Rorug06G0236400

Belongs to the glycosyltransferase 8 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000006
OG0001700
Physical Location & Seq
Reverse (-)
37864029 .. 37865943
1915 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug06G0236400.1

Sequence Viewer

Length: 816 bp
ATGGCTAAGAATCTTACAACCAGTGGAAGCCATGTTCTCAATGTTGAAAATGACAAACCTTGCTCCAATACCAACCAAGAATCAAGCAGTAGCTTTTTCTGTGTACCCTTTATGCAGAAGGTGATTGCTGAGGTGTTGGGGACATACTTTTTGATATTTACGGGTTGTGGGTCTGTGGTGGTGAATTTGAACACAGAAAATACGGTGTCGTTTCCAGGGATTGCAATAGTTTGGGGACTAGTTGTGATGGTCATGATTTACTCTGTTGGTCACATCTCTGGTGCTCATTTCAATCCTGCTGTCACTATTGCTTTTGCTACCACCAAGAGATTTCCATGGAAACAGGTACCCCCTTATATTGCTGCTCAAGTCCTTGGATCAACATTTGCAAGTGGTACACTTAGACTACTGTTTAACAAGCATCAAGACCACTTTGTAGGAACAAGTCCTAGTGGAACTCCATTGCAGTCTTTCGTGATCGAGTTCATAATCACATTTTACCTCATGTTTGTTGTTTCTGGTGTTGCTACTGATAACAGAGCGATCGGAGAGCTTGCTGGGCTTGCGGTTGGCTCCACTGTTCTTCTGAATGTGTTGTTTGCAGGGCCAATTTCAGGAGCATCAATGAACCCAGCAAGAAGCTTAGGACCTGCAATAGTATCAAACCATTACAAAAACCTGTGGATTTATATTGTGTCACCAATTCTTGGAGCTGTATGTGGTGCCTTGGTCTACAATGTAATCAGATTTACAGATAAGCCACTGCGTGAGCTCACCAAGAGTGGCTCTTTCTTGAAAGGCGCATGCCGTACCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00052 map00052
Pfam Domains
Protein Families
Glyco_transf_8

Protein Analysis

271

Amino Acids

29.06

Weight (kDa)

9.15

Isoelectric Point (pI)

31.48

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
MIP PF00230 35 - 245 8.2e-66 Major intrinsic protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 658
Acc65I GGTACC 1 cut(s) 346
AccB1I GGYRCC 2 cut(s) 346, 722
AccB7I CCANNNNNTGG 1 cut(s) 707
AccI GTMKAC 1 cut(s) 732
AciI CCGC 1 cut(s) 566
AclWI GGATC 1 cut(s) 385
AcsI RAATTY 1 cut(s) 184
AdeI CACNNNGTG 1 cut(s) 767
AfaI GTAC 4 cut(s) 105, 348, 397, 811
AfiI CCNNNNNNNGG 2 cut(s) 614, 707
AgsI TTSAA 4 cut(s) 47, 190, 292, 796
AhlI ACTAGT 1 cut(s) 238
AjnI CCWGG 1 cut(s) 214
AloI GAACNNNNNNTCC 2 cut(s) 18, 50
AluBI AGCT 5 cut(s) 93, 553, 642, 713, 772
AluI AGCT 5 cut(s) 93, 553, 642, 713, 772
Alw21I GWGCWC 2 cut(s) 286, 774
AlwI GGATC 1 cut(s) 385
AoxI GGCC 1 cut(s) 605
ApeKI GCWGC 1 cut(s) 362
ApoI RAATTY 1 cut(s) 184
ArsI GACNNNNNNTTYG 2 cut(s) 133, 165
Asp718I GGTACC 1 cut(s) 346
AspLEI GCGC 1 cut(s) 803
AspS9I GGNCC 2 cut(s) 605, 647
AsuHPI GGTGA 4 cut(s) 133, 193, 690, 766
AvaII GGWCC 1 cut(s) 647
BanI GGYRCC 2 cut(s) 346, 722
BanII GRGCYC 1 cut(s) 774
Bbv12I GWGCWC 2 cut(s) 286, 774
BbvCI CCTCAGC 1 cut(s) 129
BbvI GCAGC 1 cut(s) 349
BccI CCATC 1 cut(s) 241
BceAI ACGGC 1 cut(s) 792
BciT130I CCWGG 1 cut(s) 216
BcuI ACTAGT 1 cut(s) 238
BfaI CTAG 2 cut(s) 239, 450
BfuAI ACCTGC 1 cut(s) 658
BisI GCNGC 1 cut(s) 363
BlsI GCNGC 1 cut(s) 364
Bme1390I CCNGG 1 cut(s) 216
Bme18I GGWCC 1 cut(s) 647
BmgT120I GGNCC 2 cut(s) 605, 647
BmiI GGNNCC 3 cut(s) 348, 574, 724
BmrFI CCNGG 1 cut(s) 216
BmsI GCATC 2 cut(s) 430, 629
Bpu10I CCTNAGC 2 cut(s) 129, 643
BpuEI CTTGAG 1 cut(s) 351
BsaJI CCNNGG 4 cut(s) 215, 335, 373, 726
Bsc4I CCNNNNNNNGG 2 cut(s) 614, 707
Bse1I ACTGG 1 cut(s) 21
Bse3DI GCAATG 1 cut(s) 461
BseBI CCWGG 1 cut(s) 216
BseDI CCNNGG 4 cut(s) 215, 335, 373, 726
BseLI CCNNNNNNNGG 2 cut(s) 614, 707
BseMI GCAATG 1 cut(s) 461
BseMII CTCAG 1 cut(s) 120
BseNI ACTGG 1 cut(s) 21
BseXI GCAGC 1 cut(s) 349
BseYI CCCAGC 2 cut(s) 557, 631
Bsh1285I CGRYCG 1 cut(s) 546
BshFI GGCC 1 cut(s) 607
BshNI GGYRCC 2 cut(s) 346, 722
BsiEI CGRYCG 1 cut(s) 546
BsiHKAI GWGCWC 2 cut(s) 286, 774
BslFI GGGAC 2 cut(s) 154, 249
BslI CCNNNNNNNGG 2 cut(s) 614, 707
BsmFI GGGAC 2 cut(s) 154, 249
BsnI GGCC 1 cut(s) 607
Bsp1286I GDGCHC 2 cut(s) 286, 774
Bsp143I GATC 3 cut(s) 377, 477, 543
Bsp19I CCATGG 1 cut(s) 335
BspACI CCGC 1 cut(s) 566
BspANI GGCC 1 cut(s) 607
BspCNI CTCAG 1 cut(s) 121
BspHI TCATGA 1 cut(s) 252
BspLI GGNNCC 3 cut(s) 348, 574, 724
BspMI ACCTGC 1 cut(s) 658
BspPI GGATC 1 cut(s) 385
BspT107I GGYRCC 2 cut(s) 346, 722
BsrDI GCAATG 1 cut(s) 461
BsrI ACTGG 1 cut(s) 21
BssECI CCNNGG 4 cut(s) 215, 335, 373, 726
BssMI GATC 3 cut(s) 377, 477, 543
BssT1I CCWWGG 3 cut(s) 335, 373, 726
Bst2UI CCWGG 1 cut(s) 216
Bst4CI ACNGT 3 cut(s) 205, 411, 580
BstC8I GCNNGC 3 cut(s) 555, 564, 805
BstDEI CTNAG 4 cut(s) 6, 129, 401, 643
BstDSI CCRYGG 1 cut(s) 335
BstHHI GCGC 1 cut(s) 803
BstKTI GATC 3 cut(s) 380, 480, 546
BstMBI GATC 3 cut(s) 377, 477, 543
BstMCI CGRYCG 1 cut(s) 546
BstMWI GCNNNNNNNGC 2 cut(s) 559, 563
BstNI CCWGG 1 cut(s) 216
BstNSI RCATGY 1 cut(s) 807
BstSCI CCNGG 1 cut(s) 214
BstV1I GCAGC 1 cut(s) 349
BsuRI GGCC 1 cut(s) 607
BtgI CCRYGG 1 cut(s) 335
BtsI GCAGTG 1 cut(s) 761
BtsIMutI CAGTG 3 cut(s) 28, 576, 761
BveI ACCTGC 1 cut(s) 658
Cac8I GCNNGC 3 cut(s) 555, 564, 805
CciI TCATGA 1 cut(s) 252
CfoI GCGC 1 cut(s) 803
Cfr13I GGNCC 2 cut(s) 605, 647
Csp6I GTAC 4 cut(s) 104, 347, 396, 810
CviAII CATG 5 cut(s) 32, 253, 336, 505, 804
CviQI GTAC 4 cut(s) 104, 347, 396, 810
DdeI CTNAG 4 cut(s) 6, 129, 401, 643
DpnI GATC 3 cut(s) 379, 479, 545
DpnII GATC 3 cut(s) 377, 477, 543
DraIII CACNNNGTG 1 cut(s) 767
Ecl136II GAGCTC 1 cut(s) 772
Eco130I CCWWGG 3 cut(s) 335, 373, 726
Eco24I GRGCYC 1 cut(s) 774
Eco47I GGWCC 1 cut(s) 647
Eco53kI GAGCTC 1 cut(s) 772
EcoICRI GAGCTC 1 cut(s) 772
EcoO109I RGGNCCY 1 cut(s) 647
EcoRII CCWGG 1 cut(s) 214
EcoT14I CCWWGG 3 cut(s) 335, 373, 726
EcoT38I GRGCYC 1 cut(s) 774
ErhI CCWWGG 3 cut(s) 335, 373, 726
FaeI CATG 5 cut(s) 35, 256, 339, 508, 807
FaqI GGGAC 2 cut(s) 154, 249
FatI CATG 5 cut(s) 31, 252, 335, 504, 803
FblI GTMKAC 1 cut(s) 732
Fnu4HI GCNGC 1 cut(s) 363
FriOI GRGCYC 1 cut(s) 774
Fsp4HI GCNGC 1 cut(s) 363
FspBI CTAG 2 cut(s) 239, 450
GlaI GCGC 1 cut(s) 802
GluI GCNGC 1 cut(s) 363
GsaI CCCAGC 2 cut(s) 561, 635
HaeIII GGCC 1 cut(s) 607
HhaI GCGC 1 cut(s) 803
Hin1II CATG 5 cut(s) 35, 256, 339, 508, 807
Hin6I GCGC 1 cut(s) 801
HinP1I GCGC 1 cut(s) 801
HindIII AAGCTT 1 cut(s) 640
HinfI GANTC 2 cut(s) 10, 80
HphI GGTGA 4 cut(s) 133, 193, 690, 766
Hpy166II GTNNAC 3 cut(s) 104, 398, 733
Hpy188I TCNGA 3 cut(s) 548, 588, 746
Hpy188III TCNNGA 5 cut(s) 253, 425, 475, 615, 793
Hpy8I GTNNAC 3 cut(s) 104, 398, 733
HpyAV CCTTC 1 cut(s) 112
HpyCH4III ACNGT 3 cut(s) 205, 411, 580
HpyCH4V TGCA 6 cut(s) 115, 224, 389, 466, 602, 653
HpyF10VI GCNNNNNNNGC 2 cut(s) 559, 563
HpyF3I CTNAG 4 cut(s) 6, 129, 401, 643
Hsp92II CATG 5 cut(s) 35, 256, 339, 508, 807
HspAI GCGC 1 cut(s) 801
KpnI GGTACC 1 cut(s) 350
Kzo9I GATC 3 cut(s) 377, 477, 543
LmnI GCTCC 4 cut(s) 68, 578, 617, 710
Lsp1109I GCAGC 1 cut(s) 349
LweI GCATC 2 cut(s) 430, 629
MaeI CTAG 2 cut(s) 239, 450
MaeIII GTNAC 3 cut(s) 269, 301, 696
MalI GATC 3 cut(s) 379, 479, 545
MboI GATC 3 cut(s) 377, 477, 543
MboII GAAGA 1 cut(s) 575
MhlI GDGCHC 2 cut(s) 286, 774
MluCI AATT 3 cut(s) 184, 609, 702
MnlI CCTC 2 cut(s) 124, 512
MseI TTAA 1 cut(s) 414
MspR9I CCNGG 1 cut(s) 216
MvaI CCWGG 1 cut(s) 216
MwoI GCNNNNNNNGC 2 cut(s) 559, 563
NcoI CCATGG 1 cut(s) 335
NdeII GATC 3 cut(s) 377, 477, 543
NlaIII CATG 5 cut(s) 35, 256, 339, 508, 807
NlaIV GGNNCC 3 cut(s) 348, 574, 724
NmuCI GTSAC 3 cut(s) 269, 301, 696
NspI RCATGY 1 cut(s) 807
PaeI GCATGC 1 cut(s) 807
PagI TCATGA 1 cut(s) 252
PfeI GAWTC 2 cut(s) 10, 80
PflMI CCANNNNNTGG 1 cut(s) 707
PkrI GCNGC 1 cut(s) 364
Ple19I CGATCG 1 cut(s) 546
PpuMI RGGWCCY 1 cut(s) 647
Psp124BI GAGCTC 1 cut(s) 774
Psp5II RGGWCCY 1 cut(s) 647
Psp6I CCWGG 1 cut(s) 214
PspFI CCCAGC 2 cut(s) 557, 631
PspGI CCWGG 1 cut(s) 214
PspN4I GGNNCC 3 cut(s) 348, 574, 724
PspPI GGNCC 2 cut(s) 605, 647
PspPPI RGGWCCY 1 cut(s) 647
PvuI CGATCG 1 cut(s) 546
RsaI GTAC 4 cut(s) 105, 348, 397, 811
RsaNI GTAC 4 cut(s) 104, 347, 396, 810
SacI GAGCTC 1 cut(s) 774
SaqAI TTAA 1 cut(s) 414
SatI GCNGC 1 cut(s) 363
Sau3AI GATC 3 cut(s) 377, 477, 543
Sau96I GGNCC 2 cut(s) 605, 647
ScrFI CCNGG 1 cut(s) 216
SduI GDGCHC 2 cut(s) 286, 774
SfaNI GCATC 2 cut(s) 430, 629
SinI GGWCC 1 cut(s) 647
SmlI CTYRAG 1 cut(s) 366
SmoI CTYRAG 1 cut(s) 366
SpeI ACTAGT 1 cut(s) 238
SphI GCATGC 1 cut(s) 807
Sse9I AATT 3 cut(s) 184, 609, 702
SsiI CCGC 1 cut(s) 566
SspMI CTAG 2 cut(s) 239, 450
SstI GAGCTC 1 cut(s) 774
StyD4I CCNGG 1 cut(s) 214
StyI CCWWGG 3 cut(s) 335, 373, 726
TaaI ACNGT 3 cut(s) 205, 411, 580
TaqI TCGA 1 cut(s) 480
TasI AATT 3 cut(s) 184, 609, 702
TfiI GAWTC 2 cut(s) 10, 80
Tru1I TTAA 1 cut(s) 414
Tru9I TTAA 1 cut(s) 414
TscAI CASTG 3 cut(s) 28, 583, 768
TseFI GTSAC 3 cut(s) 269, 301, 696
TseI GCWGC 1 cut(s) 362
Tsp45I GTSAC 3 cut(s) 269, 301, 696
TspDTI ATGAA 2 cut(s) 475, 641
TspRI CASTG 3 cut(s) 28, 583, 768
Van91I CCANNNNNTGG 1 cut(s) 707
VpaK11BI GGWCC 1 cut(s) 647
XapI RAATTY 1 cut(s) 184
XceI RCATGY 1 cut(s) 807
XmiI GTMKAC 1 cut(s) 732
XspI CTAG 2 cut(s) 239, 450
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.