Prupe.1G130400_v2.0.a1

Tetratricopeptide repeats

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp01
Physical Location & Seq
Reverse (-)
10136184 .. 10139317
3134 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.1G130400.1

Sequence Viewer

Length: 1494 bp
ATGAATTCCAACTTCGACTTCGATCTGGGTCTCGGATCGAGCCGACCCAAATCGCTCAACGACCAGAAGAACAAAACATCTTCCTTTTCCTCCACCGCGACGGGGCAATCCAGACCCGCCTGGCAACCCCAGACCAACAAAACCACCTCCTGGACTCACCAGCCGACTCCGGCCCAGACGGTCCGACCCGGATTAACCAACGCCCCAACTTCCATGGTCGGCGATATCTTCGGCAAGAGTTGGGGATCCGCAGCTCCTTCGGTTTCGAGCACCCCGATTGCGGTCGTCAATAAAAACCCAAATTTGTTCGGAGATTTGGTCAGCTCTGCAATGGGTGGTAAGATCAATAGTAATAGCAACGTTCCTTTAAAGAACGCAACCCCAGCTTCGAATAAGAGCTCGTTTTCCATGGGAAACGTGGCCGATTCGTTGCCCAAAACCACCCCTGCCACTGGTAATGGTTCGGTGAAAAGTGGTGGTGCAAATTATGGTGCTTCTGGGAATTTTGGGAGTTTTTCTACTGGGTTTAATACTAGTAATACGATCAACAATAGTGTTAATGGTAATAGTAATAAGAGTCCAAACATCGGAGGTCCTTCGCTGCGAAATATGGTCAGTTCCGGTGTTGGTGTTGGTGGAATTGGCAGCGGATTGAGCTCTAAGAAAGACCCATTTGGTTCTTTGGTTGATCTCGCATCAAAACCATCGGCTACTATAAATTCATCGAGTAAAAGTAACAATAAAAGTAGTGTTCCTAGTGATGATGCTTTTGGAGATTTTCAGAATGCTCCAAAGCCAAGCACCACCACTGCTACATTTGCGTCTAGTGGCTTCACCTCGAATGATAACAGTTTTATGGGGTCAAACTCGGGTTCTGGCTTTGGGGATTTTGGGATTTCACCGAACCCGAACCCTGTTCAGTCTACTAGTAGTGATCCCTTCGACACTTTATTTGTCCCATCATCGGGTTCAGCTAGAGGTGCTGCAACAGCAAATAATGGAGTTGGAGTGCAGCAATCCTCTGACATTGATGACTGGGGGACAGAGTTTGGAGGAGGACATGATGTGGGTGGTTCGACAACTGAGCTTGAGGGTCTTCCACCTCCTCCTGCTGGGGTGTCAGCTTCAGTAGCAAAGAACAAAGGAATGGATAATTACAAGCAAGGGCAGTATCCTGATGCTATTAAGTGGCTTTCTTGGGCTGTAGTTCTTCTTGAGAAATCAGCTGATAGCTCTGCTGTTGCAGAGGTCTTGTCAAGCAGGGCTTCATGTTACAAAGAAGTAGGAGAGTATAAAAAAGCCGTGGCAGACTGCACAAAGGTTCTAGAACAAGATGATGCAAACATATCTGTTCTCGTACAGCGTGCGCTCTTGTATGAAAGTATGGAAAAGTACAGACTTGGGGCAGAGGATCTGAGGACAGTTCTGAGGTTTGATCCTAGTAACAGGGTTGCAAGAAGCACCATTCACCGCTTGACACAAATGGCAGACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

498

Amino Acids

51.34

Weight (kDa)

8.32

Isoelectric Point (pI)

39.39

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 150
AccI GTMKAC 1 cut(s) 923
AccII CGCG 1 cut(s) 98
AciI CCGC 6 cut(s) 96, 117, 249, 281, 648, 1471
AclI AACGTT 1 cut(s) 360
AclWI GGATC 6 cut(s) 43, 240, 253, 929, 1419, 1430
AcoI YGGCCR 1 cut(s) 420
AcsI RAATTY 4 cut(s) 4, 301, 502, 718
AcuI CTGAAG 1 cut(s) 1110
AfaI GTAC 2 cut(s) 1359, 1394
AfiI CCNNNNNNNGG 8 cut(s) 102, 150, 280, 452, 587, 964, 965, 1112
AhlI ACTAGT 2 cut(s) 533, 926
AjnI CCWGG 2 cut(s) 119, 149
AjuI GAANNNNNNNTTGG 1 cut(s) 34
Alw21I GWGCWC 3 cut(s) 272, 401, 659
Alw26I GTCTC 1 cut(s) 35
AlwI GGATC 6 cut(s) 43, 240, 253, 929, 1419, 1430
Ama87I CYCGRG 1 cut(s) 868
AoxI GGCC 2 cut(s) 171, 420
ApeKI GCWGC 5 cut(s) 251, 601, 645, 983, 1012
ApoI RAATTY 4 cut(s) 4, 301, 502, 718
ArsI GACNNNNNNTTYG 2 cut(s) 935, 967
AspLEI GCGC 1 cut(s) 1369
AspS9I GGNCC 3 cut(s) 172, 181, 593
AsuC2I CCSGG 1 cut(s) 189
AsuHPI GGTGA 5 cut(s) 149, 478, 826, 891, 1460
AsuII TTCGAA 1 cut(s) 389
AvaI CYCGRG 1 cut(s) 868
AvaII GGWCC 2 cut(s) 181, 593
BamHI GGATCC 1 cut(s) 245
BanII GRGCYC 2 cut(s) 401, 659
BbsI GAAGAC 1 cut(s) 1088
Bbv12I GWGCWC 3 cut(s) 272, 401, 659
BbvI GCAGC 5 cut(s) 263, 588, 657, 970, 1024
BccI CCATC 2 cut(s) 712, 967
BceAI ACGGC 1 cut(s) 1286
BcgI CGANNNNNNTGC 2 cut(s) 240, 274
BciT130I CCWGG 2 cut(s) 121, 151
BciVI GTATCC 1 cut(s) 1182
BcnI CCSGG 1 cut(s) 189
BcoDI GTCTC 1 cut(s) 35
BcuI ACTAGT 2 cut(s) 533, 926
BfaI CTAG 8 cut(s) 534, 756, 825, 927, 975, 1325, 1440, 1492
BfmI CTRYAG 1 cut(s) 1203
BfuI GTATCC 1 cut(s) 1182
BisI GCNGC 5 cut(s) 252, 602, 646, 984, 1013
BlsI GCNGC 5 cut(s) 253, 603, 647, 985, 1014
Bme1390I CCNGG 3 cut(s) 121, 151, 189
Bme18I GGWCC 2 cut(s) 181, 593
BmeT110I CYCGRG 1 cut(s) 868
BmgT120I GGNCC 3 cut(s) 172, 181, 593
BmiI GGNNCC 1 cut(s) 247
BmrFI CCNGG 3 cut(s) 121, 151, 189
BmrI ACTGGG 2 cut(s) 531, 1045
BmsI GCATC 4 cut(s) 704, 754, 1168, 1327
BmuI ACTGGG 2 cut(s) 531, 1045
BpiI GAAGAC 1 cut(s) 1088
Bpu14I TTCGAA 1 cut(s) 389
BpuEI CTTGAG 2 cut(s) 1109, 1235
BpuMI CCSGG 1 cut(s) 189
BsaI GGTCTC 1 cut(s) 35
BsaJI CCNNGG 3 cut(s) 213, 408, 1302
BsaWI WCCGGW 1 cut(s) 620
BsaXI ACNNNNNCTCC 4 cut(s) 303, 333, 993, 1023
Bsc4I CCNNNNNNNGG 8 cut(s) 102, 150, 280, 452, 587, 964, 965, 1112
Bse1I ACTGG 3 cut(s) 457, 526, 1040
Bse3DI GCAATG 1 cut(s) 336
BseBI CCWGG 2 cut(s) 121, 151
BseDI CCNNGG 3 cut(s) 213, 408, 1302
BseLI CCNNNNNNNGG 8 cut(s) 102, 150, 280, 452, 587, 964, 965, 1112
BseMI GCAATG 1 cut(s) 336
BseMII CTCAG 3 cut(s) 1074, 1406, 1418
BseNI ACTGG 3 cut(s) 457, 526, 1040
BseRI GAGGAG 2 cut(s) 1068, 1095
BseXI GCAGC 5 cut(s) 263, 588, 657, 970, 1024
BseYI CCCAGC 2 cut(s) 382, 1112
BsgI GTGCAG 2 cut(s) 1031, 1297
Bsh1236I CGCG 1 cut(s) 98
Bsh1285I CGRYCG 1 cut(s) 285
BshFI GGCC 2 cut(s) 173, 422
BsiEI CGRYCG 1 cut(s) 285
BsiHKAI GWGCWC 3 cut(s) 272, 401, 659
BsiHKCI CYCGRG 1 cut(s) 868
BsiSI CCGG 3 cut(s) 170, 189, 621
BslFI GGGAC 2 cut(s) 941, 1054
BslI CCNNNNNNNGG 8 cut(s) 102, 150, 280, 452, 587, 964, 965, 1112
BsmAI GTCTC 1 cut(s) 35
BsmFI GGGAC 2 cut(s) 941, 1054
BsmI GAATGC 1 cut(s) 790
BsnI GGCC 2 cut(s) 173, 422
Bso31I GGTCTC 1 cut(s) 35
BsoBI CYCGRG 1 cut(s) 868
Bsp119I TTCGAA 1 cut(s) 389
Bsp1286I GDGCHC 3 cut(s) 272, 401, 659
Bsp143I GATC 9 cut(s) 22, 35, 245, 342, 543, 688, 934, 1411, 1435
Bsp19I CCATGG 2 cut(s) 213, 408
BspACI CCGC 6 cut(s) 96, 117, 249, 281, 648, 1471
BspANI GGCC 2 cut(s) 173, 422
BspCNI CTCAG 3 cut(s) 1075, 1407, 1419
BspFNI CGCG 1 cut(s) 98
BspLI GGNNCC 1 cut(s) 247
BspPI GGATC 6 cut(s) 43, 240, 253, 929, 1419, 1430
BspT104I TTCGAA 1 cut(s) 389
BspTNI GGTCTC 1 cut(s) 35
BsrDI GCAATG 1 cut(s) 336
BsrI ACTGG 3 cut(s) 457, 526, 1040
BssECI CCNNGG 3 cut(s) 213, 408, 1302
BssMI GATC 9 cut(s) 22, 35, 245, 342, 543, 688, 934, 1411, 1435
BssT1I CCWWGG 2 cut(s) 213, 408
Bst2UI CCWGG 2 cut(s) 121, 151
Bst4CI ACNGT 3 cut(s) 181, 851, 1423
BstBI TTCGAA 1 cut(s) 389
BstC8I GCNNGC 1 cut(s) 1365
BstDEI CTNAG 4 cut(s) 660, 1083, 1415, 1427
BstDSI CCRYGG 3 cut(s) 213, 408, 1302
BstFNI CGCG 1 cut(s) 98
BstHHI GCGC 1 cut(s) 1369
BstKTI GATC 9 cut(s) 25, 38, 248, 345, 546, 691, 937, 1414, 1438
BstMAI GTCTC 1 cut(s) 35
BstMBI GATC 9 cut(s) 22, 35, 245, 342, 543, 688, 934, 1411, 1435
BstMCI CGRYCG 1 cut(s) 285
BstMWI GCNNNNNNNGC 6 cut(s) 383, 654, 818, 980, 989, 1130
BstNI CCWGG 2 cut(s) 121, 151
BstSCI CCNGG 3 cut(s) 119, 149, 187
BstSFI CTRYAG 1 cut(s) 1203
BstUI CGCG 1 cut(s) 98
BstV1I GCAGC 5 cut(s) 263, 588, 657, 970, 1024
BstV2I GAAGAC 1 cut(s) 1088
BstX2I RGATCY 2 cut(s) 245, 1411
BstYI RGATCY 2 cut(s) 245, 1411
BsuI GTATCC 1 cut(s) 1182
BsuRI GGCC 2 cut(s) 173, 422
BtgI CCRYGG 3 cut(s) 213, 408, 1302
BtsI GCAGTG 1 cut(s) 807
BtsIMutI CAGTG 2 cut(s) 450, 807
Cac8I GCNNGC 1 cut(s) 1365
CfoI GCGC 1 cut(s) 1369
Cfr13I GGNCC 3 cut(s) 172, 181, 593
CpoI CGGWCCG 1 cut(s) 181
CseI GACGC 1 cut(s) 810
Csp6I GTAC 2 cut(s) 1358, 1393
CspI CGGWCCG 1 cut(s) 181
CviAII CATG 4 cut(s) 214, 409, 1061, 1269
CviQI GTAC 2 cut(s) 1358, 1393
DdeI CTNAG 4 cut(s) 660, 1083, 1415, 1427
DpnI GATC 9 cut(s) 24, 37, 247, 344, 545, 690, 936, 1413, 1437
DpnII GATC 9 cut(s) 22, 35, 245, 342, 543, 688, 934, 1411, 1435
DraI TTTAAA 1 cut(s) 369
EaeI YGGCCR 1 cut(s) 420
Ecl136II GAGCTC 2 cut(s) 399, 657
Eco130I CCWWGG 2 cut(s) 213, 408
Eco24I GRGCYC 2 cut(s) 401, 659
Eco31I GGTCTC 1 cut(s) 35
Eco32I GATATC 1 cut(s) 226
Eco47I GGWCC 2 cut(s) 181, 593
Eco53kI GAGCTC 2 cut(s) 399, 657
Eco57I CTGAAG 1 cut(s) 1110
Eco88I CYCGRG 1 cut(s) 868
EcoICRI GAGCTC 2 cut(s) 399, 657
EcoO109I RGGNCCY 1 cut(s) 593
EcoRI GAATTC 1 cut(s) 4
EcoRII CCWGG 2 cut(s) 119, 149
EcoRV GATATC 1 cut(s) 226
EcoT14I CCWWGG 2 cut(s) 213, 408
EcoT38I GRGCYC 2 cut(s) 401, 659
ErhI CCWWGG 2 cut(s) 213, 408
FaeI CATG 4 cut(s) 217, 412, 1064, 1272
FalI AAGNNNNNCTT 2 cut(s) 1249, 1281
FaqI GGGAC 2 cut(s) 941, 1054
FatI CATG 4 cut(s) 213, 408, 1060, 1268
FauI CCCGC 1 cut(s) 124
FblI GTMKAC 1 cut(s) 923
Fnu4HI GCNGC 5 cut(s) 252, 602, 646, 984, 1013
FriOI GRGCYC 2 cut(s) 401, 659
Fsp4HI GCNGC 5 cut(s) 252, 602, 646, 984, 1013
FspBI CTAG 8 cut(s) 534, 756, 825, 927, 975, 1325, 1440, 1492
GlaI GCGC 1 cut(s) 1368
GluI GCNGC 5 cut(s) 252, 602, 646, 984, 1013
GsaI CCCAGC 2 cut(s) 386, 1116
HaeIII GGCC 2 cut(s) 173, 422
HapII CCGG 3 cut(s) 170, 189, 621
HgaI GACGC 1 cut(s) 810
HhaI GCGC 1 cut(s) 1369
Hin1II CATG 4 cut(s) 217, 412, 1064, 1272
Hin6I GCGC 1 cut(s) 1367
HinP1I GCGC 1 cut(s) 1367
HinfI GANTC 4 cut(s) 154, 166, 425, 577
HpaII CCGG 3 cut(s) 170, 189, 621
HphI GGTGA 5 cut(s) 149, 478, 826, 891, 1460
Hpy166II GTNNAC 1 cut(s) 924
Hpy188I TCNGA 8 cut(s) 35, 185, 311, 590, 783, 1024, 1416, 1428
Hpy188III TCNNGA 4 cut(s) 111, 1175, 1214, 1325
Hpy8I GTNNAC 1 cut(s) 924
Hpy99I CGWCG 1 cut(s) 103
HpyAV CCTTC 3 cut(s) 267, 606, 949
HpyCH4III ACNGT 3 cut(s) 181, 851, 1423
HpyCH4IV ACGT 2 cut(s) 360, 417
HpyCH4V TGCA 8 cut(s) 329, 482, 986, 1012, 1244, 1314, 1340, 1454
HpyF10VI GCNNNNNNNGC 6 cut(s) 383, 654, 818, 980, 989, 1130
HpyF3I CTNAG 4 cut(s) 660, 1083, 1415, 1427
HpySE526I ACGT 2 cut(s) 360, 417
Hsp92II CATG 4 cut(s) 217, 412, 1064, 1272
HspAI GCGC 1 cut(s) 1367
Kzo9I GATC 9 cut(s) 22, 35, 245, 342, 543, 688, 934, 1411, 1435
LmnI GCTCC 2 cut(s) 259, 793
Lsp1109I GCAGC 5 cut(s) 263, 588, 657, 970, 1024
LweI GCATC 4 cut(s) 704, 754, 1168, 1327
MaeI CTAG 8 cut(s) 534, 756, 825, 927, 975, 1325, 1440, 1492
MaeII ACGT 2 cut(s) 360, 417
MaeIII GTNAC 3 cut(s) 734, 1271, 1442
MalI GATC 9 cut(s) 24, 37, 247, 344, 545, 690, 936, 1413, 1437
MboI GATC 9 cut(s) 22, 35, 245, 342, 543, 688, 934, 1411, 1435
MboII GAAGA 5 cut(s) 72, 79, 220, 1088, 1202
MflI RGATCY 2 cut(s) 245, 1411
MhlI GDGCHC 3 cut(s) 272, 401, 659
MluCI AATT 7 cut(s) 4, 301, 484, 502, 639, 718, 1153
MlyI GAGTC 3 cut(s) 148, 160, 586
MmeI TCCRAC 3 cut(s) 33, 208, 985
MseI TTAA 5 cut(s) 194, 368, 528, 558, 1185
MspA1I CMGCKG 2 cut(s) 648, 1226
MspI CCGG 3 cut(s) 170, 189, 621
MspR9I CCNGG 3 cut(s) 121, 151, 189
Mva1269I GAATGC 1 cut(s) 790
MvaI CCWGG 2 cut(s) 121, 151
MvnI CGCG 1 cut(s) 98
MwoI GCNNNNNNNGC 6 cut(s) 383, 654, 818, 980, 989, 1130
NciI CCSGG 1 cut(s) 189
NcoI CCATGG 2 cut(s) 213, 408
NdeII GATC 9 cut(s) 22, 35, 245, 342, 543, 688, 934, 1411, 1435
NlaIII CATG 4 cut(s) 217, 412, 1064, 1272
NlaIV GGNNCC 1 cut(s) 247
NspV TTCGAA 1 cut(s) 389
PcsI WCGNNNNNNNCGW 1 cut(s) 272
PctI GAATGC 1 cut(s) 790
PfeI GAWTC 1 cut(s) 425
PflMI CCANNNNNTGG 1 cut(s) 150
PfoI TCCNGGA 1 cut(s) 149
PkrI GCNGC 5 cut(s) 253, 603, 647, 985, 1014
PleI GAGTC 3 cut(s) 148, 160, 585
PpsI GAGTC 3 cut(s) 148, 160, 585
PpuMI RGGWCCY 1 cut(s) 593
Psp124BI GAGCTC 2 cut(s) 401, 659
Psp1406I AACGTT 1 cut(s) 360
Psp5II RGGWCCY 1 cut(s) 593
Psp6I CCWGG 2 cut(s) 119, 149
PspFI CCCAGC 2 cut(s) 382, 1112
PspGI CCWGG 2 cut(s) 119, 149
PspN4I GGNNCC 1 cut(s) 247
PspPI GGNCC 3 cut(s) 172, 181, 593
PspPPI RGGWCCY 1 cut(s) 593
PsuI RGATCY 2 cut(s) 245, 1411
PvuII CAGCTG 1 cut(s) 1226
RsaI GTAC 2 cut(s) 1359, 1394
RsaNI GTAC 2 cut(s) 1358, 1393
Rsr2I CGGWCCG 1 cut(s) 181
RsrII CGGWCCG 1 cut(s) 181
SacI GAGCTC 2 cut(s) 401, 659
SaqAI TTAA 5 cut(s) 194, 368, 528, 558, 1185
SatI GCNGC 5 cut(s) 252, 602, 646, 984, 1013
Sau3AI GATC 9 cut(s) 22, 35, 245, 342, 543, 688, 934, 1411, 1435
Sau96I GGNCC 3 cut(s) 172, 181, 593
SchI GAGTC 3 cut(s) 148, 160, 586
ScrFI CCNGG 3 cut(s) 121, 151, 189
SduI GDGCHC 3 cut(s) 272, 401, 659
SfaNI GCATC 4 cut(s) 704, 754, 1168, 1327
SfcI CTRYAG 1 cut(s) 1203
SfuI TTCGAA 1 cut(s) 389
SinI GGWCC 2 cut(s) 181, 593
SmlI CTYRAG 2 cut(s) 1088, 1214
SmoI CTYRAG 2 cut(s) 1088, 1214
SpeI ACTAGT 2 cut(s) 533, 926
Sse9I AATT 7 cut(s) 4, 301, 484, 502, 639, 718, 1153
SsiI CCGC 6 cut(s) 96, 117, 249, 281, 648, 1471
SspMI CTAG 8 cut(s) 534, 756, 825, 927, 975, 1325, 1440, 1492
SstI GAGCTC 2 cut(s) 401, 659
StyD4I CCNGG 3 cut(s) 119, 149, 187
StyI CCWWGG 2 cut(s) 213, 408
TaaI ACNGT 3 cut(s) 181, 851, 1423
TaiI ACGT 2 cut(s) 363, 420
TaqI TCGA 9 cut(s) 15, 21, 38, 266, 389, 725, 839, 942, 1076
TasI AATT 7 cut(s) 4, 301, 484, 502, 639, 718, 1153
TatI WGTACW 1 cut(s) 1392
TfiI GAWTC 1 cut(s) 425
Tru1I TTAA 5 cut(s) 194, 368, 528, 558, 1185
Tru9I TTAA 5 cut(s) 194, 368, 528, 558, 1185
TscAI CASTG 2 cut(s) 457, 814
TseI GCWGC 5 cut(s) 251, 601, 645, 983, 1012
TspDTI ATGAA 4 cut(s) 17, 711, 1257, 1392
TspRI CASTG 2 cut(s) 457, 814
Van91I CCANNNNNTGG 1 cut(s) 150
VpaK11BI GGWCC 2 cut(s) 181, 593
XapI RAATTY 4 cut(s) 4, 301, 502, 718
XbaI TCTAGA 1 cut(s) 1324
XcmI CCANNNNNNNNNTGG 1 cut(s) 415
XmiI GTMKAC 1 cut(s) 923
XspI CTAG 8 cut(s) 534, 756, 825, 927, 975, 1325, 1440, 1492
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.