AT3G17210

Stress responsive A/B Barrel Domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
3
OG0004131
Physical Location & Seq
Forward (+)
5881919 .. 5883200
1282 bp
Loading structure...
UTR
Exon/CDS
Intron
AT3G17210.2

Sequence Viewer

Length: 330 bp
ATGGAGGAAGCAAAGGGACCTGTGAAGCACGTATTGCTTGCTAGTTTCAAAGATGGGGTTAGTCCTGAGAAAATCGAAGAGCTCATCAAAGGTTACGCCAATCTCGTCAATCTCATCGAACCTATGAAAGCTTTCCACTGGGGAAAAGATGTGAGCATTGAGAATCTGCATCAAGGTTACACACACATCTTTGAATCCACATTTGAGAGTAAAGAAGCTGTTGCAGAGTACATTGCTCATCCTGCTCACGTTGAATTCGCCACCATCTTCCTTGGCAGCTTGGATAAAGTTTTGGTTATTGACTACAAGCCTACCTCTGTCTCTCTCTAA

Protein Analysis

109

Amino Acids

12.18

Weight (kDa)

5.42

Isoelectric Point (pI)

35.93

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Dabb PF07876 8 - 103 3.6e-30 Stress responsive A/B Barrel Domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcsI RAATTY 1 cut(s) 254
AfaI GTAC 1 cut(s) 230
AgsI TTSAA 3 cut(s) 49, 194, 254
AluBI AGCT 4 cut(s) 82, 131, 218, 279
AluI AGCT 4 cut(s) 82, 131, 218, 279
Alw21I GWGCWC 1 cut(s) 84
Alw26I GTCTC 1 cut(s) 325
ApeKI GCWGC 1 cut(s) 276
ApoI RAATTY 1 cut(s) 254
Asp700I GAANNNNTTC 1 cut(s) 131
AspS9I GGNCC 1 cut(s) 17
AvaII GGWCC 1 cut(s) 17
BanII GRGCYC 1 cut(s) 84
Bbv12I GWGCWC 1 cut(s) 84
BbvI GCAGC 1 cut(s) 288
BccI CCATC 2 cut(s) 47, 272
BcoDI GTCTC 1 cut(s) 325
BfaI CTAG 1 cut(s) 42
BisI GCNGC 1 cut(s) 277
BlsI GCNGC 1 cut(s) 278
Bme18I GGWCC 1 cut(s) 17
BmgT120I GGNCC 1 cut(s) 17
BmiI GGNNCC 1 cut(s) 18
BmrI ACTGGG 1 cut(s) 148
BmsI GCATC 1 cut(s) 178
BmuI ACTGGG 1 cut(s) 148
BsaAI YACGTR 1 cut(s) 31
BsaJI CCNNGG 1 cut(s) 271
Bse1I ACTGG 1 cut(s) 143
Bse3DI GCAATG 1 cut(s) 231
BseDI CCNNGG 1 cut(s) 271
BseGI GGATG 1 cut(s) 238
BseMI GCAATG 1 cut(s) 231
BseMII CTCAG 1 cut(s) 57
BseNI ACTGG 1 cut(s) 143
BseXI GCAGC 1 cut(s) 288
BsiHKAI GWGCWC 1 cut(s) 84
BslFI GGGAC 1 cut(s) 30
BsmAI GTCTC 1 cut(s) 325
BsmFI GGGAC 1 cut(s) 30
Bsp1286I GDGCHC 1 cut(s) 84
BspCNI CTCAG 1 cut(s) 58
BspLI GGNNCC 1 cut(s) 18
BspQI GCTCTTC 1 cut(s) 72
BsrDI GCAATG 1 cut(s) 231
BsrI ACTGG 1 cut(s) 143
BssECI CCNNGG 1 cut(s) 271
BssT1I CCWWGG 1 cut(s) 271
Bst6I CTCTTC 1 cut(s) 72
BstAPI GCANNNNNTGC 1 cut(s) 34
BstBAI YACGTR 1 cut(s) 31
BstC8I GCNNGC 1 cut(s) 39
BstDEI CTNAG 1 cut(s) 66
BstF5I GGATG 1 cut(s) 238
BstMAI GTCTC 1 cut(s) 325
BstMWI GCNNNNNNNGC 2 cut(s) 34, 242
BstV1I GCAGC 1 cut(s) 288
BtsCI GGATG 1 cut(s) 238
BtsIMutI CAGTG 1 cut(s) 136
Cac8I GCNNGC 1 cut(s) 39
Cfr13I GGNCC 1 cut(s) 17
Csp6I GTAC 1 cut(s) 229
CviJI RGCY 5 cut(s) 82, 131, 218, 279, 310
CviKI_1 RGCY 5 cut(s) 82, 131, 218, 279, 310
CviQI GTAC 1 cut(s) 229
DdeI CTNAG 1 cut(s) 66
Eam1104I CTCTTC 1 cut(s) 72
EarI CTCTTC 1 cut(s) 72
Ecl136II GAGCTC 1 cut(s) 82
Eco130I CCWWGG 1 cut(s) 271
Eco24I GRGCYC 1 cut(s) 84
Eco47I GGWCC 1 cut(s) 17
Eco53kI GAGCTC 1 cut(s) 82
EcoICRI GAGCTC 1 cut(s) 82
EcoO109I RGGNCCY 1 cut(s) 17
EcoRI GAATTC 1 cut(s) 254
EcoT14I CCWWGG 1 cut(s) 271
EcoT38I GRGCYC 1 cut(s) 84
ErhI CCWWGG 1 cut(s) 271
FaiI YATR 1 cut(s) 125
FaqI GGGAC 1 cut(s) 30
Fnu4HI GCNGC 1 cut(s) 277
FokI GGATG 1 cut(s) 225
FriOI GRGCYC 1 cut(s) 84
Fsp4HI GCNGC 1 cut(s) 277
FspBI CTAG 1 cut(s) 42
GluI GCNGC 1 cut(s) 277
HindIII AAGCTT 1 cut(s) 129
HinfI GANTC 2 cut(s) 163, 194
Hpy188III TCNNGA 1 cut(s) 65
HpyCH4IV ACGT 2 cut(s) 30, 249
HpyCH4V TGCA 2 cut(s) 169, 224
HpyF10VI GCNNNNNNNGC 2 cut(s) 34, 242
HpyF3I CTNAG 1 cut(s) 66
HpySE526I ACGT 2 cut(s) 30, 249
LguI GCTCTTC 1 cut(s) 72
LpnPI CCDG 4 cut(s) 33, 78, 124, 255
Lsp1109I GCAGC 1 cut(s) 288
LweI GCATC 1 cut(s) 178
MaeI CTAG 1 cut(s) 42
MaeII ACGT 2 cut(s) 30, 249
MaeIII GTNAC 2 cut(s) 92, 176
MboII GAAGA 2 cut(s) 89, 259
MhlI GDGCHC 1 cut(s) 84
MluCI AATT 1 cut(s) 254
MnlI CCTC 1 cut(s) 325
MroXI GAANNNNTTC 1 cut(s) 131
MwoI GCNNNNNNNGC 2 cut(s) 34, 242
NlaIV GGNNCC 1 cut(s) 18
PciSI GCTCTTC 1 cut(s) 72
PcsI WCGNNNNNNNCGW 1 cut(s) 102
PdmI GAANNNNTTC 1 cut(s) 131
PfeI GAWTC 2 cut(s) 163, 194
PkrI GCNGC 1 cut(s) 278
Ppu21I YACGTR 1 cut(s) 31
PpuMI RGGWCCY 1 cut(s) 17
Psp124BI GAGCTC 1 cut(s) 84
Psp5II RGGWCCY 1 cut(s) 17
PspN4I GGNNCC 1 cut(s) 18
PspPI GGNCC 1 cut(s) 17
PspPPI RGGWCCY 1 cut(s) 17
RsaI GTAC 1 cut(s) 230
RsaNI GTAC 1 cut(s) 229
SacI GAGCTC 1 cut(s) 84
SapI GCTCTTC 1 cut(s) 72
SatI GCNGC 1 cut(s) 277
Sau96I GGNCC 1 cut(s) 17
SduI GDGCHC 1 cut(s) 84
SfaNI GCATC 1 cut(s) 178
SinI GGWCC 1 cut(s) 17
Sse9I AATT 1 cut(s) 254
SspMI CTAG 1 cut(s) 42
SstI GAGCTC 1 cut(s) 84
StyI CCWWGG 1 cut(s) 271
TaiI ACGT 2 cut(s) 33, 252
TaqI TCGA 2 cut(s) 75, 117
TasI AATT 1 cut(s) 254
TatI WGTACW 1 cut(s) 228
TfiI GAWTC 2 cut(s) 163, 194
TscAI CASTG 1 cut(s) 143
TseI GCWGC 1 cut(s) 276
TspDTI ATGAA 1 cut(s) 140
TspRI CASTG 1 cut(s) 143
VpaK11BI GGWCC 1 cut(s) 17
XapI RAATTY 1 cut(s) 254
XmnI GAANNNNTTC 1 cut(s) 131
XspI CTAG 1 cut(s) 42
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.