Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr16

Orthogroup ID

OG0001700

Physical Location & Seq

Genomic Coordinates Reverse (-)

5322500 .. 5323981

Gene Structure 1482 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom16g08080.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1029 bp

ATGGCACCCCCAGAAGTTCCAGCTGATGTGTTTCAGTCCACAAGGAAAGTCTCAACGCTCACTACTACTACTACAGGCTGCTCCAAGAGGGCATTTGTGACGTTTTTAGCTGGAGATGGTGATTATTTCAAAGGGGTTGTGGGTTTGGCTAAGGGCTTGCGCAGAGTTAAGAGTGAGTACGCTCTTGTGGTTGCGATATTACCGGACGTGCCAGAGGAGCACCGTGAGATTTTACGTTCTCAGGGTTGTATTGTTCATGAGATCGAACCTATTTATCCTCCTGAGAACCAGATTAAGTTTGCAATGGCCTACTATGTCGTCAACTACTCCAAGCTCCGTATTTGGAATTTTGAGGAGTACAGCAAAATGATATATTTGGATGCGGATATCCAAGTGTTTGAGAACATTGATCATCTGTTTGATACGCCTGATGGCTACTTCTATGCTGTGATGGACTGCTTCTGTGAGAAAACATGGAGTCGCTCACCACAATACACAATCGGGTATTGCCAGCAGTGCCCTGACAAGGTTTCATGGCCTGCTGAGATGGGCTCTCCTCCTCCGCTCTACTTCAACGCCGGCATGTTCGTGTTCGAGCCTAGCCGCTTGACATACGACGGCCTTCTTCAGACTCTCAAAGTCGTCCCACCCACCCCTTTCGCAGAACAAGATTTCTTGAACAAGTTCTTCCAAAAGACGTACAAACCAATCCCAAATATATACAACTTAGTTCTTGCCAATCTATGGCGCCACCCAGAGAACGTGCAGCTTGATCAAGTAAACGTAGTTCACTACTGTGCTGCTGGATCAAAACCATGGAGGTATACCGGCAAGGAAGCTAACATGGACAGAGAGGACATCAAGGTGTTAGTGGCCAAATGGTGGGAAATTTACAACGACGAGTCCCTGGATTTCAAGGCTGAAACCCCAGCAGCTGCGGAGGAAGAAACTTTCTCGAAGCCGTCGTCGATCATGGCTTCCATGCCGGAGCCTACGATTCCCTATATTCCTGCTCCATCTGCTGCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000271 GO:0003674 GO:0003824 GO:0005488 GO:0005536 GO:0005975 GO:0005976 GO:0005977 GO:0005978 GO:0005996 GO:0006012 GO:0006073 GO:0006091 GO:0006112 GO:0006950 GO:0006979 GO:0008150 GO:0008152 GO:0008194 GO:0008378 GO:0008466 GO:0009058 GO:0009059 GO:0009250 GO:0009987 GO:0015980 GO:0016051 GO:0016740 GO:0016757 GO:0016758 GO:0019318 GO:0030246 GO:0033692 GO:0034637 GO:0034645 GO:0035250 GO:0035251 GO:0036094 GO:0043170 GO:0044042 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044262 GO:0044264 GO:0044281 GO:0046527 GO:0047216 GO:0048029 GO:0050896 GO:0055114 GO:0071704 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00052 map00052

Pfam Domains

Protein Families

Glyco_transf_8

Protein Analysis

343

Amino Acids

39.04

Weight (kDa)

5.06

Isoelectric Point (pI)

53.43

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001700)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G60450 AT1G60470
fragaria_vesca	FvH4_4g20790 FvH4_4g34160
malus_domestica	MD13G1093700.v1.1 MD13G1147700.v1.1 MD16G1095000.v1.1
prunus_persica	Prupe.1G111300_v2.0.a1 Prupe.1G251600_v2.0.a1 Prupe.8G258200_v2.0.a1
pyrus_communis	pycom13g08160 pycom13g12730 pycom16g08080 pycom16g08090 pycom16g12600
rosa_chinensis	RchiOBHm_Chr4g0426261 RchiOBHm_Chr4g0443671 RchiOBHm_Chr6g0293551
rosa_laevigata	RLG00000005903 RLG00000007308 RLG00000011942
rosa_multiflora	Rmu_co8279911.1_g000001 Rmu_sc0000730.1_g000037 Rmu_sc0001426.1_g000017 Rmu_sc0032866.1_g000001 Rmu_sc0036604.1_g000001
rosa_roxburghii	Rroxscaffold_5G00368270 Rroxscaffold_5G00384220
rosa_rugosa	Rorug04G0209900 Rorug06G0236400
rosa_samantha	Rh4AG266800 Rh4AG406100 Rh4BG272700 Rh4BG417100 Rh4CG286100 Rh4CG286400 Rh4CG431600 Rh4DG269100 Rh4DG269300 Rh4DG412700 Rh6AG349100 Rh6BG356500 Rh6CG363200 Rh6DG350100
rosa_wichuraiana	Rw4G023060 Rw4G023080 Rw4G034870 Rw6G030370

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	161
AccB1I	GGYRCC	2 cut(s)	4, 747
AccB7I	CCANNNNNTGG	2 cut(s)	744, 882
AccBSI	CCGCTC	1 cut(s)	565
AccI	GTMKAC	1 cut(s)	824
AciI	CCGC	4 cut(s)	383, 563, 604, 938
AclWI	GGATC	1 cut(s)	814
AcoI	YGGCCR	1 cut(s)	873
AcsI	RAATTY	2 cut(s)	346, 888
AcuI	CTGAAG	1 cut(s)	611
AcyI	GRCGYC	1 cut(s)	748
AfaI	GTAC	3 cut(s)	179, 359, 701
AfiI	CCNNNNNNNGG	3 cut(s)	526, 744, 882
AgsI	TTSAA	4 cut(s)	130, 574, 679, 916
AjiI	CACGTC	1 cut(s)	208
AjnI	CCWGG	1 cut(s)	906
AleI	CACNNNNGTG	1 cut(s)	795
AluBI	AGCT	6 cut(s)	23, 110, 334, 769, 839, 935
AluI	AGCT	6 cut(s)	23, 110, 334, 769, 839, 935
Alw21I	GWGCWC	1 cut(s)	222
Alw26I	GTCTC	1 cut(s)	55
AlwI	GGATC	1 cut(s)	814
AlwNI	CAGNNNCTG	1 cut(s)	935
AoxI	GGCC	4 cut(s)	306, 536, 619, 873
ApeKI	GCWGC	6 cut(s)	78, 766, 800, 932, 935, 1022
ApoI	RAATTY	2 cut(s)	346, 888
ArsI	GACNNNNNNTTYG	2 cut(s)	950, 982
Asp700I	GAANNNNTTC	1 cut(s)	683
AspLEI	GCGC	2 cut(s)	162, 750
AsuHPI	GGTGA	2 cut(s)	131, 477
BaeGI	GKGCMC	1 cut(s)	521
BalI	TGGCCA	1 cut(s)	875
BanI	GGYRCC	2 cut(s)	4, 747
BanII	GRGCYC	1 cut(s)	554
Bbv12I	GWGCWC	1 cut(s)	222
BbvI	GCAGC	6 cut(s)	65, 778, 787, 922, 944, 1009
BccI	CCATC	5 cut(s)	110, 425, 445, 541, 1024
BceAI	ACGGC	2 cut(s)	634, 946
BciT130I	CCWGG	1 cut(s)	908
BclI	TGATCA	2 cut(s)	409, 772
BcoDI	GTCTC	1 cut(s)	55
BfaI	CTAG	1 cut(s)	600
BfmI	CTRYAG	1 cut(s)	72
BfoI	RGCGCY	1 cut(s)	751
BisI	GCNGC	7 cut(s)	79, 604, 767, 801, 933, 936, 1023
BlsI	GCNGC	7 cut(s)	80, 605, 768, 802, 934, 937, 1024
Bme1390I	CCNGG	1 cut(s)	908
BmgBI	CACGTC	1 cut(s)	208
BmiI	GGNNCC	3 cut(s)	6, 749, 990
BmrFI	CCNGG	1 cut(s)	908
BmsI	GCATC	1 cut(s)	370
BplI	GAGNNNNNCTC	2 cut(s)	536, 568
BpmI	CTGGAG	1 cut(s)	132
Bpu10I	CCTNAGC	1 cut(s)	150
BsaHI	GRCGYC	1 cut(s)	748
BsaJI	CCNNGG	2 cut(s)	815, 906
BsaWI	WCCGGW	1 cut(s)	202
Bsc4I	CCNNNNNNNGG	3 cut(s)	526, 744, 882
Bse118I	RCCGGY	2 cut(s)	578, 827
Bse3DI	GCAATG	1 cut(s)	309
BseBI	CCWGG	1 cut(s)	908
BseDI	CCNNGG	2 cut(s)	815, 906
BseGI	GGATG	1 cut(s)	385
BseLI	CCNNNNNNNGG	3 cut(s)	526, 744, 882
BseMI	GCAATG	1 cut(s)	309
BseMII	CTCAG	3 cut(s)	254, 273, 534
BseRI	GAGGAG	4 cut(s)	230, 368, 546, 549
BseSI	GKGCMC	1 cut(s)	521
BseXI	GCAGC	6 cut(s)	65, 778, 787, 922, 944, 1009
BseYI	CCCAGC	1 cut(s)	928
BsgI	GTGCAG	1 cut(s)	785
BshFI	GGCC	4 cut(s)	308, 538, 621, 875
BshNI	GGYRCC	2 cut(s)	4, 747
BsiHKAI	GWGCWC	1 cut(s)	222
BsiSI	CCGG	4 cut(s)	203, 579, 828, 986
BslFI	GGGAC	2 cut(s)	629, 889
BslI	CCNNNNNNNGG	3 cut(s)	526, 744, 882
BsmAI	GTCTC	1 cut(s)	55
BsmFI	GGGAC	2 cut(s)	629, 889
BsnI	GGCC	4 cut(s)	308, 538, 621, 875
Bsp1286I	GDGCHC	3 cut(s)	222, 521, 554
Bsp143I	GATC	5 cut(s)	261, 409, 772, 806, 969
Bsp19I	CCATGG	1 cut(s)	815
BspACI	CCGC	4 cut(s)	383, 563, 604, 938
BspANI	GGCC	4 cut(s)	308, 538, 621, 875
BspCNI	CTCAG	3 cut(s)	253, 274, 535
BspHI	TCATGA	1 cut(s)	256
BspLI	GGNNCC	3 cut(s)	6, 749, 990
BspPI	GGATC	1 cut(s)	814
BspT107I	GGYRCC	2 cut(s)	4, 747
BsrBI	CCGCTC	1 cut(s)	565
BsrDI	GCAATG	1 cut(s)	309
BsrFI	RCCGGY	2 cut(s)	578, 827
BssAI	RCCGGY	2 cut(s)	578, 827
BssECI	CCNNGG	2 cut(s)	815, 906
BssMI	GATC	5 cut(s)	261, 409, 772, 806, 969
BssNAI	GTATAC	1 cut(s)	825
BssNI	GRCGYC	1 cut(s)	748
BssT1I	CCWWGG	1 cut(s)	815
Bst1107I	GTATAC	1 cut(s)	825
Bst2UI	CCWGG	1 cut(s)	908
Bst4CI	ACNGT	2 cut(s)	224, 797
BstACI	GRCGYC	1 cut(s)	748
BstC8I	GCNNGC	4 cut(s)	158, 512, 540, 580
BstDEI	CTNAG	5 cut(s)	150, 240, 282, 543, 727
BstDSI	CCRYGG	1 cut(s)	815
BstF5I	GGATG	1 cut(s)	385
BstH2I	RGCGCY	1 cut(s)	751
BstHHI	GCGC	2 cut(s)	162, 750
BstKTI	GATC	5 cut(s)	264, 412, 775, 809, 972
BstMAI	GTCTC	1 cut(s)	55
BstMBI	GATC	5 cut(s)	261, 409, 772, 806, 969
BstMWI	GCNNNNNNNGC	3 cut(s)	217, 516, 1019
BstNI	CCWGG	1 cut(s)	908
BstNSI	RCATGY	1 cut(s)	586
BstSCI	CCNGG	1 cut(s)	906
BstSFI	CTRYAG	1 cut(s)	72
BstSLI	GKGCMC	1 cut(s)	521
BstV1I	GCAGC	6 cut(s)	65, 778, 787, 922, 944, 1009
BstZ17I	GTATAC	1 cut(s)	825
BsuRI	GGCC	4 cut(s)	308, 538, 621, 875
BtgI	CCRYGG	1 cut(s)	815
BtrI	CACGTC	1 cut(s)	208
BtsCI	GGATG	1 cut(s)	385
BtsI	GCAGTG	1 cut(s)	521
BtsIMutI	CAGTG	1 cut(s)	521
Cac8I	GCNNGC	4 cut(s)	158, 512, 540, 580
CaiI	CAGNNNCTG	1 cut(s)	935
CciI	TCATGA	1 cut(s)	256
CfoI	GCGC	2 cut(s)	162, 750
Cfr10I	RCCGGY	2 cut(s)	578, 827
Csp6I	GTAC	3 cut(s)	178, 358, 700
CviAII	CATG	8 cut(s)	257, 474, 534, 583, 816, 844, 973, 982
CviQI	GTAC	3 cut(s)	178, 358, 700
DdeI	CTNAG	5 cut(s)	150, 240, 282, 543, 727
DinI	GGCGCC	1 cut(s)	749
DpnI	GATC	5 cut(s)	263, 411, 774, 808, 971
DpnII	GATC	5 cut(s)	261, 409, 772, 806, 969
EaeI	YGGCCR	1 cut(s)	873
Eco130I	CCWWGG	1 cut(s)	815
Eco24I	GRGCYC	1 cut(s)	554
Eco32I	GATATC	1 cut(s)	388
Eco57I	CTGAAG	1 cut(s)	611
EcoRII	CCWGG	1 cut(s)	906
EcoRV	GATATC	1 cut(s)	388
EcoT14I	CCWWGG	1 cut(s)	815
EcoT38I	GRGCYC	1 cut(s)	554
EgeI	GGCGCC	1 cut(s)	749
EheI	GGCGCC	1 cut(s)	749
ErhI	CCWWGG	1 cut(s)	815
FaeI	CATG	8 cut(s)	260, 477, 537, 586, 819, 847, 976, 985
FaqI	GGGAC	2 cut(s)	629, 889
FatI	CATG	8 cut(s)	256, 473, 533, 582, 815, 843, 972, 981
FbaI	TGATCA	2 cut(s)	409, 772
FblI	GTMKAC	1 cut(s)	824
Fnu4HI	GCNGC	7 cut(s)	79, 604, 767, 801, 933, 936, 1023
FokI	GGATG	1 cut(s)	392
FriOI	GRGCYC	1 cut(s)	554
Fsp4HI	GCNGC	7 cut(s)	79, 604, 767, 801, 933, 936, 1023
FspBI	CTAG	1 cut(s)	600
FspI	TGCGCA	1 cut(s)	161
GlaI	GCGC	2 cut(s)	161, 749
GluI	GCNGC	7 cut(s)	79, 604, 767, 801, 933, 936, 1023
GsaI	CCCAGC	1 cut(s)	932
GsuI	CTGGAG	1 cut(s)	132
HaeII	RGCGCY	1 cut(s)	751
HaeIII	GGCC	4 cut(s)	308, 538, 621, 875
HapII	CCGG	4 cut(s)	203, 579, 828, 986
HhaI	GCGC	2 cut(s)	162, 750
Hin1I	GRCGYC	1 cut(s)	748
Hin1II	CATG	8 cut(s)	260, 477, 537, 586, 819, 847, 976, 985
Hin6I	GCGC	2 cut(s)	160, 748
HinP1I	GCGC	2 cut(s)	160, 748
HincII	GTYRAC	1 cut(s)	322
HindII	GTYRAC	1 cut(s)	322
HinfI	GANTC	4 cut(s)	478, 631, 902, 997
HpaII	CCGG	4 cut(s)	203, 579, 828, 986
HphI	GGTGA	2 cut(s)	131, 477
Hpy166II	GTNNAC	5 cut(s)	39, 322, 781, 790, 825
Hpy188I	TCNGA	1 cut(s)	630
Hpy188III	TCNNGA	4 cut(s)	257, 281, 676, 955
Hpy8I	GTNNAC	5 cut(s)	39, 322, 781, 790, 825
Hpy99I	CGWCG	4 cut(s)	620, 902, 967, 970
HpyAV	CCTTC	1 cut(s)	632
HpyCH4III	ACNGT	2 cut(s)	224, 797
HpyCH4IV	ACGT	6 cut(s)	101, 207, 235, 698, 762, 783
HpyCH4V	TGCA	2 cut(s)	302, 766
HpyF10VI	GCNNNNNNNGC	3 cut(s)	217, 516, 1019
HpyF3I	CTNAG	5 cut(s)	150, 240, 282, 543, 727
HpySE526I	ACGT	6 cut(s)	101, 207, 235, 698, 762, 783
Hsp92I	GRCGYC	1 cut(s)	748
Hsp92II	CATG	8 cut(s)	260, 477, 537, 586, 819, 847, 976, 985
HspAI	GCGC	2 cut(s)	160, 748
KasI	GGCGCC	1 cut(s)	747
KroI	GCCGGC	1 cut(s)	578
KroNI	GCCGGC	1 cut(s)	580
Ksp22I	TGATCA	2 cut(s)	409, 772
Kzo9I	GATC	5 cut(s)	261, 409, 772, 806, 969
LmnI	GCTCC	5 cut(s)	86, 217, 339, 988, 1018
Lsp1109I	GCAGC	6 cut(s)	65, 778, 787, 922, 944, 1009
LweI	GCATC	1 cut(s)	370
MaeI	CTAG	1 cut(s)	600
MaeII	ACGT	6 cut(s)	101, 207, 235, 698, 762, 783
MaeIII	GTNAC	1 cut(s)	97
MalI	GATC	5 cut(s)	263, 411, 774, 808, 971
MbiI	CCGCTC	1 cut(s)	565
MboI	GATC	5 cut(s)	261, 409, 772, 806, 969
MboII	GAAGA	3 cut(s)	617, 679, 956
MhlI	GDGCHC	3 cut(s)	222, 521, 554
MlsI	TGGCCA	1 cut(s)	875
MluCI	AATT	2 cut(s)	346, 888
MluNI	TGGCCA	1 cut(s)	875
Mly113I	GGCGCC	1 cut(s)	748
MlyI	GAGTC	3 cut(s)	487, 625, 911
MnlI	CCTC	9 cut(s)	81, 208, 288, 346, 567, 570, 813, 847, 934
Mox20I	TGGCCA	1 cut(s)	875
MroNI	GCCGGC	1 cut(s)	578
MroXI	GAANNNNTTC	1 cut(s)	683
MscI	TGGCCA	1 cut(s)	875
MseI	TTAA	2 cut(s)	168, 294
MslI	CAYNNNNRTG	3 cut(s)	587, 795, 863
Msp20I	TGGCCA	1 cut(s)	875
MspA1I	CMGCKG	2 cut(s)	23, 935
MspI	CCGG	4 cut(s)	203, 579, 828, 986
MspR9I	CCNGG	1 cut(s)	908
MvaI	CCWGG	1 cut(s)	908
MwoI	GCNNNNNNNGC	3 cut(s)	217, 516, 1019
NaeI	GCCGGC	1 cut(s)	580
NarI	GGCGCC	1 cut(s)	748
NcoI	CCATGG	1 cut(s)	815
NdeII	GATC	5 cut(s)	261, 409, 772, 806, 969
NgoMIV	GCCGGC	1 cut(s)	578
NlaIII	CATG	8 cut(s)	260, 477, 537, 586, 819, 847, 976, 985
NlaIV	GGNNCC	3 cut(s)	6, 749, 990
NmuCI	GTSAC	1 cut(s)	97
NsbI	TGCGCA	1 cut(s)	161
NspI	RCATGY	1 cut(s)	586
OliI	CACNNNNGTG	1 cut(s)	795
PagI	TCATGA	1 cut(s)	256
PcsI	WCGNNNNNNNCGW	1 cut(s)	962
PdiI	GCCGGC	1 cut(s)	580
PdmI	GAANNNNTTC	1 cut(s)	683
PfeI	GAWTC	1 cut(s)	997
PflMI	CCANNNNNTGG	2 cut(s)	744, 882
PkrI	GCNGC	7 cut(s)	80, 605, 768, 802, 934, 937, 1024
PleI	GAGTC	3 cut(s)	486, 625, 910
PluTI	GGCGCC	1 cut(s)	751
PpsI	GAGTC	3 cut(s)	486, 625, 910
Psp6I	CCWGG	1 cut(s)	906
PspFI	CCCAGC	1 cut(s)	928
PspGI	CCWGG	1 cut(s)	906
PspN4I	GGNNCC	3 cut(s)	6, 749, 990
PsrI	GAACNNNNNNTAC	2 cut(s)	771, 803
PstNI	CAGNNNCTG	1 cut(s)	935
PvuII	CAGCTG	2 cut(s)	23, 935
RsaI	GTAC	3 cut(s)	179, 359, 701
RsaNI	GTAC	3 cut(s)	178, 358, 700
RseI	CAYNNNNRTG	3 cut(s)	587, 795, 863
SaqAI	TTAA	2 cut(s)	168, 294
SatI	GCNGC	7 cut(s)	79, 604, 767, 801, 933, 936, 1023
Sau3AI	GATC	5 cut(s)	261, 409, 772, 806, 969
SchI	GAGTC	3 cut(s)	487, 625, 911
ScrFI	CCNGG	1 cut(s)	908
SduI	GDGCHC	3 cut(s)	222, 521, 554
SfaNI	GCATC	1 cut(s)	370
SfcI	CTRYAG	1 cut(s)	72
SfoI	GGCGCC	1 cut(s)	749
SmiMI	CAYNNNNRTG	3 cut(s)	587, 795, 863
Sse9I	AATT	2 cut(s)	346, 888
SsiI	CCGC	4 cut(s)	383, 563, 604, 938
SspDI	GGCGCC	1 cut(s)	747
SspMI	CTAG	1 cut(s)	600
StyD4I	CCNGG	1 cut(s)	906
StyI	CCWWGG	1 cut(s)	815
TaaI	ACNGT	2 cut(s)	224, 797
TaiI	ACGT	6 cut(s)	104, 210, 238, 701, 765, 786
TaqI	TCGA	4 cut(s)	264, 594, 956, 968
TasI	AATT	2 cut(s)	346, 888
TatI	WGTACW	1 cut(s)	357
TauI	GCSGC	1 cut(s)	606
TfiI	GAWTC	1 cut(s)	997
Tru1I	TTAA	2 cut(s)	168, 294
Tru9I	TTAA	2 cut(s)	168, 294
TscAI	CASTG	1 cut(s)	521
TseFI	GTSAC	1 cut(s)	97
TseI	GCWGC	6 cut(s)	78, 766, 800, 932, 935, 1022
Tsp45I	GTSAC	1 cut(s)	97
TspDTI	ATGAA	2 cut(s)	245, 522
TspGWI	ACGGA	1 cut(s)	326
TspRI	CASTG	1 cut(s)	521
Van91I	CCANNNNNTGG	2 cut(s)	744, 882
XapI	RAATTY	2 cut(s)	346, 888
XceI	RCATGY	1 cut(s)	586
XmiI	GTMKAC	1 cut(s)	824
XmnI	GAANNNNTTC	1 cut(s)	683
XspI	CTAG	1 cut(s)	600

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.