Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr16

Orthogroup ID

OG0001700

Physical Location & Seq

Genomic Coordinates Reverse (-)

8866863 .. 8869152

Gene Structure 2290 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom16g12600.4

Sequence Viewer

CDS Protein Promoter (2k)

Length: 972 bp

ATGTCACCTGCAGAGACAAACGGTTCAAAGAGGGCCTATGTGACCTTCTTGGCTGGCAATGGAGACTATTGGAAAGGGGTAGTTGGCCTAGCCAAGGGCCTAAGGAAGGCCAAATCTGCATATCCTCTTGTGGTGGCTGTTCTGCCTGATGTTCCTGAGGAACACCTTCAGATTCTTCAGTCTCAAGGATGCATTGTTCATGCAATTGAGCCTGTCTACCCTCCTGAAAACCAAACCCAATTTGCCATGGCTTATTATGTCATCAACTACTCCAAGCTTCGTATTTGGGAGTTTATGGAGTATGAGAAGATGATATACTTGGATGGAGACATTCAAGTGTTTGATAACATTGATCACCTTTTCGACATGCCTGAGGGCAGTTTTTATGCTGTGATGGATTGCTTTTGTGAGAAGACATGGAGTGCGTCTCCACAGTACAAGATTGGATACTGCCAGCAGTGCCCTAAGAAGGTGCAGTGGCCGGCCGAGTTGGGTTCACCACCACCACCTTACTTCAATGCCGGCATGTTTGTCTTTGAGCCTTGTGTTCTAACTTACCATGATCTGCTAGAGACCCTTGAAGTTACCCCTCCTTCCTCGTTCGCCGAGCAGGACTTTTTGAACATGTTCTTCAAGGACATATACAGTCCTATCCCACCTATATACAATCTTGTTTTGGCTATGTTGTGGCGCCACCCTGAGAATGTGGACCTTGACAAAGTGAAGGTTGTGCATTACTGTGCTGCGGGATCAAAACCATGGAGATACACAGGAAAGGAAAAGCATATGGAGAGGGAAGACATAAAGATGCTGGTGAAGTGGTGGTGGGACATTTATGATGACACTTCACTGGATTACAATAATGATGGTCGTGTGGTGAAGGCTGAGGAGCATGTGAAGCTTCCACCCTTTAATTCCGCATTATCTGGGACTGACGATGATGACCAAAGAAGTGTACCATCTGCAGCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000271 GO:0000323 GO:0001775 GO:0002252 GO:0002263 GO:0002274 GO:0002275 GO:0002283 GO:0002366 GO:0002376 GO:0002443 GO:0002444 GO:0002446 GO:0003674 GO:0003824 GO:0005488 GO:0005536 GO:0005575 GO:0005576 GO:0005622 GO:0005623 GO:0005737 GO:0005764 GO:0005773 GO:0005775 GO:0005829 GO:0005975 GO:0005976 GO:0005977 GO:0005978 GO:0005996 GO:0006012 GO:0006073 GO:0006091 GO:0006112 GO:0006810 GO:0006887 GO:0006955 GO:0008150 GO:0008152 GO:0008194 GO:0008378 GO:0008466 GO:0009058 GO:0009059 GO:0009250 GO:0009987 GO:0012505 GO:0015980 GO:0016051 GO:0016192 GO:0016740 GO:0016757 GO:0016758 GO:0019318 GO:0030141 GO:0030246 GO:0031410 GO:0031974 GO:0031982 GO:0031983 GO:0032940 GO:0033692 GO:0034637 GO:0034645 GO:0034774 GO:0035250 GO:0035251 GO:0036094 GO:0036230 GO:0042119 GO:0043170 GO:0043202 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043299 GO:0043312 GO:0044042 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044262 GO:0044264 GO:0044281 GO:0044422 GO:0044424 GO:0044433 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0045055 GO:0045321 GO:0046527 GO:0046903 GO:0047216 GO:0048029 GO:0050896 GO:0051179 GO:0051234 GO:0055114 GO:0060205 GO:0070013 GO:0071704 GO:0097708 GO:0099503 GO:0101002 GO:1901576 GO:1904813

KEGG Pathways

Metabolic & Signaling

ko00052 map00052

Pfam Domains

Protein Families

Glyco_transf_8

Protein Analysis

324

Amino Acids

37.09

Weight (kDa)

4.95

Isoelectric Point (pI)

45.47

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001700)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G60450 AT1G60470
fragaria_vesca	FvH4_4g20790 FvH4_4g34160
malus_domestica	MD13G1093700.v1.1 MD13G1147700.v1.1 MD16G1095000.v1.1
prunus_persica	Prupe.1G111300_v2.0.a1 Prupe.1G251600_v2.0.a1 Prupe.8G258200_v2.0.a1
pyrus_communis	pycom13g08160 pycom13g12730 pycom16g08080 pycom16g08090 pycom16g12600
rosa_chinensis	RchiOBHm_Chr4g0426261 RchiOBHm_Chr4g0443671 RchiOBHm_Chr6g0293551
rosa_laevigata	RLG00000005903 RLG00000007308 RLG00000011942
rosa_multiflora	Rmu_co8279911.1_g000001 Rmu_sc0000730.1_g000037 Rmu_sc0001426.1_g000017 Rmu_sc0032866.1_g000001 Rmu_sc0036604.1_g000001
rosa_roxburghii	Rroxscaffold_5G00368270 Rroxscaffold_5G00384220
rosa_rugosa	Rorug04G0209900 Rorug06G0236400
rosa_samantha	Rh4AG266800 Rh4AG406100 Rh4BG272700 Rh4BG417100 Rh4CG286100 Rh4CG286400 Rh4CG431600 Rh4DG269100 Rh4DG269300 Rh4DG412700 Rh6AG349100 Rh6BG356500 Rh6CG363200 Rh6DG350100
rosa_wichuraiana	Rw4G023060 Rw4G023080 Rw4G034870 Rw6G030370

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	16
Acc36I	ACCTGC	1 cut(s)	16
AccB1I	GGYRCC	1 cut(s)	690
AccI	GTMKAC	1 cut(s)	216
AciI	CCGC	2 cut(s)	746, 918
AclWI	GGATC	1 cut(s)	757
AcoI	YGGCCR	2 cut(s)	479, 483
AcuI	CTGAAG	2 cut(s)	152, 161
AcyI	GRCGYC	1 cut(s)	691
AfaI	GTAC	2 cut(s)	437, 957
AfiI	CCNNNNNNNGG	3 cut(s)	94, 106, 469
AflIII	ACRYGT	1 cut(s)	624
AgsI	TTSAA	6 cut(s)	27, 335, 517, 581, 622, 634
AloI	GAACNNNNNNTCC	2 cut(s)	180, 212
AluBI	AGCT	3 cut(s)	277, 901, 968
AluI	AGCT	3 cut(s)	277, 901, 968
Alw26I	GTCTC	6 cut(s)	8, 57, 186, 321, 432, 566
AlwI	GGATC	1 cut(s)	757
AoxI	GGCC	6 cut(s)	33, 85, 97, 108, 479, 483
ApeKI	GCWGC	2 cut(s)	743, 965
Asp700I	GAANNNNTTC	2 cut(s)	165, 626
AspLEI	GCGC	1 cut(s)	693
AspS9I	GGNCC	3 cut(s)	33, 97, 709
AsuHPI	GGTGA	4 cut(s)	347, 489, 826, 889
AvaII	GGWCC	1 cut(s)	709
AxyI	CCTNAGG	3 cut(s)	101, 156, 372
BaeGI	GKGCMC	1 cut(s)	464
BanI	GGYRCC	1 cut(s)	690
BarI	GAAGNNNNNNTAC	2 cut(s)	299, 331
BbsI	GAAGAC	2 cut(s)	419, 804
BbvCI	CCTCAGC	1 cut(s)	885
BbvI	GCAGC	1 cut(s)	730
BccI	CCATC	4 cut(s)	317, 388, 860, 967
BciVI	GTATCC	1 cut(s)	440
BclI	TGATCA	1 cut(s)	352
BcoDI	GTCTC	6 cut(s)	8, 57, 186, 321, 432, 566
BfaI	CTAG	2 cut(s)	89, 569
BfmI	CTRYAG	2 cut(s)	9, 963
BfoI	RGCGCY	1 cut(s)	694
BfuAI	ACCTGC	1 cut(s)	16
BfuI	GTATCC	1 cut(s)	440
BisI	GCNGC	2 cut(s)	744, 966
BlsI	GCNGC	2 cut(s)	745, 967
Bme18I	GGWCC	1 cut(s)	709
BmgT120I	GGNCC	3 cut(s)	33, 97, 709
BmiI	GGNNCC	1 cut(s)	692
BmsI	GCATC	2 cut(s)	179, 798
BpiI	GAAGAC	2 cut(s)	419, 804
BplI	GAGNNNNNCTC	2 cut(s)	412, 444
Bpu10I	CCTNAGC	1 cut(s)	885
BpuEI	CTTGAG	1 cut(s)	168
BsaHI	GRCGYC	1 cut(s)	691
BsaI	GGTCTC	1 cut(s)	566
BsaJI	CCNNGG	3 cut(s)	93, 246, 758
Bsc4I	CCNNNNNNNGG	3 cut(s)	94, 106, 469
Bse118I	RCCGGY	2 cut(s)	481, 521
Bse1I	ACTGG	1 cut(s)	855
Bse21I	CCTNAGG	3 cut(s)	101, 156, 372
Bse3DI	GCAATG	1 cut(s)	64
BseDI	CCNNGG	3 cut(s)	93, 246, 758
BseGI	GGATG	2 cut(s)	194, 328
BseLI	CCNNNNNNNGG	3 cut(s)	94, 106, 469
BseMI	GCAATG	1 cut(s)	64
BseMII	CTCAG	4 cut(s)	147, 363, 690, 876
BseNI	ACTGG	1 cut(s)	855
BseRI	GAGGAG	1 cut(s)	902
BseSI	GKGCMC	1 cut(s)	464
BseX3I	CGGCCG	1 cut(s)	483
BseXI	GCAGC	1 cut(s)	730
BsgI	GTGCAG	1 cut(s)	494
Bsh1285I	CGRYCG	1 cut(s)	486
BshFI	GGCC	6 cut(s)	35, 87, 99, 110, 481, 485
BshNI	GGYRCC	1 cut(s)	690
BsiEI	CGRYCG	1 cut(s)	486
BsiSI	CCGG	2 cut(s)	482, 522
BslFI	GGGAC	2 cut(s)	842, 943
BslI	CCNNNNNNNGG	3 cut(s)	94, 106, 469
BsmAI	GTCTC	6 cut(s)	8, 57, 186, 321, 432, 566
BsmBI	CGTCTC	1 cut(s)	432
BsmFI	GGGAC	2 cut(s)	842, 943
BsnI	GGCC	6 cut(s)	35, 87, 99, 110, 481, 485
Bso31I	GGTCTC	1 cut(s)	566
Bsp1286I	GDGCHC	1 cut(s)	464
Bsp143I	GATC	3 cut(s)	352, 562, 749
Bsp19I	CCATGG	2 cut(s)	246, 758
BspACI	CCGC	2 cut(s)	746, 918
BspANI	GGCC	6 cut(s)	35, 87, 99, 110, 481, 485
BspCNI	CTCAG	4 cut(s)	148, 364, 691, 877
BspLI	GGNNCC	1 cut(s)	692
BspMAI	CTGCAG	2 cut(s)	13, 967
BspMI	ACCTGC	1 cut(s)	16
BspPI	GGATC	1 cut(s)	757
BspT107I	GGYRCC	1 cut(s)	690
BspTNI	GGTCTC	1 cut(s)	566
BsrDI	GCAATG	1 cut(s)	64
BsrFI	RCCGGY	2 cut(s)	481, 521
BsrI	ACTGG	1 cut(s)	855
BssAI	RCCGGY	2 cut(s)	481, 521
BssECI	CCNNGG	3 cut(s)	93, 246, 758
BssMI	GATC	3 cut(s)	352, 562, 749
BssNI	GRCGYC	1 cut(s)	691
BssT1I	CCWWGG	3 cut(s)	93, 246, 758
Bst4CI	ACNGT	4 cut(s)	23, 435, 647, 740
BstACI	GRCGYC	1 cut(s)	691
BstC8I	GCNNGC	4 cut(s)	55, 455, 483, 523
BstDEI	CTNAG	6 cut(s)	101, 156, 372, 465, 699, 885
BstDSI	CCRYGG	2 cut(s)	246, 758
BstENI	CCTNNNNNAGG	2 cut(s)	92, 104
BstF5I	GGATG	2 cut(s)	194, 328
BstH2I	RGCGCY	1 cut(s)	694
BstHHI	GCGC	1 cut(s)	693
BstKTI	GATC	3 cut(s)	355, 565, 752
BstMAI	GTCTC	6 cut(s)	8, 57, 186, 321, 432, 566
BstMBI	GATC	3 cut(s)	352, 562, 749
BstMCI	CGRYCG	1 cut(s)	486
BstMWI	GCNNNNNNNGC	3 cut(s)	116, 459, 898
BstNSI	RCATGY	4 cut(s)	370, 529, 628, 896
BstSFI	CTRYAG	2 cut(s)	9, 963
BstSLI	GKGCMC	1 cut(s)	464
BstV1I	GCAGC	1 cut(s)	730
BstV2I	GAAGAC	2 cut(s)	419, 804
BstZI	CGGCCG	1 cut(s)	483
Bsu36I	CCTNAGG	3 cut(s)	101, 156, 372
BsuI	GTATCC	1 cut(s)	440
BsuRI	GGCC	6 cut(s)	35, 87, 99, 110, 481, 485
BtgI	CCRYGG	2 cut(s)	246, 758
BtsCI	GGATG	2 cut(s)	194, 328
BtsI	GCAGTG	2 cut(s)	464, 482
BtsIMutI	CAGTG	3 cut(s)	464, 482, 848
BveI	ACCTGC	1 cut(s)	16
Cac8I	GCNNGC	4 cut(s)	55, 455, 483, 523
CfoI	GCGC	1 cut(s)	693
Cfr10I	RCCGGY	2 cut(s)	481, 521
Cfr13I	GGNCC	3 cut(s)	33, 97, 709
CseI	GACGC	1 cut(s)	414
Csp6I	GTAC	2 cut(s)	436, 956
CviAII	CATG	9 cut(s)	200, 247, 367, 417, 526, 560, 625, 759, 893
CviQI	GTAC	2 cut(s)	436, 956
DdeI	CTNAG	6 cut(s)	101, 156, 372, 465, 699, 885
DinI	GGCGCC	1 cut(s)	692
DpnI	GATC	3 cut(s)	354, 564, 751
DpnII	GATC	3 cut(s)	352, 562, 749
EaeI	YGGCCR	2 cut(s)	479, 483
EagI	CGGCCG	1 cut(s)	483
EclXI	CGGCCG	1 cut(s)	483
Eco130I	CCWWGG	3 cut(s)	93, 246, 758
Eco31I	GGTCTC	1 cut(s)	566
Eco47I	GGWCC	1 cut(s)	709
Eco52I	CGGCCG	1 cut(s)	483
Eco57I	CTGAAG	2 cut(s)	152, 161
Eco81I	CCTNAGG	3 cut(s)	101, 156, 372
EcoNI	CCTNNNNNAGG	2 cut(s)	92, 104
EcoO109I	RGGNCCY	2 cut(s)	33, 97
EcoT14I	CCWWGG	3 cut(s)	93, 246, 758
EcoT22I	ATGCAT	1 cut(s)	194
EgeI	GGCGCC	1 cut(s)	692
EheI	GGCGCC	1 cut(s)	692
ErhI	CCWWGG	3 cut(s)	93, 246, 758
Esp3I	CGTCTC	1 cut(s)	432
FaeI	CATG	9 cut(s)	203, 250, 370, 420, 529, 563, 628, 762, 896
FaqI	GGGAC	2 cut(s)	842, 943
FatI	CATG	9 cut(s)	199, 246, 366, 416, 525, 559, 624, 758, 892
FauI	CCCGC	1 cut(s)	739
FauNDI	CATATG	1 cut(s)	786
FbaI	TGATCA	1 cut(s)	352
FblI	GTMKAC	1 cut(s)	216
Fnu4HI	GCNGC	2 cut(s)	744, 966
FokI	GGATG	2 cut(s)	201, 335
FseI	GGCCGGCC	1 cut(s)	485
Fsp4HI	GCNGC	2 cut(s)	744, 966
FspBI	CTAG	2 cut(s)	89, 569
GlaI	GCGC	1 cut(s)	692
GluI	GCNGC	2 cut(s)	744, 966
HaeII	RGCGCY	1 cut(s)	694
HaeIII	GGCC	6 cut(s)	35, 87, 99, 110, 481, 485
HapII	CCGG	2 cut(s)	482, 522
HgaI	GACGC	1 cut(s)	414
HhaI	GCGC	1 cut(s)	693
Hin1I	GRCGYC	1 cut(s)	691
Hin1II	CATG	9 cut(s)	203, 250, 370, 420, 529, 563, 628, 762, 896
Hin6I	GCGC	1 cut(s)	691
HinP1I	GCGC	1 cut(s)	691
HindIII	AAGCTT	2 cut(s)	275, 899
HinfI	GANTC	1 cut(s)	172
HpaII	CCGG	2 cut(s)	482, 522
HphI	GGTGA	4 cut(s)	347, 489, 826, 889
Hpy166II	GTNNAC	4 cut(s)	217, 497, 709, 956
Hpy188I	TCNGA	1 cut(s)	171
Hpy188III	TCNNGA	2 cut(s)	155, 224
Hpy8I	GTNNAC	4 cut(s)	217, 497, 709, 956
HpyAV	CCTTC	7 cut(s)	55, 100, 176, 463, 603, 718, 874
HpyCH4III	ACNGT	4 cut(s)	23, 435, 647, 740
HpyCH4V	TGCA	7 cut(s)	11, 119, 192, 203, 475, 733, 965
HpyF10VI	GCNNNNNNNGC	3 cut(s)	116, 459, 898
HpyF3I	CTNAG	6 cut(s)	101, 156, 372, 465, 699, 885
Hsp92I	GRCGYC	1 cut(s)	691
Hsp92II	CATG	9 cut(s)	203, 250, 370, 420, 529, 563, 628, 762, 896
HspAI	GCGC	1 cut(s)	691
KasI	GGCGCC	1 cut(s)	690
KroI	GCCGGC	2 cut(s)	481, 521
KroNI	GCCGGC	2 cut(s)	483, 523
Ksp22I	TGATCA	1 cut(s)	352
Kzo9I	GATC	3 cut(s)	352, 562, 749
LmnI	GCTCC	1 cut(s)	889
Lsp1109I	GCAGC	1 cut(s)	730
LweI	GCATC	2 cut(s)	179, 798
MaeI	CTAG	2 cut(s)	89, 569
MaeIII	GTNAC	3 cut(s)	3, 40, 583
MalI	GATC	3 cut(s)	354, 564, 751
MboI	GATC	3 cut(s)	352, 562, 749
MboII	GAAGA	5 cut(s)	167, 319, 424, 622, 809
MfeI	CAATTG	1 cut(s)	204
MhlI	GDGCHC	1 cut(s)	464
MluCI	AATT	3 cut(s)	204, 239, 913
Mly113I	GGCGCC	1 cut(s)	691
MnlI	CCTC	9 cut(s)	24, 135, 151, 231, 367, 600, 607, 786, 880
Mph1103I	ATGCAT	1 cut(s)	194
MroNI	GCCGGC	2 cut(s)	481, 521
MroXI	GAANNNNTTC	2 cut(s)	165, 626
MseI	TTAA	1 cut(s)	912
MslI	CAYNNNNRTG	3 cut(s)	335, 738, 806
MspI	CCGG	2 cut(s)	482, 522
MunI	CAATTG	1 cut(s)	204
MwoI	GCNNNNNNNGC	3 cut(s)	116, 459, 898
NaeI	GCCGGC	2 cut(s)	483, 523
NarI	GGCGCC	1 cut(s)	691
NcoI	CCATGG	2 cut(s)	246, 758
NdeI	CATATG	1 cut(s)	786
NdeII	GATC	3 cut(s)	352, 562, 749
NgoMIV	GCCGGC	2 cut(s)	481, 521
NlaIII	CATG	9 cut(s)	203, 250, 370, 420, 529, 563, 628, 762, 896
NlaIV	GGNNCC	1 cut(s)	692
NmeAIII	GCCGAG	2 cut(s)	511, 631
NmuCI	GTSAC	2 cut(s)	3, 40
NsiI	ATGCAT	1 cut(s)	194
NspI	RCATGY	4 cut(s)	370, 529, 628, 896
PaqCI	CACCTGC	1 cut(s)	16
PciI	ACATGT	1 cut(s)	624
PdiI	GCCGGC	2 cut(s)	483, 523
PdmI	GAANNNNTTC	2 cut(s)	165, 626
PfeI	GAWTC	1 cut(s)	172
PkrI	GCNGC	2 cut(s)	745, 967
PluTI	GGCGCC	1 cut(s)	694
PscI	ACATGT	1 cut(s)	624
PspN4I	GGNNCC	1 cut(s)	692
PspPI	GGNCC	3 cut(s)	33, 97, 709
PstI	CTGCAG	2 cut(s)	13, 967
RigI	GGCCGGCC	1 cut(s)	485
RsaI	GTAC	2 cut(s)	437, 957
RsaNI	GTAC	2 cut(s)	436, 956
RseI	CAYNNNNRTG	3 cut(s)	335, 738, 806
SaqAI	TTAA	1 cut(s)	912
SatI	GCNGC	2 cut(s)	744, 966
Sau3AI	GATC	3 cut(s)	352, 562, 749
Sau96I	GGNCC	3 cut(s)	33, 97, 709
SduI	GDGCHC	1 cut(s)	464
SfaNI	GCATC	2 cut(s)	179, 798
SfcI	CTRYAG	2 cut(s)	9, 963
SfoI	GGCGCC	1 cut(s)	692
SinI	GGWCC	1 cut(s)	709
SmiMI	CAYNNNNRTG	3 cut(s)	335, 738, 806
SmlI	CTYRAG	1 cut(s)	183
SmoI	CTYRAG	1 cut(s)	183
Sse9I	AATT	3 cut(s)	204, 239, 913
SsiI	CCGC	2 cut(s)	746, 918
SspDI	GGCGCC	1 cut(s)	690
SspMI	CTAG	2 cut(s)	89, 569
StyI	CCWWGG	3 cut(s)	93, 246, 758
TaaI	ACNGT	4 cut(s)	23, 435, 647, 740
TaqI	TCGA	1 cut(s)	363
TasI	AATT	3 cut(s)	204, 239, 913
TatI	WGTACW	1 cut(s)	435
TfiI	GAWTC	1 cut(s)	172
Tru1I	TTAA	1 cut(s)	912
Tru9I	TTAA	1 cut(s)	912
TscAI	CASTG	3 cut(s)	464, 482, 855
TseFI	GTSAC	2 cut(s)	3, 40
TseI	GCWGC	2 cut(s)	743, 965
Tsp45I	GTSAC	2 cut(s)	3, 40
TspDTI	ATGAA	1 cut(s)	188
TspRI	CASTG	3 cut(s)	464, 482, 855
VpaK11BI	GGWCC	1 cut(s)	709
XagI	CCTNNNNNAGG	2 cut(s)	92, 104
XceI	RCATGY	4 cut(s)	370, 529, 628, 896
XmiI	GTMKAC	1 cut(s)	216
XmnI	GAANNNNTTC	2 cut(s)	165, 626
XspI	CTAG	2 cut(s)	89, 569
Zsp2I	ATGCAT	1 cut(s)	194

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.