MD16G1163000.v1.1

cellular component assembly

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr16
Physical Location & Seq
Reverse (-)
13353096 .. 13355692
2597 bp
Loading structure...
UTR
Exon/CDS
Intron
MD16G1163000.v1.1.491

Sequence Viewer

Length: 1476 bp
ATGAATTCCAACTTCGACTTCGATCTGGGTCTCGGATCCAGCCGACCCAAATCGCTCAACGATCAGAAGAACAAGACCTCATCTTTCTCCTCCGCCACCGCCGCCCAATCCCGACCCTCCTGGCAACAACCCACCGCCGGCAGAACCACGTCCTGGACCCACCAGCCGGCTCCGACCCAGACCGCCCGACCCGGATTGACCAACGCCCCAACTTCCATGGTCGGCGATATCTTCGGCAAAACCTGGACTTCCGCGGCTCCGGCGGTTTCCGCCACCCCGATCACCGTCGTCAATAAAAACCCAAATTTGTTTGGGGATTTGGTCAGCTCTGCCATGGGTGGTAAGATCAATAGTAATAGCAATGTTCCTTTGAAGAATGCGACCCCGGCTTCGAATAAGAGCTCGTTTTCCATGGGAAACGTGGCCGATTCGTTGCCCAAAACCACCACCGCTGCTAGTAACTGTTCGGTGAAAAGTGGTGGTGCAAATTATGGTGCTTCTGGGAATTTTGGGAGTTTCTCCGGTGGGTATAATAGCAATGCCAATAAGGTTAGTAGTGGTGTCAATGCTAATAGTAATATGGGTGCGAATCTTGGAGGTCCTTCGCTGCGAAATATGGGCAGTGCTAGTGTTGGTGGCAGTGGATTGAGCTCTAAGAAAGACCCTTTTGGTTCTTTGGTTGATCTCGCGTCGAAACCATCGGCTACTATTAATTCAGCGAGTAAAACCAGTGTTAAAAGTAGTGTTGATGATGCTTTTGGAGATTTTCAGAATGCTCCGAAACCAAGCACCGCCAATACTTCATTTGCCTCGAGTGCCTTCTCAGATAGCGGTTTTATGGGGTCAAATTCGGATTCTGGCTTTGGGGATTTTGGGGTTTCGGCAAAGCCAAGCCCTGTTCAGTCTACTAACAATGATCCCTTCGACGTGTTATTTACCCCATCTTCGGTTTCGACTGGAGGTGCAGCAACAGCGAATAATGGGGTTGGAATGCAGCAATCCTCTGAAGTTGATGATTGGGGGACAGAGTTTGGAGGAGGACATGGTGACGGTGGTTCGACAACTGAGCTTGAGGGTCTTCCACCTCCTCCTGCTGGGGTGTCAGCTTCAACAGCAAAGAATAAAGGAATGGATAATTACAAGCAAGGGCAGTATCCTGATGCTATTAAGTGGCTTTCTTGGGCTGTGATTCTTCTTGAGAAAGCAGCTGATAGTGCTGGCGTTGCGGATGTTTTGTCAAGCAGGGCCTCATGTTACAAAGAAGTTGGGGAGTATAAGAAAGCTGTGGCGGACTGCACAAAGGTTCTAGATAAAGACGAAGCAAATGTATCTGTTCTGGTGCAGCGTGCGCTCTTGTACGAAAGTATGGAAAAGTATAGACTTGGGGCAGAAGATCTGAGGACTGTTCTGAAGTTTGATCCAAGTAACAGGGTTGCAAGAAGCACCGTTCACCGCTTGACGAAATTGGCAGACTAG

Protein Analysis

492

Amino Acids

50.46

Weight (kDa)

8.53

Isoelectric Point (pI)

33.4

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 153
AccI GTMKAC 1 cut(s) 905
AccII CGCG 2 cut(s) 254, 689
AclWI GGATC 4 cut(s) 30, 43, 911, 1412
AcoI YGGCCR 1 cut(s) 423
AcsI RAATTY 4 cut(s) 4, 304, 505, 847
AcuI CTGAAG 2 cut(s) 1026, 1430
AfaI GTAC 1 cut(s) 1358
AfiI CCNNNNNNNGG 5 cut(s) 137, 153, 166, 946, 1094
AflIII ACRYGT 1 cut(s) 927
AgsI TTSAA 2 cut(s) 373, 1110
AjiI CACGTC 2 cut(s) 150, 928
AjnI CCWGG 3 cut(s) 119, 152, 242
AjuI GAANNNNNNNTTGG 1 cut(s) 34
AluBI AGCT 7 cut(s) 327, 402, 651, 1069, 1106, 1208, 1283
AluI AGCT 7 cut(s) 327, 402, 651, 1069, 1106, 1208, 1283
Alw21I GWGCWC 2 cut(s) 404, 653
Alw26I GTCTC 1 cut(s) 35
AlwI GGATC 4 cut(s) 30, 43, 911, 1412
Ama87I CYCGRG 1 cut(s) 811
AoxI GGCC 2 cut(s) 423, 1245
ApeKI GCWGC 6 cut(s) 452, 607, 965, 994, 1205, 1342
ApoI RAATTY 4 cut(s) 4, 304, 505, 847
ArsI GACNNNNNNTTYG 2 cut(s) 373, 405
AseI ATTAAT 1 cut(s) 711
AspLEI GCGC 1 cut(s) 1351
AspS9I GGNCC 3 cut(s) 156, 599, 1245
AsuC2I CCSGG 2 cut(s) 192, 386
AsuHPI GGTGA 4 cut(s) 274, 481, 1058, 1442
AsuII TTCGAA 1 cut(s) 392
AvaI CYCGRG 1 cut(s) 811
AvaII GGWCC 2 cut(s) 156, 599
BamHI GGATCC 1 cut(s) 35
BanII GRGCYC 2 cut(s) 404, 653
BbsI GAAGAC 1 cut(s) 1070
Bbv12I GWGCWC 2 cut(s) 404, 653
BbvI GCAGC 6 cut(s) 439, 594, 977, 1006, 1217, 1354
BccI CCATC 2 cut(s) 706, 949
BciT130I CCWGG 3 cut(s) 121, 154, 244
BciVI GTATCC 1 cut(s) 1164
BcnI CCSGG 2 cut(s) 192, 386
BcoDI GTCTC 1 cut(s) 35
BfaI CTAG 4 cut(s) 456, 627, 1307, 1474
BfuI GTATCC 1 cut(s) 1164
BglII AGATCT 1 cut(s) 1393
BisI GCNGC 8 cut(s) 102, 255, 453, 608, 966, 995, 1206, 1343
BlsI GCNGC 8 cut(s) 103, 256, 454, 609, 967, 996, 1207, 1344
Bme1390I CCNGG 5 cut(s) 121, 154, 192, 244, 386
Bme18I GGWCC 2 cut(s) 156, 599
BmeT110I CYCGRG 1 cut(s) 811
BmgBI CACGTC 2 cut(s) 150, 928
BmgT120I GGNCC 3 cut(s) 156, 599, 1245
BmiI GGNNCC 4 cut(s) 37, 158, 171, 258
BmrFI CCNGG 5 cut(s) 121, 154, 192, 244, 386
BmsI GCATC 2 cut(s) 742, 1150
BpiI GAAGAC 1 cut(s) 1070
BpmI CTGGAG 1 cut(s) 978
Bpu14I TTCGAA 1 cut(s) 392
BpuEI CTTGAG 2 cut(s) 1091, 1217
BpuMI CCSGG 2 cut(s) 192, 386
BsaI GGTCTC 1 cut(s) 35
BsaJI CCNNGG 5 cut(s) 216, 252, 333, 384, 411
BsaWI WCCGGW 1 cut(s) 521
Bsc4I CCNNNNNNNGG 5 cut(s) 137, 153, 166, 946, 1094
Bse118I RCCGGY 2 cut(s) 137, 166
Bse1I ACTGG 2 cut(s) 729, 961
Bse3DI GCAATG 2 cut(s) 367, 544
BseBI CCWGG 3 cut(s) 121, 154, 244
BseDI CCNNGG 5 cut(s) 216, 252, 333, 384, 411
BseGI GGATG 1 cut(s) 1234
BseLI CCNNNNNNNGG 5 cut(s) 137, 153, 166, 946, 1094
BseMI GCAATG 2 cut(s) 367, 544
BseMII CTCAG 3 cut(s) 837, 1056, 1388
BseNI ACTGG 2 cut(s) 729, 961
BseRI GAGGAG 3 cut(s) 79, 1050, 1077
BseXI GCAGC 6 cut(s) 439, 594, 977, 1006, 1217, 1354
BseYI CCCAGC 1 cut(s) 1094
BsgI GTGCAG 3 cut(s) 984, 1279, 1361
Bsh1236I CGCG 2 cut(s) 254, 689
BshFI GGCC 2 cut(s) 425, 1247
BsiHKAI GWGCWC 2 cut(s) 404, 653
BsiHKCI CYCGRG 1 cut(s) 811
BsiSI CCGG 6 cut(s) 138, 167, 192, 260, 386, 522
BslFI GGGAC 1 cut(s) 1036
BslI CCNNNNNNNGG 5 cut(s) 137, 153, 166, 946, 1094
BsmAI GTCTC 1 cut(s) 35
BsmFI GGGAC 1 cut(s) 1036
BsmI GAATGC 3 cut(s) 382, 778, 996
BsnI GGCC 2 cut(s) 425, 1247
Bso31I GGTCTC 1 cut(s) 35
BsoBI CYCGRG 1 cut(s) 811
Bsp119I TTCGAA 1 cut(s) 392
Bsp1286I GDGCHC 2 cut(s) 404, 653
Bsp143I GATC 9 cut(s) 22, 35, 61, 279, 345, 682, 916, 1393, 1417
Bsp19I CCATGG 3 cut(s) 216, 333, 411
BspANI GGCC 2 cut(s) 425, 1247
BspCNI CTCAG 3 cut(s) 836, 1057, 1389
BspFNI CGCG 2 cut(s) 254, 689
BspLI GGNNCC 4 cut(s) 37, 158, 171, 258
BspPI GGATC 4 cut(s) 30, 43, 911, 1412
BspT104I TTCGAA 1 cut(s) 392
BspTNI GGTCTC 1 cut(s) 35
BsrDI GCAATG 2 cut(s) 367, 544
BsrFI RCCGGY 2 cut(s) 137, 166
BsrI ACTGG 2 cut(s) 729, 961
BssAI RCCGGY 2 cut(s) 137, 166
BssECI CCNNGG 5 cut(s) 216, 252, 333, 384, 411
BssMI GATC 9 cut(s) 22, 35, 61, 279, 345, 682, 916, 1393, 1417
BssT1I CCWWGG 3 cut(s) 216, 333, 411
Bst2UI CCWGG 3 cut(s) 121, 154, 244
Bst4CI ACNGT 5 cut(s) 286, 464, 1052, 1405, 1447
BstBI TTCGAA 1 cut(s) 392
BstC8I GCNNGC 4 cut(s) 139, 168, 1219, 1347
BstDEI CTNAG 4 cut(s) 654, 823, 1065, 1397
BstDSI CCRYGG 4 cut(s) 216, 252, 333, 411
BstF5I GGATG 1 cut(s) 1234
BstFNI CGCG 2 cut(s) 254, 689
BstHHI GCGC 1 cut(s) 1351
BstKTI GATC 9 cut(s) 25, 38, 64, 282, 348, 685, 919, 1396, 1420
BstMAI GTCTC 1 cut(s) 35
BstMBI GATC 9 cut(s) 22, 35, 61, 279, 345, 682, 916, 1393, 1417
BstNI CCWGG 3 cut(s) 121, 154, 244
BstSCI CCNGG 5 cut(s) 119, 152, 190, 242, 384
BstUI CGCG 2 cut(s) 254, 689
BstV1I GCAGC 6 cut(s) 439, 594, 977, 1006, 1217, 1354
BstV2I GAAGAC 1 cut(s) 1070
BstX2I RGATCY 2 cut(s) 35, 1393
BstYI RGATCY 2 cut(s) 35, 1393
BsuI GTATCC 1 cut(s) 1164
BsuRI GGCC 2 cut(s) 425, 1247
BtgI CCRYGG 4 cut(s) 216, 252, 333, 411
BtrI CACGTC 2 cut(s) 150, 928
BtsCI GGATG 1 cut(s) 1234
BtsI GCAGTG 2 cut(s) 628, 646
BtsIMutI CAGTG 3 cut(s) 628, 646, 736
Cac8I GCNNGC 4 cut(s) 139, 168, 1219, 1347
CfoI GCGC 1 cut(s) 1351
Cfr10I RCCGGY 2 cut(s) 137, 166
Cfr13I GGNCC 3 cut(s) 156, 599, 1245
Cfr42I CCGCGG 1 cut(s) 255
CseI GACGC 1 cut(s) 678
Csp6I GTAC 1 cut(s) 1357
CviAII CATG 5 cut(s) 217, 334, 412, 1043, 1251
CviQI GTAC 1 cut(s) 1357
DdeI CTNAG 4 cut(s) 654, 823, 1065, 1397
DpnI GATC 9 cut(s) 24, 37, 63, 281, 347, 684, 918, 1395, 1419
DpnII GATC 9 cut(s) 22, 35, 61, 279, 345, 682, 916, 1393, 1417
EaeI YGGCCR 1 cut(s) 423
EciI GGCGGA 3 cut(s) 82, 259, 1304
Ecl136II GAGCTC 2 cut(s) 402, 651
Eco130I CCWWGG 3 cut(s) 216, 333, 411
Eco24I GRGCYC 2 cut(s) 404, 653
Eco31I GGTCTC 1 cut(s) 35
Eco32I GATATC 1 cut(s) 229
Eco47I GGWCC 2 cut(s) 156, 599
Eco53kI GAGCTC 2 cut(s) 402, 651
Eco57I CTGAAG 2 cut(s) 1026, 1430
Eco88I CYCGRG 1 cut(s) 811
EcoICRI GAGCTC 2 cut(s) 402, 651
EcoO109I RGGNCCY 2 cut(s) 599, 1245
EcoRI GAATTC 1 cut(s) 4
EcoRII CCWGG 3 cut(s) 119, 152, 242
EcoRV GATATC 1 cut(s) 229
EcoT14I CCWWGG 3 cut(s) 216, 333, 411
EcoT38I GRGCYC 2 cut(s) 404, 653
ErhI CCWWGG 3 cut(s) 216, 333, 411
FaeI CATG 5 cut(s) 220, 337, 415, 1046, 1254
FaqI GGGAC 1 cut(s) 1036
FatI CATG 5 cut(s) 216, 333, 411, 1042, 1250
FblI GTMKAC 1 cut(s) 905
Fnu4HI GCNGC 8 cut(s) 102, 255, 453, 608, 966, 995, 1206, 1343
FokI GGATG 1 cut(s) 1241
FriOI GRGCYC 2 cut(s) 404, 653
Fsp4HI GCNGC 8 cut(s) 102, 255, 453, 608, 966, 995, 1206, 1343
FspBI CTAG 4 cut(s) 456, 627, 1307, 1474
GlaI GCGC 1 cut(s) 1350
GluI GCNGC 8 cut(s) 102, 255, 453, 608, 966, 995, 1206, 1343
GsaI CCCAGC 1 cut(s) 1098
GsuI CTGGAG 1 cut(s) 978
HaeIII GGCC 2 cut(s) 425, 1247
HapII CCGG 6 cut(s) 138, 167, 192, 260, 386, 522
HgaI GACGC 1 cut(s) 678
HhaI GCGC 1 cut(s) 1351
Hin1II CATG 5 cut(s) 220, 337, 415, 1046, 1254
Hin6I GCGC 1 cut(s) 1349
HinP1I GCGC 1 cut(s) 1349
HinfI GANTC 4 cut(s) 428, 589, 854, 1189
HpaII CCGG 6 cut(s) 138, 167, 192, 260, 386, 522
HphI GGTGA 4 cut(s) 274, 481, 1058, 1442
Hpy166II GTNNAC 2 cut(s) 906, 1450
Hpy188III TCNNGA 4 cut(s) 111, 1157, 1196, 1307
Hpy8I GTNNAC 2 cut(s) 906, 1450
Hpy99I CGWCG 3 cut(s) 290, 694, 929
HpyAV CCTTC 3 cut(s) 612, 829, 931
HpyCH4III ACNGT 5 cut(s) 286, 464, 1052, 1405, 1447
HpyCH4IV ACGT 3 cut(s) 149, 420, 927
HpyCH4V TGCA 6 cut(s) 485, 965, 994, 1296, 1342, 1436
HpyF3I CTNAG 4 cut(s) 654, 823, 1065, 1397
HpySE526I ACGT 3 cut(s) 149, 420, 927
Hsp92II CATG 5 cut(s) 220, 337, 415, 1046, 1254
HspAI GCGC 1 cut(s) 1349
KroI GCCGGC 2 cut(s) 137, 166
KroNI GCCGGC 2 cut(s) 139, 168
KspI CCGCGG 1 cut(s) 255
Kzo9I GATC 9 cut(s) 22, 35, 61, 279, 345, 682, 916, 1393, 1417
LmnI GCTCC 3 cut(s) 175, 262, 781
Lsp1109I GCAGC 6 cut(s) 439, 594, 977, 1006, 1217, 1354
LweI GCATC 2 cut(s) 742, 1150
MaeI CTAG 4 cut(s) 456, 627, 1307, 1474
MaeII ACGT 3 cut(s) 149, 420, 927
MaeIII GTNAC 4 cut(s) 458, 1046, 1253, 1424
MalI GATC 9 cut(s) 24, 37, 63, 281, 347, 684, 918, 1395, 1419
MboI GATC 9 cut(s) 22, 35, 61, 279, 345, 682, 916, 1393, 1417
MboII GAAGA 7 cut(s) 79, 223, 385, 936, 1070, 1184, 1403
MflI RGATCY 2 cut(s) 35, 1393
MhlI GDGCHC 2 cut(s) 404, 653
MluCI AATT 8 cut(s) 4, 304, 487, 505, 712, 847, 1135, 1463
MmeI TCCRAC 3 cut(s) 33, 197, 967
MroNI GCCGGC 2 cut(s) 137, 166
MseI TTAA 3 cut(s) 711, 735, 1167
MspA1I CMGCKG 3 cut(s) 254, 452, 1208
MspI CCGG 6 cut(s) 138, 167, 192, 260, 386, 522
MspR9I CCNGG 5 cut(s) 121, 154, 192, 244, 386
Mva1269I GAATGC 3 cut(s) 382, 778, 996
MvaI CCWGG 3 cut(s) 121, 154, 244
MvnI CGCG 2 cut(s) 254, 689
NaeI GCCGGC 2 cut(s) 139, 168
NciI CCSGG 2 cut(s) 192, 386
NcoI CCATGG 3 cut(s) 216, 333, 411
NdeII GATC 9 cut(s) 22, 35, 61, 279, 345, 682, 916, 1393, 1417
NgoMIV GCCGGC 2 cut(s) 137, 166
NlaIII CATG 5 cut(s) 220, 337, 415, 1046, 1254
NlaIV GGNNCC 4 cut(s) 37, 158, 171, 258
NmuCI GTSAC 1 cut(s) 1046
NspV TTCGAA 1 cut(s) 392
PaeR7I CTCGAG 1 cut(s) 811
PctI GAATGC 3 cut(s) 382, 778, 996
PdiI GCCGGC 2 cut(s) 139, 168
PfeI GAWTC 4 cut(s) 428, 589, 854, 1189
PflMI CCANNNNNTGG 1 cut(s) 153
PfoI TCCNGGA 1 cut(s) 152
PkrI GCNGC 8 cut(s) 103, 256, 454, 609, 967, 996, 1207, 1344
PpuMI RGGWCCY 1 cut(s) 599
PshBI ATTAAT 1 cut(s) 711
Psp124BI GAGCTC 2 cut(s) 404, 653
Psp5II RGGWCCY 1 cut(s) 599
Psp6I CCWGG 3 cut(s) 119, 152, 242
PspFI CCCAGC 1 cut(s) 1094
PspGI CCWGG 3 cut(s) 119, 152, 242
PspN4I GGNNCC 4 cut(s) 37, 158, 171, 258
PspPI GGNCC 3 cut(s) 156, 599, 1245
PspPPI RGGWCCY 1 cut(s) 599
PspXI VCTCGAGB 1 cut(s) 811
PsuI RGATCY 2 cut(s) 35, 1393
PvuII CAGCTG 1 cut(s) 1208
RsaI GTAC 1 cut(s) 1358
RsaNI GTAC 1 cut(s) 1357
SacI GAGCTC 2 cut(s) 404, 653
SacII CCGCGG 1 cut(s) 255
SaqAI TTAA 3 cut(s) 711, 735, 1167
SatI GCNGC 8 cut(s) 102, 255, 453, 608, 966, 995, 1206, 1343
Sau3AI GATC 9 cut(s) 22, 35, 61, 279, 345, 682, 916, 1393, 1417
Sau96I GGNCC 3 cut(s) 156, 599, 1245
ScrFI CCNGG 5 cut(s) 121, 154, 192, 244, 386
SduI GDGCHC 2 cut(s) 404, 653
SfaNI GCATC 2 cut(s) 742, 1150
Sfr274I CTCGAG 1 cut(s) 811
Sfr303I CCGCGG 1 cut(s) 255
SfuI TTCGAA 1 cut(s) 392
SgrBI CCGCGG 1 cut(s) 255
SinI GGWCC 2 cut(s) 156, 599
SlaI CTCGAG 1 cut(s) 811
SmlI CTYRAG 3 cut(s) 811, 1070, 1196
SmoI CTYRAG 3 cut(s) 811, 1070, 1196
Sse9I AATT 8 cut(s) 4, 304, 487, 505, 712, 847, 1135, 1463
SspMI CTAG 4 cut(s) 456, 627, 1307, 1474
SstI GAGCTC 2 cut(s) 404, 653
StyD4I CCNGG 5 cut(s) 119, 152, 190, 242, 384
StyI CCWWGG 3 cut(s) 216, 333, 411
TaaI ACNGT 5 cut(s) 286, 464, 1052, 1405, 1447
TaiI ACGT 3 cut(s) 152, 423, 930
TaqI TCGA 8 cut(s) 15, 21, 392, 692, 812, 924, 953, 1058
TasI AATT 8 cut(s) 4, 304, 487, 505, 712, 847, 1135, 1463
TauI GCSGC 2 cut(s) 104, 257
TfiI GAWTC 4 cut(s) 428, 589, 854, 1189
Tru1I TTAA 3 cut(s) 711, 735, 1167
Tru9I TTAA 3 cut(s) 711, 735, 1167
TscAI CASTG 3 cut(s) 628, 646, 736
TseFI GTSAC 1 cut(s) 1046
TseI GCWGC 6 cut(s) 452, 607, 965, 994, 1205, 1342
Tsp45I GTSAC 1 cut(s) 1046
TspDTI ATGAA 2 cut(s) 17, 792
TspRI CASTG 3 cut(s) 628, 646, 736
Van91I CCANNNNNTGG 1 cut(s) 153
VpaK11BI GGWCC 2 cut(s) 156, 599
VspI ATTAAT 1 cut(s) 711
XapI RAATTY 4 cut(s) 4, 304, 505, 847
XbaI TCTAGA 1 cut(s) 1306
XcmI CCANNNNNNNNNTGG 1 cut(s) 418
XhoI CTCGAG 1 cut(s) 811
XmiI GTMKAC 1 cut(s) 905
XspI CTAG 4 cut(s) 456, 627, 1307, 1474
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.