY 1 cut(s) 4
XbaI TCTAGA 1 cut(s) 1267
XceI RCATGY 1 cut(s) 889
XmiI GTMKAC 1 cut(s) 863
XmnI GAANNNNTTC 1 cut(s) 625
XspI CTAG 4 cut(s) 432, 489, 1268, 1435
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.