Rh1AG159200

Probable protein Pop3

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1A
OG0004131
Physical Location & Seq
Reverse (-)
30183593 .. 30184655
1063 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1AG159200.1

Sequence Viewer

Length: 330 bp
ATGGAGGAAGCGAAGGGAGTGGTGAAGCATGTATTGTTAGCCGAGTTCAAGGAAGGAGTGACTGAGTCGGAGATTGAGCAACTCATCAGAGGCTTTGCCAACCTCGTCAATCTCATTGATCCCATGGAGTCCTTCCACTGGGGAAAGGACGTGAGCATTGAGAACCTGCATCAAGGTTTCACTCATATCTTTGAGTCCAGCTTTAAGAGTAATGAGGCTGTTGCGGAGTATCTAGCTCATCCTGCCCATGTTGATTTTGCAAACTTGTTCCGTCCCCATGTGGAGAAAGTCCTTGTGTTTGATTACAAACCCACTACAGTTCGTGTCTGA

Protein Analysis

109

Amino Acids

12.45

Weight (kDa)

5.4

Isoelectric Point (pI)

30.39

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Dabb PF07876 8 - 103 9.4e-30 Stress responsive A/B Barrel Domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 174
AciI CCGC 1 cut(s) 224
AclWI GGATC 1 cut(s) 113
AfiI CCNNNNNNNGG 1 cut(s) 138
AgsI TTSAA 1 cut(s) 49
AjiI CACGTC 1 cut(s) 151
AluBI AGCT 2 cut(s) 201, 236
AluI AGCT 2 cut(s) 201, 236
AlwI GGATC 1 cut(s) 113
AsuHPI GGTGA 1 cut(s) 34
BfaI CTAG 1 cut(s) 233
BfmI CTRYAG 1 cut(s) 315
BfuAI ACCTGC 1 cut(s) 174
BmgBI CACGTC 1 cut(s) 151
BmrI ACTGGG 1 cut(s) 148
BmsI GCATC 1 cut(s) 178
BmuI ACTGGG 1 cut(s) 148
BsaJI CCNNGG 1 cut(s) 123
Bsc4I CCNNNNNNNGG 1 cut(s) 138
Bse1I ACTGG 1 cut(s) 143
BseDI CCNNGG 1 cut(s) 123
BseGI GGATG 1 cut(s) 238
BseLI CCNNNNNNNGG 1 cut(s) 138
BseMII CTCAG 1 cut(s) 54
BseNI ACTGG 1 cut(s) 143
BslFI GGGAC 1 cut(s) 258
BslI CCNNNNNNNGG 1 cut(s) 138
BsmFI GGGAC 1 cut(s) 258
Bsp143I GATC 1 cut(s) 118
Bsp19I CCATGG 1 cut(s) 123
BspACI CCGC 1 cut(s) 224
BspCNI CTCAG 1 cut(s) 55
BspMI ACCTGC 1 cut(s) 174
BspPI GGATC 1 cut(s) 113
BsrI ACTGG 1 cut(s) 143
BssECI CCNNGG 1 cut(s) 123
BssMI GATC 1 cut(s) 118
BssT1I CCWWGG 1 cut(s) 123
Bst4CI ACNGT 1 cut(s) 319
BstDEI CTNAG 1 cut(s) 63
BstDSI CCRYGG 1 cut(s) 123
BstF5I GGATG 1 cut(s) 238
BstKTI GATC 1 cut(s) 121
BstMBI GATC 1 cut(s) 118
BstMWI GCNNNNNNNGC 1 cut(s) 242
BstNSI RCATGY 1 cut(s) 32
BstSFI CTRYAG 1 cut(s) 315
BtgI CCRYGG 1 cut(s) 123
BtrI CACGTC 1 cut(s) 151
BtsCI GGATG 1 cut(s) 238
BtsIMutI CAGTG 1 cut(s) 136
BveI ACCTGC 1 cut(s) 174
CviAII CATG 4 cut(s) 29, 124, 248, 278
CviJI RGCY 5 cut(s) 41, 93, 201, 218, 236
CviKI_1 RGCY 5 cut(s) 41, 93, 201, 218, 236
DdeI CTNAG 1 cut(s) 63
DpnI GATC 1 cut(s) 120
DpnII GATC 1 cut(s) 118
Eco130I CCWWGG 1 cut(s) 123
EcoT14I CCWWGG 1 cut(s) 123
ErhI CCWWGG 1 cut(s) 123
FaeI CATG 4 cut(s) 32, 127, 251, 281
FaiI YATR 5 cut(s) 30, 125, 186, 249, 279
FaqI GGGAC 1 cut(s) 258
FatI CATG 4 cut(s) 28, 123, 247, 277
FokI GGATG 1 cut(s) 225
FspBI CTAG 1 cut(s) 233
Hin1II CATG 4 cut(s) 32, 127, 251, 281
HinfI GANTC 3 cut(s) 65, 128, 194
HphI GGTGA 1 cut(s) 34
Hpy188I TCNGA 3 cut(s) 70, 89, 329
HpyAV CCTTC 3 cut(s) 7, 47, 142
HpyCH4III ACNGT 1 cut(s) 319
HpyCH4IV ACGT 1 cut(s) 150
HpyCH4V TGCA 2 cut(s) 169, 260
HpyF10VI GCNNNNNNNGC 1 cut(s) 242
HpyF3I CTNAG 1 cut(s) 63
HpySE526I ACGT 1 cut(s) 150
Hsp92II CATG 4 cut(s) 32, 127, 251, 281
Kzo9I GATC 1 cut(s) 118
LpnPI CCDG 4 cut(s) 124, 179, 211, 255
LweI GCATC 1 cut(s) 178
MaeI CTAG 1 cut(s) 233
MaeII ACGT 1 cut(s) 150
MaeIII GTNAC 1 cut(s) 58
MalI GATC 1 cut(s) 120
MboI GATC 1 cut(s) 118
MlyI GAGTC 3 cut(s) 74, 137, 203
MmeI TCCRAC 1 cut(s) 48
MnlI CCTC 3 cut(s) 83, 113, 208
MseI TTAA 1 cut(s) 204
MwoI GCNNNNNNNGC 1 cut(s) 242
NcoI CCATGG 1 cut(s) 123
NdeII GATC 1 cut(s) 118
NlaIII CATG 4 cut(s) 32, 127, 251, 281
NmeAIII GCCGAG 1 cut(s) 67
NmuCI GTSAC 1 cut(s) 58
NspI RCATGY 1 cut(s) 32
PflFI GACNNNGTC 1 cut(s) 64
PleI GAGTC 3 cut(s) 73, 136, 202
PpsI GAGTC 3 cut(s) 73, 136, 202
PsyI GACNNNGTC 1 cut(s) 64
SaqAI TTAA 1 cut(s) 204
Sau3AI GATC 1 cut(s) 118
SchI GAGTC 3 cut(s) 74, 137, 203
SetI ASST 6 cut(s) 105, 153, 168, 178, 203, 238
SfaNI GCATC 1 cut(s) 178
SfcI CTRYAG 1 cut(s) 315
SsiI CCGC 1 cut(s) 224
SspMI CTAG 1 cut(s) 233
StyI CCWWGG 1 cut(s) 123
TaaI ACNGT 1 cut(s) 319
TaiI ACGT 1 cut(s) 153
Tru1I TTAA 1 cut(s) 204
Tru9I TTAA 1 cut(s) 204
TscAI CASTG 1 cut(s) 143
TseFI GTSAC 1 cut(s) 58
Tsp45I GTSAC 1 cut(s) 58
TspGWI ACGGA 1 cut(s) 260
TspRI CASTG 1 cut(s) 143
Tth111I GACNNNGTC 1 cut(s) 64
XceI RCATGY 1 cut(s) 32
XspI CTAG 1 cut(s) 233
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.