Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002989.1

Orthogroup ID

OG0004131

Physical Location & Seq

Genomic Coordinates Reverse (-)

7975 .. 8856

Gene Structure 882 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0002989.1_g000002.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 330 bp

atggaggaagcgaagggagtggtgaagcatgtattgttagctaagttcaaggaaggagtgactgagtcggagattgagcaactcatcagaggctttgccaacctcgtcaatctcattgatcccatggagtccttccactggggaaacgacgtgagcattgagaacctgcatcaaggtttcactcatatctttgagtccagctttaagagtactgaggctgttgcggagtatctagctcatcctgcccatgttgattttgcaaacttgttccgtccccatgtggagaaagtccttgtgtttgattacaaacccactacagttcgtgtctga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005886 GO:0006950 GO:0006952 GO:0008150 GO:0009605 GO:0009607 GO:0009617 GO:0009620 GO:0016020 GO:0042742 GO:0043207 GO:0044424 GO:0044444 GO:0044464 GO:0050832 GO:0050896 GO:0051704 GO:0051707 GO:0071944 GO:0098542

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Dabb

Protein Analysis

109

Amino Acids

12.42

Weight (kDa)

5.57

Isoelectric Point (pI)

32.15

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004131)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G17210 AT3G17210
fragaria_vesca	FvH4_4g20800 FvH4_4g20800
malus_domestica	MD13G1147600.v1.1 MD16G1147500.v1.1
prunus_persica	Prupe.1G111200_v2.0.a1 Prupe.1G111200_v2.0.a1
pyrus_communis	pycom13g12710 pycom16g12590
rosa_chinensis	RchiOBHm_Chr1g0339351 RchiOBHm_Chr4g0426271
rosa_laevigata	RLG00000007306 RLG00000029227
rosa_multiflora	Rmu_sc0000613.1_g000003 Rmu_sc0000730.1_g000036 Rmu_sc0002989.1_g000002 Rmu_sc0020679.1_g000001
rosa_roxburghii	Rroxscaffold_4G00313430 Rroxscaffold_5G00368300
rosa_rugosa	Rorug01G0142500.1 Rorug04G0209900
rosa_samantha	Rh1AG159200 Rh1BG126300 Rh1CG148400 Rh4AG266900 Rh4BG272800 Rh4CG286800 Rh4DG269200 Rh4DG269400
rosa_wichuraiana	Rw1G013560 Rw4G023070 Rw4G023090

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	174
AciI	CCGC	1 cut(s)	224
AclWI	GGATC	1 cut(s)	113
AfaI	GTAC	1 cut(s)	211
AfiI	CCNNNNNNNGG	1 cut(s)	138
AgsI	TTSAA	1 cut(s)	49
AjiI	CACGTC	1 cut(s)	151
AluBI	AGCT	3 cut(s)	41, 201, 236
AluI	AGCT	3 cut(s)	41, 201, 236
AlwI	GGATC	1 cut(s)	113
AsuHPI	GGTGA	1 cut(s)	34
BfaI	CTAG	1 cut(s)	233
BfmI	CTRYAG	1 cut(s)	315
BfuAI	ACCTGC	1 cut(s)	174
BmcAI	AGTACT	1 cut(s)	211
BmgBI	CACGTC	1 cut(s)	151
BmrI	ACTGGG	1 cut(s)	148
BmsI	GCATC	1 cut(s)	178
BmuI	ACTGGG	1 cut(s)	148
BsaJI	CCNNGG	1 cut(s)	123
Bsc4I	CCNNNNNNNGG	1 cut(s)	138
Bse1I	ACTGG	1 cut(s)	143
BseDI	CCNNGG	1 cut(s)	123
BseGI	GGATG	1 cut(s)	238
BseLI	CCNNNNNNNGG	1 cut(s)	138
BseMII	CTCAG	2 cut(s)	54, 204
BseNI	ACTGG	1 cut(s)	143
BslFI	GGGAC	1 cut(s)	258
BslI	CCNNNNNNNGG	1 cut(s)	138
BsmFI	GGGAC	1 cut(s)	258
Bsp143I	GATC	1 cut(s)	118
Bsp19I	CCATGG	1 cut(s)	123
BspACI	CCGC	1 cut(s)	224
BspCNI	CTCAG	2 cut(s)	55, 205
BspMI	ACCTGC	1 cut(s)	174
BspPI	GGATC	1 cut(s)	113
BsrI	ACTGG	1 cut(s)	143
BssECI	CCNNGG	1 cut(s)	123
BssMI	GATC	1 cut(s)	118
BssT1I	CCWWGG	1 cut(s)	123
Bst4CI	ACNGT	1 cut(s)	319
BstDEI	CTNAG	3 cut(s)	42, 63, 213
BstDSI	CCRYGG	1 cut(s)	123
BstF5I	GGATG	1 cut(s)	238
BstKTI	GATC	1 cut(s)	121
BstMBI	GATC	1 cut(s)	118
BstMWI	GCNNNNNNNGC	1 cut(s)	242
BstNSI	RCATGY	1 cut(s)	32
BstSFI	CTRYAG	1 cut(s)	315
BtgI	CCRYGG	1 cut(s)	123
BtrI	CACGTC	1 cut(s)	151
BtsCI	GGATG	1 cut(s)	238
BtsIMutI	CAGTG	1 cut(s)	136
BveI	ACCTGC	1 cut(s)	174
Csp6I	GTAC	1 cut(s)	210
CviAII	CATG	4 cut(s)	29, 124, 248, 278
CviJI	RGCY	5 cut(s)	41, 93, 201, 218, 236
CviKI_1	RGCY	5 cut(s)	41, 93, 201, 218, 236
CviQI	GTAC	1 cut(s)	210
DdeI	CTNAG	3 cut(s)	42, 63, 213
DpnI	GATC	1 cut(s)	120
DpnII	GATC	1 cut(s)	118
Eco130I	CCWWGG	1 cut(s)	123
EcoT14I	CCWWGG	1 cut(s)	123
ErhI	CCWWGG	1 cut(s)	123
FaeI	CATG	4 cut(s)	32, 127, 251, 281
FaiI	YATR	5 cut(s)	30, 125, 186, 249, 279
FaqI	GGGAC	1 cut(s)	258
FatI	CATG	4 cut(s)	28, 123, 247, 277
FokI	GGATG	1 cut(s)	225
FspBI	CTAG	1 cut(s)	233
Hin1II	CATG	4 cut(s)	32, 127, 251, 281
HinfI	GANTC	3 cut(s)	65, 128, 194
HphI	GGTGA	1 cut(s)	34
Hpy188I	TCNGA	3 cut(s)	70, 89, 329
Hpy99I	CGWCG	1 cut(s)	152
HpyAV	CCTTC	3 cut(s)	7, 47, 142
HpyCH4III	ACNGT	1 cut(s)	319
HpyCH4IV	ACGT	1 cut(s)	150
HpyCH4V	TGCA	2 cut(s)	169, 260
HpyF10VI	GCNNNNNNNGC	1 cut(s)	242
HpyF3I	CTNAG	3 cut(s)	42, 63, 213
HpySE526I	ACGT	1 cut(s)	150
Hsp92II	CATG	4 cut(s)	32, 127, 251, 281
Kzo9I	GATC	1 cut(s)	118
LpnPI	CCDG	4 cut(s)	124, 179, 211, 255
LweI	GCATC	1 cut(s)	178
MaeI	CTAG	1 cut(s)	233
MaeII	ACGT	1 cut(s)	150
MaeIII	GTNAC	1 cut(s)	58
MalI	GATC	1 cut(s)	120
MboI	GATC	1 cut(s)	118
MlyI	GAGTC	3 cut(s)	74, 137, 203
MmeI	TCCRAC	1 cut(s)	48
MnlI	CCTC	3 cut(s)	83, 113, 208
MseI	TTAA	1 cut(s)	204
MwoI	GCNNNNNNNGC	1 cut(s)	242
NcoI	CCATGG	1 cut(s)	123
NdeII	GATC	1 cut(s)	118
NlaIII	CATG	4 cut(s)	32, 127, 251, 281
NmuCI	GTSAC	1 cut(s)	58
NspI	RCATGY	1 cut(s)	32
PflFI	GACNNNGTC	1 cut(s)	64
PleI	GAGTC	3 cut(s)	73, 136, 202
PpsI	GAGTC	3 cut(s)	73, 136, 202
PsyI	GACNNNGTC	1 cut(s)	64
RsaI	GTAC	1 cut(s)	211
RsaNI	GTAC	1 cut(s)	210
SaqAI	TTAA	1 cut(s)	204
Sau3AI	GATC	1 cut(s)	118
ScaI	AGTACT	1 cut(s)	211
SchI	GAGTC	3 cut(s)	74, 137, 203
SetI	ASST	7 cut(s)	43, 105, 153, 168, 178, 203, 238
SfaNI	GCATC	1 cut(s)	178
SfcI	CTRYAG	1 cut(s)	315
SsiI	CCGC	1 cut(s)	224
SspMI	CTAG	1 cut(s)	233
StyI	CCWWGG	1 cut(s)	123
TaaI	ACNGT	1 cut(s)	319
TaiI	ACGT	1 cut(s)	153
TatI	WGTACW	1 cut(s)	209
Tru1I	TTAA	1 cut(s)	204
Tru9I	TTAA	1 cut(s)	204
TscAI	CASTG	1 cut(s)	143
TseFI	GTSAC	1 cut(s)	58
Tsp45I	GTSAC	1 cut(s)	58
TspGWI	ACGGA	1 cut(s)	260
TspRI	CASTG	1 cut(s)	143
Tth111I	GACNNNGTC	1 cut(s)	64
XceI	RCATGY	1 cut(s)	32
XspI	CTAG	1 cut(s)	233
ZrmI	AGTACT	1 cut(s)	211

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.