Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr13

Orthogroup ID

OG0001700

Physical Location & Seq

Genomic Coordinates Reverse (-)

5423428 .. 5424550

Gene Structure 1123 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom13g08160.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 762 bp

ATGGCACCCCGAGAAGTTCCAGCCGATGTGTTGCAGGCAACCAGCAACCGTACTACTACAGGCTACTCCAAAAGGGCCTTTGTGACATTTTTAGCCGGTAATGCTGATTATGTCAAAGGGGTTGTGGGTTTGGCTAAGGGCCTACGCAAAGTGAAGAGTGAATACTCTCTTGTGGTTGCAATATTGCCGGACGTGCCGGAGGAGCACCGTGAGATTTTGCGGTCTCAGGGCTGTATTGTCCAGGAGATCGAACCTATTTATCCTCCTGAGAACCAGATCAAGTTTGCAATGGCCTACTATGTCATCAACTACTCGAAGCTCCGTATTTGGAATTTTGAGGGGTACAGCAAAATGATATATTTGGATGCGGATATCCAAGTGTATGAGAACATAGATCACCTGTTTGACACGCCTAATGGCTACTTCTACGCTGTGATGGACTGCTTCTGTGAGAAAACATGGAGTCACTCACCTCAATACAAAATTGGGTATTGCCAGCAGTGCCCTGACAAGGTTTCATGGCCTGCGGACATGGGCTCTCCTCCTCCACTGTATTTCAACGCCGGAATGTTTGTGTTCGAGCCTAGCCGCTTGACTTACAACAGCCTTCTTCAGACACTGCAAGTTGTCCCACCCACCCCTTTTGCAGAACAGGAAAGATTTCTTGAACATGTTCTTCCAAAAGACATACAAACCCATACCAAATATATACAACCTAGTTCTAGCCAATCTTTGGCGCCACCCAGAGAACGTGCAGCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000271 GO:0003674 GO:0003824 GO:0005488 GO:0005536 GO:0005975 GO:0005976 GO:0005977 GO:0005978 GO:0005996 GO:0006012 GO:0006073 GO:0006091 GO:0006112 GO:0006950 GO:0006979 GO:0008150 GO:0008152 GO:0008194 GO:0008378 GO:0008466 GO:0009058 GO:0009059 GO:0009250 GO:0009987 GO:0015980 GO:0016051 GO:0016740 GO:0016757 GO:0016758 GO:0019318 GO:0030246 GO:0033692 GO:0034637 GO:0034645 GO:0035250 GO:0035251 GO:0036094 GO:0043170 GO:0044042 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044262 GO:0044264 GO:0044281 GO:0046527 GO:0047216 GO:0048029 GO:0050896 GO:0055114 GO:0071704 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00052 map00052

Pfam Domains

Protein Families

Glyco_transf_8

Protein Analysis

254

Amino Acids

28.88

Weight (kDa)

5.98

Isoelectric Point (pI)

50.69

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Glyco_transf_8	PF01501	29 - 208	2.8e-31	Glycosyl transferase family 8

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001700)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G60450 AT1G60470
fragaria_vesca	FvH4_4g20790 FvH4_4g34160
malus_domestica	MD13G1093700.v1.1 MD13G1147700.v1.1 MD16G1095000.v1.1
prunus_persica	Prupe.1G111300_v2.0.a1 Prupe.1G251600_v2.0.a1 Prupe.8G258200_v2.0.a1
pyrus_communis	pycom13g08160 pycom13g12730 pycom16g08080 pycom16g08090 pycom16g12600
rosa_chinensis	RchiOBHm_Chr4g0426261 RchiOBHm_Chr4g0443671 RchiOBHm_Chr6g0293551
rosa_laevigata	RLG00000005903 RLG00000007308 RLG00000011942
rosa_multiflora	Rmu_co8279911.1_g000001 Rmu_sc0000730.1_g000037 Rmu_sc0001426.1_g000017 Rmu_sc0032866.1_g000001 Rmu_sc0036604.1_g000001
rosa_roxburghii	Rroxscaffold_5G00368270 Rroxscaffold_5G00384220
rosa_rugosa	Rorug04G0209900 Rorug06G0236400
rosa_samantha	Rh4AG266800 Rh4AG406100 Rh4BG272700 Rh4BG417100 Rh4CG286100 Rh4CG286400 Rh4CG431600 Rh4DG269100 Rh4DG269300 Rh4DG412700 Rh6AG349100 Rh6BG356500 Rh6CG363200 Rh6DG350100
rosa_wichuraiana	Rw4G023060 Rw4G023080 Rw4G034870 Rw6G030370

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	4, 736
AccB7I	CCANNNNNTGG	1 cut(s)	733
AciI	CCGC	4 cut(s)	220, 368, 527, 589
AcsI	RAATTY	1 cut(s)	331
AcuI	CTGAAG	1 cut(s)	596
AcyI	GRCGYC	1 cut(s)	737
AfaI	GTAC	2 cut(s)	52, 344
AfiI	CCNNNNNNNGG	2 cut(s)	511, 733
AflIII	ACRYGT	1 cut(s)	670
AgsI	TTSAA	2 cut(s)	559, 668
AjiI	CACGTC	1 cut(s)	193
AjnI	CCWGG	1 cut(s)	240
AluBI	AGCT	2 cut(s)	319, 758
AluI	AGCT	2 cut(s)	319, 758
Alw21I	GWGCWC	1 cut(s)	207
Alw26I	GTCTC	1 cut(s)	228
AlwNI	CAGNNNCTG	1 cut(s)	619
Ama87I	CYCGRG	1 cut(s)	9
AoxI	GGCC	4 cut(s)	75, 139, 291, 521
ApeKI	GCWGC	1 cut(s)	755
ApoI	RAATTY	1 cut(s)	331
Asp700I	GAANNNNTTC	2 cut(s)	660, 672
AspLEI	GCGC	1 cut(s)	739
AspS9I	GGNCC	2 cut(s)	75, 139
AsuHPI	GGTGA	2 cut(s)	389, 462
AvaI	CYCGRG	1 cut(s)	9
BaeGI	GKGCMC	1 cut(s)	506
BanI	GGYRCC	2 cut(s)	4, 736
BanII	GRGCYC	1 cut(s)	539
BarI	GAAGNNNNNNTAC	2 cut(s)	146, 178
Bbv12I	GWGCWC	1 cut(s)	207
BccI	CCATC	1 cut(s)	430
BciT130I	CCWGG	1 cut(s)	242
BcoDI	GTCTC	1 cut(s)	228
BfaI	CTAG	3 cut(s)	585, 717, 723
BfmI	CTRYAG	1 cut(s)	57
BfoI	RGCGCY	1 cut(s)	740
BisI	GCNGC	2 cut(s)	589, 756
BlsI	GCNGC	2 cut(s)	590, 757
Bme1390I	CCNGG	1 cut(s)	242
BmeT110I	CYCGRG	1 cut(s)	9
BmgBI	CACGTC	1 cut(s)	193
BmgT120I	GGNCC	2 cut(s)	75, 139
BmiI	GGNNCC	2 cut(s)	6, 738
BmrFI	CCNGG	1 cut(s)	242
BmsI	GCATC	1 cut(s)	355
Bpu10I	CCTNAGC	1 cut(s)	135
BsaHI	GRCGYC	1 cut(s)	737
BsaI	GGTCTC	1 cut(s)	228
Bsc4I	CCNNNNNNNGG	2 cut(s)	511, 733
Bse118I	RCCGGY	1 cut(s)	95
Bse3DI	GCAATG	1 cut(s)	294
BseBI	CCWGG	1 cut(s)	242
BseGI	GGATG	1 cut(s)	370
BseLI	CCNNNNNNNGG	2 cut(s)	511, 733
BseMI	GCAATG	1 cut(s)	294
BseMII	CTCAG	2 cut(s)	239, 258
BseRI	GAGGAG	3 cut(s)	215, 531, 534
BseSI	GKGCMC	1 cut(s)	506
BshFI	GGCC	4 cut(s)	77, 141, 293, 523
BshNI	GGYRCC	2 cut(s)	4, 736
BsiHKAI	GWGCWC	1 cut(s)	207
BsiHKCI	CYCGRG	1 cut(s)	9
BsiSI	CCGG	4 cut(s)	96, 188, 197, 564
BslFI	GGGAC	1 cut(s)	614
BslI	CCNNNNNNNGG	2 cut(s)	511, 733
BsmAI	GTCTC	1 cut(s)	228
BsmFI	GGGAC	1 cut(s)	614
BsnI	GGCC	4 cut(s)	77, 141, 293, 523
Bso31I	GGTCTC	1 cut(s)	228
BsoBI	CYCGRG	1 cut(s)	9
Bsp1286I	GDGCHC	3 cut(s)	207, 506, 539
Bsp143I	GATC	3 cut(s)	246, 276, 394
BspACI	CCGC	4 cut(s)	220, 368, 527, 589
BspANI	GGCC	4 cut(s)	77, 141, 293, 523
BspCNI	CTCAG	2 cut(s)	238, 259
BspLI	GGNNCC	2 cut(s)	6, 738
BspT107I	GGYRCC	2 cut(s)	4, 736
BspTNI	GGTCTC	1 cut(s)	228
BsrDI	GCAATG	1 cut(s)	294
BsrFI	RCCGGY	1 cut(s)	95
BssAI	RCCGGY	1 cut(s)	95
BssMI	GATC	3 cut(s)	246, 276, 394
BssNI	GRCGYC	1 cut(s)	737
Bst2UI	CCWGG	1 cut(s)	242
Bst4CI	ACNGT	3 cut(s)	50, 209, 552
Bst6I	CTCTTC	1 cut(s)	149
BstACI	GRCGYC	1 cut(s)	737
BstC8I	GCNNGC	3 cut(s)	36, 497, 525
BstDEI	CTNAG	3 cut(s)	135, 225, 267
BstF5I	GGATG	1 cut(s)	370
BstH2I	RGCGCY	1 cut(s)	740
BstHHI	GCGC	1 cut(s)	739
BstKTI	GATC	3 cut(s)	249, 279, 397
BstMAI	GTCTC	1 cut(s)	228
BstMBI	GATC	3 cut(s)	246, 276, 394
BstMWI	GCNNNNNNNGC	4 cut(s)	101, 193, 202, 501
BstNI	CCWGG	1 cut(s)	242
BstNSI	RCATGY	1 cut(s)	674
BstSCI	CCNGG	1 cut(s)	240
BstSFI	CTRYAG	1 cut(s)	57
BstSLI	GKGCMC	1 cut(s)	506
BsuRI	GGCC	4 cut(s)	77, 141, 293, 523
BtrI	CACGTC	1 cut(s)	193
BtsCI	GGATG	1 cut(s)	370
BtsI	GCAGTG	2 cut(s)	506, 617
BtsIMutI	CAGTG	3 cut(s)	506, 548, 617
Cac8I	GCNNGC	3 cut(s)	36, 497, 525
CaiI	CAGNNNCTG	1 cut(s)	619
CfoI	GCGC	1 cut(s)	739
Cfr10I	RCCGGY	1 cut(s)	95
Cfr13I	GGNCC	2 cut(s)	75, 139
Csp6I	GTAC	2 cut(s)	51, 343
CspCI	CAANNNNNGTGG	2 cut(s)	625, 660
CviAII	CATG	4 cut(s)	459, 519, 532, 671
CviQI	GTAC	2 cut(s)	51, 343
DdeI	CTNAG	3 cut(s)	135, 225, 267
DinI	GGCGCC	1 cut(s)	738
DpnI	GATC	3 cut(s)	248, 278, 396
DpnII	GATC	3 cut(s)	246, 276, 394
Eam1104I	CTCTTC	1 cut(s)	149
EarI	CTCTTC	1 cut(s)	149
Eco24I	GRGCYC	1 cut(s)	539
Eco31I	GGTCTC	1 cut(s)	228
Eco32I	GATATC	1 cut(s)	373
Eco57I	CTGAAG	1 cut(s)	596
Eco88I	CYCGRG	1 cut(s)	9
EcoO109I	RGGNCCY	2 cut(s)	75, 139
EcoRII	CCWGG	1 cut(s)	240
EcoRV	GATATC	1 cut(s)	373
EcoT38I	GRGCYC	1 cut(s)	539
EgeI	GGCGCC	1 cut(s)	738
EheI	GGCGCC	1 cut(s)	738
FaeI	CATG	4 cut(s)	462, 522, 535, 674
FaqI	GGGAC	1 cut(s)	614
FatI	CATG	4 cut(s)	458, 518, 531, 670
Fnu4HI	GCNGC	2 cut(s)	589, 756
FokI	GGATG	1 cut(s)	377
FriOI	GRGCYC	1 cut(s)	539
Fsp4HI	GCNGC	2 cut(s)	589, 756
FspBI	CTAG	3 cut(s)	585, 717, 723
GlaI	GCGC	1 cut(s)	738
GluI	GCNGC	2 cut(s)	589, 756
HaeII	RGCGCY	1 cut(s)	740
HaeIII	GGCC	4 cut(s)	77, 141, 293, 523
HapII	CCGG	4 cut(s)	96, 188, 197, 564
HhaI	GCGC	1 cut(s)	739
Hin1I	GRCGYC	1 cut(s)	737
Hin1II	CATG	4 cut(s)	462, 522, 535, 674
Hin6I	GCGC	1 cut(s)	737
HinP1I	GCGC	1 cut(s)	737
HinfI	GANTC	1 cut(s)	463
HpaII	CCGG	4 cut(s)	96, 188, 197, 564
HphI	GGTGA	2 cut(s)	389, 462
Hpy188I	TCNGA	1 cut(s)	615
Hpy188III	TCNNGA	2 cut(s)	266, 665
HpyAV	CCTTC	1 cut(s)	617
HpyCH4III	ACNGT	3 cut(s)	50, 209, 552
HpyCH4IV	ACGT	2 cut(s)	192, 751
HpyCH4V	TGCA	6 cut(s)	34, 179, 287, 622, 647, 755
HpyF10VI	GCNNNNNNNGC	4 cut(s)	101, 193, 202, 501
HpyF3I	CTNAG	3 cut(s)	135, 225, 267
HpySE526I	ACGT	2 cut(s)	192, 751
Hsp92I	GRCGYC	1 cut(s)	737
Hsp92II	CATG	4 cut(s)	462, 522, 535, 674
HspAI	GCGC	1 cut(s)	737
KasI	GGCGCC	1 cut(s)	736
Kzo9I	GATC	3 cut(s)	246, 276, 394
LmnI	GCTCC	2 cut(s)	202, 324
LweI	GCATC	1 cut(s)	355
MaeI	CTAG	3 cut(s)	585, 717, 723
MaeII	ACGT	2 cut(s)	192, 751
MaeIII	GTNAC	2 cut(s)	82, 464
MalI	GATC	3 cut(s)	248, 278, 396
MboI	GATC	3 cut(s)	246, 276, 394
MboII	GAAGA	3 cut(s)	166, 602, 668
MhlI	GDGCHC	3 cut(s)	207, 506, 539
MluCI	AATT	2 cut(s)	331, 483
Mly113I	GGCGCC	1 cut(s)	737
MlyI	GAGTC	1 cut(s)	472
MnlI	CCTC	6 cut(s)	193, 273, 331, 483, 552, 555
MroXI	GAANNNNTTC	2 cut(s)	660, 672
MspI	CCGG	4 cut(s)	96, 188, 197, 564
MspR9I	CCNGG	1 cut(s)	242
MvaI	CCWGG	1 cut(s)	242
MwoI	GCNNNNNNNGC	4 cut(s)	101, 193, 202, 501
NarI	GGCGCC	1 cut(s)	737
NdeII	GATC	3 cut(s)	246, 276, 394
NlaIII	CATG	4 cut(s)	462, 522, 535, 674
NlaIV	GGNNCC	2 cut(s)	6, 738
NmuCI	GTSAC	2 cut(s)	82, 464
NspI	RCATGY	1 cut(s)	674
PciI	ACATGT	1 cut(s)	670
PdmI	GAANNNNTTC	2 cut(s)	660, 672
PflMI	CCANNNNNTGG	1 cut(s)	733
PfoI	TCCNGGA	1 cut(s)	240
PkrI	GCNGC	2 cut(s)	590, 757
PleI	GAGTC	1 cut(s)	471
PluTI	GGCGCC	1 cut(s)	740
PpsI	GAGTC	1 cut(s)	471
PscI	ACATGT	1 cut(s)	670
Psp6I	CCWGG	1 cut(s)	240
PspGI	CCWGG	1 cut(s)	240
PspN4I	GGNNCC	2 cut(s)	6, 738
PspPI	GGNCC	2 cut(s)	75, 139
PstNI	CAGNNNCTG	1 cut(s)	619
RsaI	GTAC	2 cut(s)	52, 344
RsaNI	GTAC	2 cut(s)	51, 343
SatI	GCNGC	2 cut(s)	589, 756
Sau3AI	GATC	3 cut(s)	246, 276, 394
Sau96I	GGNCC	2 cut(s)	75, 139
SchI	GAGTC	1 cut(s)	472
ScrFI	CCNGG	1 cut(s)	242
SduI	GDGCHC	3 cut(s)	207, 506, 539
SetI	ASST	9 cut(s)	195, 256, 321, 402, 475, 516, 718, 754, 760
SfaNI	GCATC	1 cut(s)	355
SfcI	CTRYAG	1 cut(s)	57
SfoI	GGCGCC	1 cut(s)	738
Sse9I	AATT	2 cut(s)	331, 483
SsiI	CCGC	4 cut(s)	220, 368, 527, 589
SspDI	GGCGCC	1 cut(s)	736
SspI	AATATT	1 cut(s)	183
SspMI	CTAG	3 cut(s)	585, 717, 723
StyD4I	CCNGG	1 cut(s)	240
TaaI	ACNGT	3 cut(s)	50, 209, 552
TaiI	ACGT	2 cut(s)	195, 754
TaqI	TCGA	3 cut(s)	249, 314, 579
TasI	AATT	2 cut(s)	331, 483
TauI	GCSGC	1 cut(s)	591
TscAI	CASTG	3 cut(s)	506, 555, 624
TseFI	GTSAC	2 cut(s)	82, 464
TseI	GCWGC	1 cut(s)	755
Tsp45I	GTSAC	2 cut(s)	82, 464
TspDTI	ATGAA	1 cut(s)	507
TspGWI	ACGGA	1 cut(s)	311
TspRI	CASTG	3 cut(s)	506, 555, 624
Van91I	CCANNNNNTGG	1 cut(s)	733
XapI	RAATTY	1 cut(s)	331
XceI	RCATGY	1 cut(s)	674
XmnI	GAANNNNTTC	2 cut(s)	660, 672
XspI	CTAG	3 cut(s)	585, 717, 723

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.