Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb2

Orthogroup ID

OG0008706

Physical Location & Seq

Genomic Coordinates Reverse (-)

4613358 .. 4613728

Gene Structure 371 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_2g05641.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 336 bp

ATGTCGTCGCAGCCACCAGCGATTATGTCAACATCAGAGGCGGCCGCTTTTTCACTGCCAGAATCAGAAACAACCCGCCTTTTGTTTTCGGTAGCAGTAGCAATCTCGGTGGAGCTAGTCGACAACGGCCTTCGATTCTCCCGAAAGTCCCAAACTCGGTCAATGAACACAGAGACGTCGGCGATGGAGCTGCGAGCCAGAAAGTACTTGTGCGCCTATCTGCGCCTATCAAACTCAGAAGTGAATGAAACAGGATCGTGGCCTCGTGGAAGGGAGGAGGTTGAAGATTTCAAGCGGCGGTGGTTGTTTCATGTTTTAATTACGATTTCATGCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

112

Amino Acids

12.58

Weight (kDa)

7.81

Isoelectric Point (pI)

65.38

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0008706)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G16760 AT3G16760
fragaria_vesca	FvH4_2g05641 FvH4_4g18770 FvH4_4g18770 FvH4_5g32471 FvH4_5g32480
malus_domestica	MD13G1163500.v1.1 MD16G1163000.v1.1
prunus_persica	Prupe.1G130400_v2.0.a1
pyrus_communis	pycom13g13930 pycom16g13810
rosa_chinensis	RchiOBHm_Chr4g0423561
rosa_laevigata	RLG00000007547
rosa_multiflora	Rmu_sc0004342.1_g000013 Rmu_sc0008281.1_g000006
rosa_roxburghii	Rroxscaffold_5G00365790
rosa_rugosa	Rorug04G0188700
rosa_samantha	Rh4AG248200 Rh4BG253400 Rh4CG261500 Rh4DG248700
rosa_wichuraiana	Rw4G021260

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	179
AccI	GTMKAC	1 cut(s)	120
AciI	CCGC	5 cut(s)	41, 45, 76, 295, 298
AclWI	GGATC	1 cut(s)	262
AcoI	YGGCCR	1 cut(s)	42
AcyI	GRCGYC	1 cut(s)	176
AfaI	GTAC	1 cut(s)	206
AfiI	CCNNNNNNNGG	1 cut(s)	156
AgsI	TTSAA	2 cut(s)	284, 292
AluBI	AGCT	2 cut(s)	115, 190
AluI	AGCT	2 cut(s)	115, 190
Alw26I	GTCTC	1 cut(s)	167
AlwI	GGATC	1 cut(s)	262
AoxI	GGCC	3 cut(s)	42, 127, 260
ApeKI	GCWGC	2 cut(s)	10, 190
AspLEI	GCGC	2 cut(s)	215, 225
BauI	CACGAG	1 cut(s)	264
BbvI	GCAGC	2 cut(s)	22, 177
BccI	CCATC	1 cut(s)	178
BceAI	ACGGC	1 cut(s)	142
BcgI	CGANNNNNNTGC	2 cut(s)	172, 206
BcoDI	GTCTC	1 cut(s)	167
BfaI	CTAG	2 cut(s)	116, 334
BisI	GCNGC	5 cut(s)	11, 42, 45, 191, 296
BlsI	GCNGC	5 cut(s)	12, 43, 46, 192, 297
BmcAI	AGTACT	1 cut(s)	206
BsaHI	GRCGYC	1 cut(s)	176
Bsc4I	CCNNNNNNNGG	1 cut(s)	156
BseLI	CCNNNNNNNGG	1 cut(s)	156
BseMII	CTCAG	1 cut(s)	249
BseRI	GAGGAG	1 cut(s)	290
BseX3I	CGGCCG	1 cut(s)	42
BseXI	GCAGC	2 cut(s)	22, 177
Bsh1285I	CGRYCG	1 cut(s)	45
BshFI	GGCC	3 cut(s)	44, 129, 262
BsiEI	CGRYCG	1 cut(s)	45
BslFI	GGGAC	1 cut(s)	133
BslI	CCNNNNNNNGG	1 cut(s)	156
BsmAI	GTCTC	1 cut(s)	167
BsmBI	CGTCTC	1 cut(s)	167
BsmFI	GGGAC	1 cut(s)	133
BsnI	GGCC	3 cut(s)	44, 129, 262
Bsp143I	GATC	1 cut(s)	254
BspACI	CCGC	5 cut(s)	41, 45, 76, 295, 298
BspANI	GGCC	3 cut(s)	44, 129, 262
BspCNI	CTCAG	1 cut(s)	248
BspPI	GGATC	1 cut(s)	262
BssMI	GATC	1 cut(s)	254
BssNI	GRCGYC	1 cut(s)	176
BssSI	CACGAG	1 cut(s)	264
Bst2BI	CACGAG	1 cut(s)	264
BstACI	GRCGYC	1 cut(s)	176
BstC8I	GCNNGC	1 cut(s)	195
BstDEI	CTNAG	1 cut(s)	235
BstHHI	GCGC	2 cut(s)	215, 225
BstKTI	GATC	1 cut(s)	257
BstMAI	GTCTC	1 cut(s)	167
BstMBI	GATC	1 cut(s)	254
BstMCI	CGRYCG	1 cut(s)	45
BstV1I	GCAGC	2 cut(s)	22, 177
BstZI	CGGCCG	1 cut(s)	42
BsuRI	GGCC	3 cut(s)	44, 129, 262
BtgZI	GCGATG	1 cut(s)	197
BtsI	GCAGTG	1 cut(s)	53
BtsIMutI	CAGTG	1 cut(s)	53
Cac8I	GCNNGC	1 cut(s)	195
CciNI	GCGGCCGC	1 cut(s)	42
CfoI	GCGC	2 cut(s)	215, 225
Csp6I	GTAC	1 cut(s)	205
CspCI	CAANNNNNGTGG	2 cut(s)	90, 125
CviAII	CATG	2 cut(s)	311, 330
CviJI	RGCY	7 cut(s)	13, 44, 115, 129, 190, 197, 262
CviKI_1	RGCY	7 cut(s)	13, 44, 115, 129, 190, 197, 262
CviQI	GTAC	1 cut(s)	205
DdeI	CTNAG	1 cut(s)	235
DpnI	GATC	1 cut(s)	256
DpnII	GATC	1 cut(s)	254
EaeI	YGGCCR	1 cut(s)	42
EagI	CGGCCG	1 cut(s)	42
EclXI	CGGCCG	1 cut(s)	42
Eco52I	CGGCCG	1 cut(s)	42
Esp3I	CGTCTC	1 cut(s)	167
FaeI	CATG	2 cut(s)	314, 333
FaiI	YATR	3 cut(s)	26, 312, 331
FaqI	GGGAC	1 cut(s)	133
FatI	CATG	2 cut(s)	310, 329
FauI	CCCGC	1 cut(s)	83
FblI	GTMKAC	1 cut(s)	120
Fnu4HI	GCNGC	5 cut(s)	11, 42, 45, 191, 296
Fsp4HI	GCNGC	5 cut(s)	11, 42, 45, 191, 296
FspBI	CTAG	2 cut(s)	116, 334
GlaI	GCGC	2 cut(s)	214, 224
GluI	GCNGC	5 cut(s)	11, 42, 45, 191, 296
HaeIII	GGCC	3 cut(s)	44, 129, 262
HhaI	GCGC	2 cut(s)	215, 225
Hin1I	GRCGYC	1 cut(s)	176
Hin1II	CATG	2 cut(s)	314, 333
Hin6I	GCGC	2 cut(s)	213, 223
HinP1I	GCGC	2 cut(s)	213, 223
HincII	GTYRAC	2 cut(s)	30, 121
HindII	GTYRAC	2 cut(s)	30, 121
HinfI	GANTC	2 cut(s)	62, 135
Hpy166II	GTNNAC	2 cut(s)	30, 121
Hpy188I	TCNGA	3 cut(s)	37, 67, 238
Hpy188III	TCNNGA	1 cut(s)	141
Hpy8I	GTNNAC	2 cut(s)	30, 121
Hpy99I	CGWCG	2 cut(s)	10, 181
HpyAV	CCTTC	2 cut(s)	140, 264
HpyCH4IV	ACGT	1 cut(s)	176
HpyF3I	CTNAG	1 cut(s)	235
HpySE526I	ACGT	1 cut(s)	176
Hsp92I	GRCGYC	1 cut(s)	176
Hsp92II	CATG	2 cut(s)	314, 333
HspAI	GCGC	2 cut(s)	213, 223
Kzo9I	GATC	1 cut(s)	254
LmnI	GCTCC	2 cut(s)	112, 187
LpnPI	CCDG	4 cut(s)	30, 72, 211, 237
Lsp1109I	GCAGC	2 cut(s)	22, 177
MaeI	CTAG	2 cut(s)	116, 334
MaeII	ACGT	1 cut(s)	176
MalI	GATC	1 cut(s)	256
MboI	GATC	1 cut(s)	254
MboII	GAAGA	1 cut(s)	296
MluCI	AATT	1 cut(s)	318
MnlI	CCTC	4 cut(s)	31, 268, 271, 273
MseI	TTAA	1 cut(s)	317
NdeII	GATC	1 cut(s)	254
NlaIII	CATG	2 cut(s)	314, 333
NotI	GCGGCCGC	1 cut(s)	42
PcsI	WCGNNNNNNNCGW	1 cut(s)	139
PfeI	GAWTC	2 cut(s)	62, 135
PkrI	GCNGC	5 cut(s)	12, 43, 46, 192, 297
RsaI	GTAC	1 cut(s)	206
RsaNI	GTAC	1 cut(s)	205
SalI	GTCGAC	1 cut(s)	119
SaqAI	TTAA	1 cut(s)	317
SatI	GCNGC	5 cut(s)	11, 42, 45, 191, 296
Sau3AI	GATC	1 cut(s)	254
ScaI	AGTACT	1 cut(s)	206
SetI	ASST	4 cut(s)	117, 179, 192, 282
Sse9I	AATT	1 cut(s)	318
SsiI	CCGC	5 cut(s)	41, 45, 76, 295, 298
SspMI	CTAG	2 cut(s)	116, 334
TaiI	ACGT	1 cut(s)	179
TaqI	TCGA	2 cut(s)	120, 133
TaqII	GACCGA	1 cut(s)	147
TasI	AATT	1 cut(s)	318
TatI	WGTACW	1 cut(s)	204
TauI	GCSGC	3 cut(s)	44, 47, 298
TfiI	GAWTC	2 cut(s)	62, 135
Tru1I	TTAA	1 cut(s)	317
Tru9I	TTAA	1 cut(s)	317
TscAI	CASTG	1 cut(s)	60
TseI	GCWGC	2 cut(s)	10, 190
TspDTI	ATGAA	4 cut(s)	179, 261, 299, 318
TspRI	CASTG	1 cut(s)	60
XmiI	GTMKAC	1 cut(s)	120
XspI	CTAG	2 cut(s)	116, 334
ZraI	GACGTC	1 cut(s)	177
ZrmI	AGTACT	1 cut(s)	206

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.