Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr13

Orthogroup ID

OG0008706

Physical Location & Seq

Genomic Coordinates Reverse (-)

12850691 .. 12852953

Gene Structure 2263 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD13G1163500.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 783 bp

ATGGGTAGTGCTAGTGTTGGTGGCACTGGATTGAGCTCTAAGAAAGACCTTTTTGGTTCTTTGGTGAATCTCACATCGAAACCATCTGCTACTATTAACTCAGCGAGTAAAACTAGTGATAAAAGTAGTGTTGGTGATGCTTTTGGAGATTTTCGGAATGCTCCGAAACCAAGCACCACCAATACTACATCAGCCTCGAGTGCCTTCTCAGATAGCAGTTTTATGGGATCAGATTCGGATTCTGGCTTTGGGGATTTTGGGGTTTCGGCGAAGCCAACCCCTGCTCAATCTACTAGCAATGATCCCTTCGGCGTGTTGTTTACCCCATCTTCAGAGTTTGGAGGAGGACATGATGACGGTGGTTCAACAACTGAGCTTGAGGGTCTTCCACCTTCTCCTGCTGGGGTGTCAGCCTCAACAGCAAAGAATAAAGGAATGGATAATTACAAGCAAGGGCAGTATCCTGATGCTATTAAATGGCTTTCTTGGGCTATTATTCTTCTTGAGAAATCAGCTGATAGTGCTGGCGTTGCAGATGTCTTATCAAGTAGGGCTTCATGTTACAAAGAAGTAAGGGAGTATAAGAAAGCTGTGGCAGACTGCACAAAGGTTCTTGATAAAGATGAAGCAAATGTATCTGTTCTGGTACAGCGTGCGCTCTTGTACGAAAGTATGGAAAAGTACAGACTTGGGGCAGAAGATCTTAGGACTGTTCTGAAGTTTGATCCTGGTAACAGGGTTGCAAGAAGCACCATTCACCGCTTGCAGAAATTGGCAGACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000226 GO:0001578 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006996 GO:0007010 GO:0007017 GO:0008150 GO:0009987 GO:0016043 GO:0022607 GO:0030030 GO:0030031 GO:0034622 GO:0035082 GO:0043933 GO:0044085 GO:0044424 GO:0044444 GO:0044464 GO:0044782 GO:0060271 GO:0065003 GO:0070286 GO:0070925 GO:0071840 GO:0120031 GO:0120036

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

TPR_8

Protein Analysis

261

Amino Acids

27.27

Weight (kDa)

5.8

Isoelectric Point (pI)

34.88

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008706)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G16760 AT3G16760
fragaria_vesca	FvH4_2g05641 FvH4_4g18770 FvH4_4g18770 FvH4_5g32471 FvH4_5g32480
malus_domestica	MD13G1163500.v1.1 MD16G1163000.v1.1
prunus_persica	Prupe.1G130400_v2.0.a1
pyrus_communis	pycom13g13930 pycom16g13810
rosa_chinensis	RchiOBHm_Chr4g0423561
rosa_laevigata	RLG00000007547
rosa_multiflora	Rmu_sc0004342.1_g000013 Rmu_sc0008281.1_g000006
rosa_roxburghii	Rroxscaffold_5G00365790
rosa_rugosa	Rorug04G0188700
rosa_samantha	Rh4AG248200 Rh4BG253400 Rh4CG261500 Rh4DG248700
rosa_wichuraiana	Rw4G021260

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	760
AclWI	GGATC	3 cut(s)	235, 296, 719
AcuI	CTGAAG	2 cut(s)	315, 737
AfaI	GTAC	3 cut(s)	648, 665, 683
AgsI	TTSAA	1 cut(s)	366
AhlI	ACTAGT	1 cut(s)	113
AjnI	CCWGG	1 cut(s)	727
AluBI	AGCT	4 cut(s)	36, 376, 515, 590
AluI	AGCT	4 cut(s)	36, 376, 515, 590
Alw21I	GWGCWC	1 cut(s)	38
AlwI	GGATC	3 cut(s)	235, 296, 719
Ama87I	CYCGRG	1 cut(s)	196
AspLEI	GCGC	1 cut(s)	658
AsuHPI	GGTGA	3 cut(s)	76, 146, 749
AvaI	CYCGRG	1 cut(s)	196
BanII	GRGCYC	1 cut(s)	38
BbsI	GAAGAC	1 cut(s)	377
Bbv12I	GWGCWC	1 cut(s)	38
BccI	CCATC	2 cut(s)	91, 334
BciT130I	CCWGG	1 cut(s)	729
BciVI	GTATCC	1 cut(s)	471
BcuI	ACTAGT	1 cut(s)	113
BfaI	CTAG	4 cut(s)	12, 114, 294, 781
BfuI	GTATCC	1 cut(s)	471
BglII	AGATCT	1 cut(s)	700
Bme1390I	CCNGG	1 cut(s)	729
BmeT110I	CYCGRG	1 cut(s)	196
BmrFI	CCNGG	1 cut(s)	729
BmsI	GCATC	2 cut(s)	127, 457
BpiI	GAAGAC	1 cut(s)	377
BpuEI	CTTGAG	2 cut(s)	398, 524
Bse1I	ACTGG	1 cut(s)	31
Bse3DI	GCAATG	1 cut(s)	304
BseBI	CCWGG	1 cut(s)	729
BseMI	GCAATG	1 cut(s)	304
BseMII	CTCAG	3 cut(s)	114, 222, 363
BseNI	ACTGG	1 cut(s)	31
BseRI	GAGGAG	1 cut(s)	357
BseYI	CCCAGC	1 cut(s)	401
BsgI	GTGCAG	1 cut(s)	586
BsiHKAI	GWGCWC	1 cut(s)	38
BsiHKCI	CYCGRG	1 cut(s)	196
BsmI	GAATGC	1 cut(s)	163
BsoBI	CYCGRG	1 cut(s)	196
Bsp1286I	GDGCHC	1 cut(s)	38
Bsp143I	GATC	4 cut(s)	227, 301, 700, 724
BspACI	CCGC	1 cut(s)	760
BspCNI	CTCAG	3 cut(s)	113, 221, 364
BspPI	GGATC	3 cut(s)	235, 296, 719
BsrDI	GCAATG	1 cut(s)	304
BsrI	ACTGG	1 cut(s)	31
BssMI	GATC	4 cut(s)	227, 301, 700, 724
Bst2UI	CCWGG	1 cut(s)	729
Bst4CI	ACNGT	2 cut(s)	359, 712
BstC8I	GCNNGC	3 cut(s)	526, 654, 764
BstDEI	CTNAG	5 cut(s)	39, 100, 208, 372, 704
BstHHI	GCGC	1 cut(s)	658
BstKTI	GATC	4 cut(s)	230, 304, 703, 727
BstMBI	GATC	4 cut(s)	227, 301, 700, 724
BstMWI	GCNNNNNNNGC	4 cut(s)	200, 419, 521, 530
BstNI	CCWGG	1 cut(s)	729
BstSCI	CCNGG	1 cut(s)	727
BstV2I	GAAGAC	1 cut(s)	377
BstX2I	RGATCY	1 cut(s)	700
BstYI	RGATCY	1 cut(s)	700
BsuI	GTATCC	1 cut(s)	471
BtsIMutI	CAGTG	1 cut(s)	24
Cac8I	GCNNGC	3 cut(s)	526, 654, 764
CfoI	GCGC	1 cut(s)	658
Csp6I	GTAC	3 cut(s)	647, 664, 682
CviAII	CATG	2 cut(s)	350, 558
CviQI	GTAC	3 cut(s)	647, 664, 682
DdeI	CTNAG	5 cut(s)	39, 100, 208, 372, 704
DpnI	GATC	4 cut(s)	229, 303, 702, 726
DpnII	GATC	4 cut(s)	227, 301, 700, 724
Ecl136II	GAGCTC	1 cut(s)	36
Eco24I	GRGCYC	1 cut(s)	38
Eco53kI	GAGCTC	1 cut(s)	36
Eco57I	CTGAAG	2 cut(s)	315, 737
Eco88I	CYCGRG	1 cut(s)	196
EcoICRI	GAGCTC	1 cut(s)	36
EcoRII	CCWGG	1 cut(s)	727
EcoT38I	GRGCYC	1 cut(s)	38
FaeI	CATG	2 cut(s)	353, 561
FaiI	YATR	5 cut(s)	224, 351, 559, 582, 674
FalI	AAGNNNNNCTT	2 cut(s)	538, 570
FatI	CATG	2 cut(s)	349, 557
FriOI	GRGCYC	1 cut(s)	38
FspBI	CTAG	4 cut(s)	12, 114, 294, 781
GlaI	GCGC	1 cut(s)	657
GsaI	CCCAGC	1 cut(s)	405
HhaI	GCGC	1 cut(s)	658
Hin1II	CATG	2 cut(s)	353, 561
Hin6I	GCGC	1 cut(s)	656
HinP1I	GCGC	1 cut(s)	656
HinfI	GANTC	3 cut(s)	67, 233, 239
HphI	GGTGA	3 cut(s)	76, 146, 749
Hpy166II	GTNNAC	1 cut(s)	321
Hpy188I	TCNGA	7 cut(s)	156, 165, 211, 232, 238, 334, 717
Hpy188III	TCNNGA	3 cut(s)	464, 503, 614
Hpy8I	GTNNAC	1 cut(s)	321
HpyAV	CCTTC	3 cut(s)	214, 316, 402
HpyCH4III	ACNGT	2 cut(s)	359, 712
HpyCH4V	TGCA	4 cut(s)	533, 603, 743, 766
HpyF10VI	GCNNNNNNNGC	4 cut(s)	200, 419, 521, 530
HpyF3I	CTNAG	5 cut(s)	39, 100, 208, 372, 704
Hsp92II	CATG	2 cut(s)	353, 561
HspAI	GCGC	1 cut(s)	656
Kzo9I	GATC	4 cut(s)	227, 301, 700, 724
LmnI	GCTCC	1 cut(s)	166
LweI	GCATC	2 cut(s)	127, 457
MaeI	CTAG	4 cut(s)	12, 114, 294, 781
MaeIII	GTNAC	2 cut(s)	560, 731
MalI	GATC	4 cut(s)	229, 303, 702, 726
MboI	GATC	4 cut(s)	227, 301, 700, 724
MboII	GAAGA	4 cut(s)	321, 377, 491, 710
MflI	RGATCY	1 cut(s)	700
MhlI	GDGCHC	1 cut(s)	38
MluCI	AATT	2 cut(s)	442, 770
MnlI	CCTC	5 cut(s)	205, 335, 338, 373, 424
MseI	TTAA	2 cut(s)	96, 474
MspA1I	CMGCKG	1 cut(s)	515
MspR9I	CCNGG	1 cut(s)	729
Mva1269I	GAATGC	1 cut(s)	163
MvaI	CCWGG	1 cut(s)	729
MwoI	GCNNNNNNNGC	4 cut(s)	200, 419, 521, 530
NdeII	GATC	4 cut(s)	227, 301, 700, 724
NlaIII	CATG	2 cut(s)	353, 561
PaeR7I	CTCGAG	1 cut(s)	196
PctI	GAATGC	1 cut(s)	163
PfeI	GAWTC	3 cut(s)	67, 233, 239
Psp124BI	GAGCTC	1 cut(s)	38
Psp6I	CCWGG	1 cut(s)	727
PspFI	CCCAGC	1 cut(s)	401
PspGI	CCWGG	1 cut(s)	727
PspXI	VCTCGAGB	1 cut(s)	196
PsuI	RGATCY	1 cut(s)	700
PvuII	CAGCTG	1 cut(s)	515
RsaI	GTAC	3 cut(s)	648, 665, 683
RsaNI	GTAC	3 cut(s)	647, 664, 682
SacI	GAGCTC	1 cut(s)	38
SaqAI	TTAA	2 cut(s)	96, 474
Sau3AI	GATC	4 cut(s)	227, 301, 700, 724
ScrFI	CCNGG	1 cut(s)	729
SduI	GDGCHC	1 cut(s)	38
SetI	ASST	7 cut(s)	38, 51, 378, 394, 517, 592, 612
SfaNI	GCATC	2 cut(s)	127, 457
Sfr274I	CTCGAG	1 cut(s)	196
SlaI	CTCGAG	1 cut(s)	196
SmlI	CTYRAG	3 cut(s)	196, 377, 503
SmoI	CTYRAG	3 cut(s)	196, 377, 503
SpeI	ACTAGT	1 cut(s)	113
Sse9I	AATT	2 cut(s)	442, 770
SsiI	CCGC	1 cut(s)	760
SspMI	CTAG	4 cut(s)	12, 114, 294, 781
SstI	GAGCTC	1 cut(s)	38
StyD4I	CCNGG	1 cut(s)	727
TaaI	ACNGT	2 cut(s)	359, 712
TaqI	TCGA	2 cut(s)	77, 197
TasI	AATT	2 cut(s)	442, 770
TatI	WGTACW	1 cut(s)	681
TfiI	GAWTC	3 cut(s)	67, 233, 239
Tru1I	TTAA	2 cut(s)	96, 474
Tru9I	TTAA	2 cut(s)	96, 474
TscAI	CASTG	1 cut(s)	31
TspDTI	ATGAA	2 cut(s)	546, 639
TspRI	CASTG	1 cut(s)	31
XhoI	CTCGAG	1 cut(s)	196
XspI	CTAG	4 cut(s)	12, 114, 294, 781

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.