Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000004

Orthogroup ID

OG0001700

Physical Location & Seq

Genomic Coordinates Reverse (-)

36563933 .. 36579902

Gene Structure 15970 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug04G0209900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 525 bp

ATGACTGGTGGGGCCGGGCTTACTGATGGCAGCGGCAATGTGGAGGTCAAAAGTGACTCAATTAGTGAGGGGAGTTCGGATTTTGATCTGGAATCAGATGGGTCACTGCCCTTTTACATGCTTGATGCTTACGAAGAGTTCTATGGACCTAATATGGGCACTGTTTATCTATTTGGGAAGGTTAAAGTAGGAAGTTCATATCAGCTTGAAAAGGATGCCGAGGACTCAAGGATTTCACCCACAGATTTTCGTAAGAAGCTGCATGATGCGGCTTCAGAATTAAAGAATGAATTAGCAAAGAAGTTGTTGGATCTCAATGTATCAGCTTTTAGCATGGCACCTGTCAAGAGGAACTATGCTTTTGAGCGATCTGACATACCTGCAGGGGAGAATTATGTACTGAAGATCAATTATCCATTCCGGGATCCACCACTATCAGCAGATCTAAAAGGAGAAACTTTTTGTGCTCTTCTAGGAACTCATAGCAGGTATAAAGAGTTGTTGCTCTTCATTTTTAATACCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000271 GO:0000323 GO:0001775 GO:0002252 GO:0002263 GO:0002274 GO:0002275 GO:0002283 GO:0002366 GO:0002376 GO:0002443 GO:0002444 GO:0002446 GO:0003674 GO:0003824 GO:0005488 GO:0005536 GO:0005575 GO:0005576 GO:0005622 GO:0005623 GO:0005737 GO:0005764 GO:0005773 GO:0005775 GO:0005829 GO:0005975 GO:0005976 GO:0005977 GO:0005978 GO:0005996 GO:0006012 GO:0006073 GO:0006091 GO:0006112 GO:0006810 GO:0006887 GO:0006955 GO:0008150 GO:0008152 GO:0008194 GO:0008378 GO:0008466 GO:0009058 GO:0009059 GO:0009250 GO:0009987 GO:0012505 GO:0015980 GO:0016051 GO:0016192 GO:0016740 GO:0016757 GO:0016758 GO:0019318 GO:0030141 GO:0030246 GO:0031410 GO:0031974 GO:0031982 GO:0031983 GO:0032940 GO:0033692 GO:0034637 GO:0034645 GO:0034774 GO:0035250 GO:0035251 GO:0036094 GO:0036230 GO:0042119 GO:0043170 GO:0043202 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043299 GO:0043312 GO:0044042 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044262 GO:0044264 GO:0044281 GO:0044422 GO:0044424 GO:0044433 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0045055 GO:0045321 GO:0046527 GO:0046903 GO:0047216 GO:0048029 GO:0050896 GO:0051179 GO:0051234 GO:0055114 GO:0060205 GO:0070013 GO:0071704 GO:0097708 GO:0099503 GO:0101002 GO:1901576 GO:1904813

KEGG Pathways

Metabolic & Signaling

ko00052 map00052

Pfam Domains

Protein Families

Glyco_transf_8

Protein Analysis

174

Amino Acids

19.27

Weight (kDa)

4.8

Isoelectric Point (pI)

36.31

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001700)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G60450 AT1G60470
fragaria_vesca	FvH4_4g20790 FvH4_4g34160
malus_domestica	MD13G1093700.v1.1 MD13G1147700.v1.1 MD16G1095000.v1.1
prunus_persica	Prupe.1G111300_v2.0.a1 Prupe.1G251600_v2.0.a1 Prupe.8G258200_v2.0.a1
pyrus_communis	pycom13g08160 pycom13g12730 pycom16g08080 pycom16g08090 pycom16g12600
rosa_chinensis	RchiOBHm_Chr4g0426261 RchiOBHm_Chr4g0443671 RchiOBHm_Chr6g0293551
rosa_laevigata	RLG00000005903 RLG00000007308 RLG00000011942
rosa_multiflora	Rmu_co8279911.1_g000001 Rmu_sc0000730.1_g000037 Rmu_sc0001426.1_g000017 Rmu_sc0032866.1_g000001 Rmu_sc0036604.1_g000001
rosa_roxburghii	Rroxscaffold_5G00368270 Rroxscaffold_5G00384220
rosa_rugosa	Rorug04G0209900 Rorug06G0236400
rosa_samantha	Rh4AG266800 Rh4AG406100 Rh4BG272700 Rh4BG417100 Rh4CG286100 Rh4CG286400 Rh4CG431600 Rh4DG269100 Rh4DG269300 Rh4DG412700 Rh6AG349100 Rh6BG356500 Rh6CG363200 Rh6DG350100
rosa_wichuraiana	Rw4G023060 Rw4G023080 Rw4G034870 Rw6G030370

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	2 cut(s)	388, 477
AccB1I	GGYRCC	1 cut(s)	337
AciI	CCGC	2 cut(s)	33, 269
AclWI	GGATC	3 cut(s)	318, 419, 432
AcuI	CTGAAG	2 cut(s)	258, 422
AfaI	GTAC	1 cut(s)	399
AfiI	CCNNNNNNNGG	1 cut(s)	155
AgsI	TTSAA	1 cut(s)	209
AluBI	AGCT	3 cut(s)	205, 259, 326
AluI	AGCT	3 cut(s)	205, 259, 326
Alw21I	GWGCWC	1 cut(s)	469
AlwI	GGATC	3 cut(s)	318, 419, 432
AoxI	GGCC	1 cut(s)	12
ApeKI	GCWGC	2 cut(s)	30, 259
AspS9I	GGNCC	2 cut(s)	12, 146
AsuC2I	CCSGG	2 cut(s)	16, 422
AsuHPI	GGTGA	1 cut(s)	228
AvaII	GGWCC	1 cut(s)	146
BaeGI	GKGCMC	1 cut(s)	161
BamHI	GGATCC	1 cut(s)	424
BanI	GGYRCC	1 cut(s)	337
Bbv12I	GWGCWC	1 cut(s)	469
BbvI	GCAGC	2 cut(s)	42, 246
BccI	CCATC	2 cut(s)	20, 92
BcnI	CCSGG	2 cut(s)	16, 422
BfaI	CTAG	1 cut(s)	473
BfmI	CTRYAG	1 cut(s)	381
BfuAI	ACCTGC	2 cut(s)	388, 477
BglII	AGATCT	1 cut(s)	442
BisI	GCNGC	4 cut(s)	31, 34, 260, 270
BlsI	GCNGC	4 cut(s)	32, 35, 261, 271
Bme1390I	CCNGG	2 cut(s)	16, 422
Bme18I	GGWCC	1 cut(s)	146
BmgT120I	GGNCC	2 cut(s)	12, 146
BmiI	GGNNCC	3 cut(s)	13, 339, 426
BmrFI	CCNGG	2 cut(s)	16, 422
BmsI	GCATC	3 cut(s)	115, 205, 256
BpuEI	CTTGAG	1 cut(s)	211
BpuMI	CCSGG	2 cut(s)	16, 422
BsaBI	GATNNNNATC	1 cut(s)	84
BsaJI	CCNNGG	1 cut(s)	219
Bsc4I	CCNNNNNNNGG	1 cut(s)	155
Bse1I	ACTGG	1 cut(s)	10
Bse3DI	GCAATG	1 cut(s)	43
Bse8I	GATNNNNATC	1 cut(s)	84
BseDI	CCNNGG	1 cut(s)	219
BseGI	GGATG	1 cut(s)	220
BseJI	GATNNNNATC	1 cut(s)	84
BseLI	CCNNNNNNNGG	1 cut(s)	155
BseMI	GCAATG	1 cut(s)	43
BseNI	ACTGG	1 cut(s)	10
BseSI	GKGCMC	1 cut(s)	161
BseXI	GCAGC	2 cut(s)	42, 246
BshFI	GGCC	1 cut(s)	14
BshNI	GGYRCC	1 cut(s)	337
BsiHKAI	GWGCWC	1 cut(s)	469
BsiSI	CCGG	2 cut(s)	15, 421
BslI	CCNNNNNNNGG	1 cut(s)	155
BsnI	GGCC	1 cut(s)	14
Bsp1286I	GDGCHC	2 cut(s)	161, 469
Bsp143I	GATC	6 cut(s)	85, 310, 368, 405, 424, 442
BspACI	CCGC	2 cut(s)	33, 269
BspANI	GGCC	1 cut(s)	14
BspLI	GGNNCC	3 cut(s)	13, 339, 426
BspMAI	CTGCAG	1 cut(s)	385
BspMI	ACCTGC	2 cut(s)	388, 477
BspPI	GGATC	3 cut(s)	318, 419, 432
BspQI	GCTCTTC	2 cut(s)	474, 512
BspT107I	GGYRCC	1 cut(s)	337
BsrDI	GCAATG	1 cut(s)	43
BsrI	ACTGG	1 cut(s)	10
BssECI	CCNNGG	1 cut(s)	219
BssMI	GATC	6 cut(s)	85, 310, 368, 405, 424, 442
Bst4CI	ACNGT	1 cut(s)	163
Bst6I	CTCTTC	3 cut(s)	129, 474, 512
BstF5I	GGATG	1 cut(s)	220
BstKTI	GATC	6 cut(s)	88, 313, 371, 408, 427, 445
BstMBI	GATC	6 cut(s)	85, 310, 368, 405, 424, 442
BstNSI	RCATGY	1 cut(s)	121
BstSCI	CCNGG	2 cut(s)	14, 420
BstSFI	CTRYAG	1 cut(s)	381
BstSLI	GKGCMC	1 cut(s)	161
BstV1I	GCAGC	2 cut(s)	42, 246
BstX2I	RGATCY	3 cut(s)	310, 424, 442
BstYI	RGATCY	3 cut(s)	310, 424, 442
BsuRI	GGCC	1 cut(s)	14
BtsCI	GGATG	1 cut(s)	220
BtsI	GCAGTG	1 cut(s)	104
BtsIMutI	CAGTG	2 cut(s)	104, 159
BveI	ACCTGC	2 cut(s)	388, 477
Cfr13I	GGNCC	2 cut(s)	12, 146
Csp6I	GTAC	1 cut(s)	398
CviAII	CATG	3 cut(s)	118, 263, 334
CviJI	RGCY	6 cut(s)	14, 19, 205, 259, 272, 326
CviKI_1	RGCY	6 cut(s)	14, 19, 205, 259, 272, 326
CviQI	GTAC	1 cut(s)	398
DpnI	GATC	6 cut(s)	87, 312, 370, 407, 426, 444
DpnII	GATC	6 cut(s)	85, 310, 368, 405, 424, 442
Eam1104I	CTCTTC	3 cut(s)	129, 474, 512
EarI	CTCTTC	3 cut(s)	129, 474, 512
Eco47I	GGWCC	1 cut(s)	146
Eco57I	CTGAAG	2 cut(s)	258, 422
FaeI	CATG	3 cut(s)	121, 266, 337
FatI	CATG	3 cut(s)	117, 262, 333
Fnu4HI	GCNGC	4 cut(s)	31, 34, 260, 270
FokI	GGATG	1 cut(s)	227
Fsp4HI	GCNGC	4 cut(s)	31, 34, 260, 270
FspBI	CTAG	1 cut(s)	473
GluI	GCNGC	4 cut(s)	31, 34, 260, 270
HaeIII	GGCC	1 cut(s)	14
HapII	CCGG	2 cut(s)	15, 421
Hin1II	CATG	3 cut(s)	121, 266, 337
HinfI	GANTC	3 cut(s)	56, 92, 224
HpaII	CCGG	2 cut(s)	15, 421
HphI	GGTGA	1 cut(s)	228
Hpy188I	TCNGA	4 cut(s)	79, 97, 277, 373
Hpy188III	TCNNGA	2 cut(s)	89, 346
HpyAV	CCTTC	1 cut(s)	172
HpyCH4III	ACNGT	1 cut(s)	163
HpyCH4V	TGCA	2 cut(s)	262, 383
Hsp92II	CATG	3 cut(s)	121, 266, 337
Kzo9I	GATC	6 cut(s)	85, 310, 368, 405, 424, 442
LguI	GCTCTTC	2 cut(s)	474, 512
LpnPI	CCDG	7 cut(s)	28, 74, 354, 369, 393, 434, 472
Lsp1109I	GCAGC	2 cut(s)	42, 246
LweI	GCATC	3 cut(s)	115, 205, 256
MaeI	CTAG	1 cut(s)	473
MaeIII	GTNAC	2 cut(s)	53, 102
MalI	GATC	6 cut(s)	87, 312, 370, 407, 426, 444
MboI	GATC	6 cut(s)	85, 310, 368, 405, 424, 442
MboII	GAAGA	4 cut(s)	146, 415, 461, 499
MflI	RGATCY	3 cut(s)	310, 424, 442
MhlI	GDGCHC	2 cut(s)	161, 469
MluCI	AATT	5 cut(s)	60, 278, 290, 391, 409
MlyI	GAGTC	2 cut(s)	50, 218
MmeI	TCCRAC	1 cut(s)	288
MnlI	CCTC	4 cut(s)	37, 61, 214, 342
MseI	TTAA	3 cut(s)	183, 281, 516
MspA1I	CMGCKG	1 cut(s)	33
MspI	CCGG	2 cut(s)	15, 421
MspR9I	CCNGG	2 cut(s)	16, 422
NciI	CCSGG	2 cut(s)	16, 422
NdeII	GATC	6 cut(s)	85, 310, 368, 405, 424, 442
NlaIII	CATG	3 cut(s)	121, 266, 337
NlaIV	GGNNCC	3 cut(s)	13, 339, 426
NmeAIII	GCCGAG	1 cut(s)	244
NmuCI	GTSAC	2 cut(s)	53, 102
NspI	RCATGY	1 cut(s)	121
PciSI	GCTCTTC	2 cut(s)	474, 512
PfeI	GAWTC	1 cut(s)	92
PfoI	TCCNGGA	1 cut(s)	420
PkrI	GCNGC	4 cut(s)	32, 35, 261, 271
PleI	GAGTC	2 cut(s)	50, 218
PpsI	GAGTC	2 cut(s)	50, 218
PspN4I	GGNNCC	3 cut(s)	13, 339, 426
PspPI	GGNCC	2 cut(s)	12, 146
PstI	CTGCAG	1 cut(s)	385
PsuI	RGATCY	3 cut(s)	310, 424, 442
RsaI	GTAC	1 cut(s)	399
RsaNI	GTAC	1 cut(s)	398
SapI	GCTCTTC	2 cut(s)	474, 512
SaqAI	TTAA	3 cut(s)	183, 281, 516
SatI	GCNGC	4 cut(s)	31, 34, 260, 270
Sau3AI	GATC	6 cut(s)	85, 310, 368, 405, 424, 442
Sau96I	GGNCC	2 cut(s)	12, 146
SbfI	CCTGCAGG	1 cut(s)	385
SchI	GAGTC	2 cut(s)	50, 218
ScrFI	CCNGG	2 cut(s)	16, 422
SdaI	CCTGCAGG	1 cut(s)	385
SduI	GDGCHC	2 cut(s)	161, 469
SfaNI	GCATC	3 cut(s)	115, 205, 256
SfcI	CTRYAG	1 cut(s)	381
SinI	GGWCC	1 cut(s)	146
SmlI	CTYRAG	1 cut(s)	226
SmoI	CTYRAG	1 cut(s)	226
Sse8387I	CCTGCAGG	1 cut(s)	385
Sse9I	AATT	5 cut(s)	60, 278, 290, 391, 409
SsiI	CCGC	2 cut(s)	33, 269
SspMI	CTAG	1 cut(s)	473
StyD4I	CCNGG	2 cut(s)	14, 420
TaaI	ACNGT	1 cut(s)	163
TasI	AATT	5 cut(s)	60, 278, 290, 391, 409
TatI	WGTACW	1 cut(s)	397
TauI	GCSGC	2 cut(s)	36, 272
TfiI	GAWTC	1 cut(s)	92
Tru1I	TTAA	3 cut(s)	183, 281, 516
Tru9I	TTAA	3 cut(s)	183, 281, 516
TscAI	CASTG	2 cut(s)	111, 166
TseFI	GTSAC	2 cut(s)	53, 102
TseI	GCWGC	2 cut(s)	30, 259
Tsp45I	GTSAC	2 cut(s)	53, 102
TspDTI	ATGAA	3 cut(s)	186, 303, 499
TspRI	CASTG	2 cut(s)	111, 166
VpaK11BI	GGWCC	1 cut(s)	146
XceI	RCATGY	1 cut(s)	121
XspI	CTAG	1 cut(s)	473

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.