Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb5

Orthogroup ID

OG0008706

Physical Location & Seq

Genomic Coordinates Forward (+)

23443877 .. 23444197

Gene Structure 321 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_5g32480.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 321 bp

ATGGTCGGCGATATCTTCGGCAAGAGCTGGGCCTCCACCGCCCCTTCGGTCTCCACCACTCCGATCGCCGTCGTCAACAAGAACCCCAATCTCTTCGGCGATTTGGTCAGCTCTGCCATGGGCGGTAAGGTCAGCAGCACTAATGTTCCTCTCAAAAATGCAACTCTAACATCGAATAAGAGCTCGTTTTCGATGGGAAATGTGGCTGATTCGTTGCCCAAATCCACGGCGGGTGCTAGTTCCGGCCAGGGACGTATCAATTGGGGTGGTTCTGGTCGTAGAAGGAGTAGATTCGGAATTTCAAGTATGAGAAAGAGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000226 GO:0001578 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006996 GO:0007010 GO:0007017 GO:0008150 GO:0009987 GO:0016043 GO:0022607 GO:0030030 GO:0030031 GO:0034622 GO:0035082 GO:0043933 GO:0044085 GO:0044424 GO:0044444 GO:0044464 GO:0044782 GO:0060271 GO:0065003 GO:0070286 GO:0070925 GO:0071840 GO:0120031 GO:0120036

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

TPR_8

Protein Analysis

107

Amino Acids

10.94

Weight (kDa)

11.9

Isoelectric Point (pI)

41.73

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0008706)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G16760 AT3G16760
fragaria_vesca	FvH4_2g05641 FvH4_4g18770 FvH4_4g18770 FvH4_5g32471 FvH4_5g32480
malus_domestica	MD13G1163500.v1.1 MD16G1163000.v1.1
prunus_persica	Prupe.1G130400_v2.0.a1
pyrus_communis	pycom13g13930 pycom16g13810
rosa_chinensis	RchiOBHm_Chr4g0423561
rosa_laevigata	RLG00000007547
rosa_multiflora	Rmu_sc0004342.1_g000013 Rmu_sc0008281.1_g000006
rosa_roxburghii	Rroxscaffold_5G00365790
rosa_rugosa	Rorug04G0188700
rosa_samantha	Rh4AG248200 Rh4BG253400 Rh4CG261500 Rh4DG248700
rosa_wichuraiana	Rw4G021260

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	3 cut(s)	39, 123, 230
AcoI	YGGCCR	1 cut(s)	244
AcsI	RAATTY	1 cut(s)	297
AgsI	TTSAA	1 cut(s)	303
AjnI	CCWGG	1 cut(s)	246
AluBI	AGCT	3 cut(s)	27, 111, 183
AluI	AGCT	3 cut(s)	27, 111, 183
Alw21I	GWGCWC	1 cut(s)	185
Alw26I	GTCTC	1 cut(s)	55
AoxI	GGCC	2 cut(s)	30, 244
ApeKI	GCWGC	1 cut(s)	135
ApoI	RAATTY	1 cut(s)	297
AspS9I	GGNCC	1 cut(s)	30
BanII	GRGCYC	1 cut(s)	185
Bbv12I	GWGCWC	1 cut(s)	185
BbvI	GCAGC	1 cut(s)	147
BccI	CCATC	1 cut(s)	187
BceAI	ACGGC	2 cut(s)	53, 243
BciT130I	CCWGG	1 cut(s)	248
BcoDI	GTCTC	1 cut(s)	55
BfaI	CTAG	1 cut(s)	237
BisI	GCNGC	1 cut(s)	136
BlsI	GCNGC	1 cut(s)	137
Bme1390I	CCNGG	1 cut(s)	248
BmgT120I	GGNCC	1 cut(s)	30
BmrFI	CCNGG	1 cut(s)	248
BsaI	GGTCTC	1 cut(s)	55
BsaJI	CCNNGG	3 cut(s)	117, 225, 247
BseBI	CCWGG	1 cut(s)	248
BseDI	CCNNGG	3 cut(s)	117, 225, 247
BseXI	GCAGC	1 cut(s)	147
BseYI	CCCAGC	1 cut(s)	27
Bsh1285I	CGRYCG	1 cut(s)	66
BshFI	GGCC	2 cut(s)	32, 246
BsiEI	CGRYCG	1 cut(s)	66
BsiHKAI	GWGCWC	1 cut(s)	185
BsiSI	CCGG	1 cut(s)	243
BslFI	GGGAC	1 cut(s)	264
BsmAI	GTCTC	1 cut(s)	55
BsmFI	GGGAC	1 cut(s)	264
BsnI	GGCC	2 cut(s)	32, 246
Bso31I	GGTCTC	1 cut(s)	55
Bsp1286I	GDGCHC	1 cut(s)	185
Bsp143I	GATC	1 cut(s)	63
Bsp19I	CCATGG	1 cut(s)	117
BspACI	CCGC	3 cut(s)	39, 123, 230
BspANI	GGCC	2 cut(s)	32, 246
BspTNI	GGTCTC	1 cut(s)	55
BssECI	CCNNGG	3 cut(s)	117, 225, 247
BssMI	GATC	1 cut(s)	63
BssT1I	CCWWGG	1 cut(s)	117
Bst2UI	CCWGG	1 cut(s)	248
Bst6I	CTCTTC	1 cut(s)	98
BstDSI	CCRYGG	2 cut(s)	117, 225
BstKTI	GATC	1 cut(s)	66
BstMAI	GTCTC	1 cut(s)	55
BstMBI	GATC	1 cut(s)	63
BstMCI	CGRYCG	1 cut(s)	66
BstMWI	GCNNNNNNNGC	1 cut(s)	38
BstNI	CCWGG	1 cut(s)	248
BstSCI	CCNGG	1 cut(s)	246
BstV1I	GCAGC	1 cut(s)	147
BsuRI	GGCC	2 cut(s)	32, 246
BtgI	CCRYGG	2 cut(s)	117, 225
Cfr13I	GGNCC	1 cut(s)	30
CspCI	CAANNNNNGTGG	2 cut(s)	247, 282
CviAII	CATG	1 cut(s)	118
CviJI	RGCY	6 cut(s)	27, 32, 111, 183, 206, 246
CviKI_1	RGCY	6 cut(s)	27, 32, 111, 183, 206, 246
DpnI	GATC	1 cut(s)	65
DpnII	GATC	1 cut(s)	63
EaeI	YGGCCR	1 cut(s)	244
Eam1104I	CTCTTC	1 cut(s)	98
EarI	CTCTTC	1 cut(s)	98
Ecl136II	GAGCTC	1 cut(s)	183
Eco130I	CCWWGG	1 cut(s)	117
Eco24I	GRGCYC	1 cut(s)	185
Eco31I	GGTCTC	1 cut(s)	55
Eco32I	GATATC	1 cut(s)	13
Eco53kI	GAGCTC	1 cut(s)	183
EcoICRI	GAGCTC	1 cut(s)	183
EcoRII	CCWGG	1 cut(s)	246
EcoRV	GATATC	1 cut(s)	13
EcoT14I	CCWWGG	1 cut(s)	117
EcoT38I	GRGCYC	1 cut(s)	185
ErhI	CCWWGG	1 cut(s)	117
FaeI	CATG	1 cut(s)	121
FaiI	YATR	2 cut(s)	119, 308
FaqI	GGGAC	1 cut(s)	264
FatI	CATG	1 cut(s)	117
FauI	CCCGC	1 cut(s)	223
Fnu4HI	GCNGC	1 cut(s)	136
FriOI	GRGCYC	1 cut(s)	185
Fsp4HI	GCNGC	1 cut(s)	136
FspBI	CTAG	1 cut(s)	237
GluI	GCNGC	1 cut(s)	136
GsaI	CCCAGC	1 cut(s)	31
HaeIII	GGCC	2 cut(s)	32, 246
HapII	CCGG	1 cut(s)	243
Hin1II	CATG	1 cut(s)	121
HincII	GTYRAC	1 cut(s)	76
HindII	GTYRAC	1 cut(s)	76
HinfI	GANTC	2 cut(s)	209, 291
HpaII	CCGG	1 cut(s)	243
Hpy166II	GTNNAC	1 cut(s)	76
Hpy188I	TCNGA	2 cut(s)	63, 296
Hpy8I	GTNNAC	1 cut(s)	76
Hpy99I	CGWCG	1 cut(s)	74
HpyAV	CCTTC	2 cut(s)	54, 276
HpyCH4IV	ACGT	1 cut(s)	253
HpyCH4V	TGCA	1 cut(s)	161
HpyF10VI	GCNNNNNNNGC	1 cut(s)	38
HpySE526I	ACGT	1 cut(s)	253
Hsp92II	CATG	1 cut(s)	121
Kzo9I	GATC	1 cut(s)	63
LpnPI	CCDG	5 cut(s)	13, 233, 256, 258, 260
Lsp1109I	GCAGC	1 cut(s)	147
MaeI	CTAG	1 cut(s)	237
MaeII	ACGT	1 cut(s)	253
MalI	GATC	1 cut(s)	65
MboI	GATC	1 cut(s)	63
MboII	GAAGA	2 cut(s)	7, 85
MfeI	CAATTG	1 cut(s)	259
MhlI	GDGCHC	1 cut(s)	185
MluCI	AATT	2 cut(s)	259, 297
MnlI	CCTC	3 cut(s)	43, 159, 309
MspI	CCGG	1 cut(s)	243
MspR9I	CCNGG	1 cut(s)	248
MunI	CAATTG	1 cut(s)	259
MvaI	CCWGG	1 cut(s)	248
MwoI	GCNNNNNNNGC	1 cut(s)	38
NcoI	CCATGG	1 cut(s)	117
NdeII	GATC	1 cut(s)	63
NlaIII	CATG	1 cut(s)	121
PfeI	GAWTC	2 cut(s)	209, 291
PkrI	GCNGC	1 cut(s)	137
Ple19I	CGATCG	1 cut(s)	66
Psp124BI	GAGCTC	1 cut(s)	185
Psp6I	CCWGG	1 cut(s)	246
PspFI	CCCAGC	1 cut(s)	27
PspGI	CCWGG	1 cut(s)	246
PspPI	GGNCC	1 cut(s)	30
PvuI	CGATCG	1 cut(s)	66
SacI	GAGCTC	1 cut(s)	185
SatI	GCNGC	1 cut(s)	136
Sau3AI	GATC	1 cut(s)	63
Sau96I	GGNCC	1 cut(s)	30
ScrFI	CCNGG	1 cut(s)	248
SduI	GDGCHC	1 cut(s)	185
SetI	ASST	6 cut(s)	29, 113, 132, 185, 256, 320
Sse9I	AATT	2 cut(s)	259, 297
SsiI	CCGC	3 cut(s)	39, 123, 230
SspMI	CTAG	1 cut(s)	237
SstI	GAGCTC	1 cut(s)	185
StyD4I	CCNGG	1 cut(s)	246
StyI	CCWWGG	1 cut(s)	117
TaiI	ACGT	1 cut(s)	256
TaqI	TCGA	2 cut(s)	173, 191
TaqII	GACCGA	1 cut(s)	37
TasI	AATT	2 cut(s)	259, 297
TfiI	GAWTC	2 cut(s)	209, 291
TseI	GCWGC	1 cut(s)	135
XapI	RAATTY	1 cut(s)	297
XspI	CTAG	1 cut(s)	237

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.