Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0001700

Physical Location & Seq

Genomic Coordinates Reverse (-)

22278975 .. 22280593

Gene Structure 1619 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT1G60470.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1005 bp

ATGGCCCCTGAGATTTCCGTAAACCCGATGTATTTATCCGAAAAGGCGCATCAAGCACCTCCAAGGAGAGCTTATGTGACGTTTTTGGCAGGAAATGGAGACTACGTGAAGGGAGTGGTGGGACTAGCAAAGGGTTTGCGTAAGGTCAAAAGTGCGTATCCTCTTGTTGTTGCTATGTTACCTGATGTGCCTGAGGAACATAGAGAGATCTTGAGGTCTCAAGGCTGTGTCGTGCGTGAGATCGAACCTGTTTATCCTCCAGACAACCAAGTTGAGTTTGCCATGGCTTATTACGTTCTCAACTACTCAAAACTTCGTATTTGGAACTTTGAAGAGTACAGCAAGATGATATACCTTGACGCAGATATTCAAGTCTTTGACAATATCGATCACCTCTTTGATTTGTCTGATGCATATTTCTATGCCGTGATGGACTGTTTCTGTGAGAAAACATGGAGCCACTCGCTGCAGTATTCAATTGGGTATTGTCAACAGTGCCCGGAGAAGGTCACGTGGCCAGAAGATATGGAATCTCCACCTCCTCCTCTGTATTTCAACGCCGGTATGTTTGTGTTTGAGCCTAGTCCTTTGACTTATGAGAGTCTCCTTCAGACCCTGGAGATCACACCACCTTCACCGTTTGCAGAACAAGATTTTCTCAATATGTTCTTTGAGAAAGTGTACAAACCGATCCCTTTGGTATACAATCTGGTTTTGGCTATGCTTTGGCGTCACCCGGAGAACGTGGAGCTGGAGAAAGTCAAAGTTGTTCACTACTGTGCAGCTGGATCCAAGCCATGGAGATACACAGGAGAAGAAGCTAACATGGACAGAGAAGACATCAAGATGTTAGTTGATAAATGGTGGGATGTCTATAATGATGAATCTCTCGATTTCAAATCGAAAATCCCTGCAGATGCGGAAGAAACCGTTACAAAATCAAGCATCCTAGCTTCCGTTCTTGAACCAGAAATGACCTACTTTCCTGCTCCTTCTGCTGCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000271 GO:0003674 GO:0003824 GO:0005488 GO:0005536 GO:0005975 GO:0005976 GO:0005977 GO:0005978 GO:0005996 GO:0006012 GO:0006073 GO:0006091 GO:0006112 GO:0006950 GO:0006979 GO:0008150 GO:0008152 GO:0008194 GO:0008378 GO:0008466 GO:0009058 GO:0009059 GO:0009250 GO:0009987 GO:0015980 GO:0016051 GO:0016740 GO:0016757 GO:0016758 GO:0019318 GO:0030246 GO:0033692 GO:0034637 GO:0034645 GO:0035250 GO:0035251 GO:0036094 GO:0043170 GO:0044042 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044262 GO:0044264 GO:0044281 GO:0046527 GO:0047216 GO:0048029 GO:0050896 GO:0055114 GO:0071704 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00052 map00052

Pfam Domains

Protein Families

Glyco_transf_8

Protein Analysis

334

Amino Acids

38.51

Weight (kDa)

4.7

Isoelectric Point (pI)

49.14

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Glyco_transf_8	PF01501	27 - 270	2.1e-48	Glycosyl transferase family 8

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001700)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G60450 AT1G60470
fragaria_vesca	FvH4_4g20790 FvH4_4g34160
malus_domestica	MD13G1093700.v1.1 MD13G1147700.v1.1 MD16G1095000.v1.1
prunus_persica	Prupe.1G111300_v2.0.a1 Prupe.1G251600_v2.0.a1 Prupe.8G258200_v2.0.a1
pyrus_communis	pycom13g08160 pycom13g12730 pycom16g08080 pycom16g08090 pycom16g12600
rosa_chinensis	RchiOBHm_Chr4g0426261 RchiOBHm_Chr4g0443671 RchiOBHm_Chr6g0293551
rosa_laevigata	RLG00000005903 RLG00000007308 RLG00000011942
rosa_multiflora	Rmu_co8279911.1_g000001 Rmu_sc0000730.1_g000037 Rmu_sc0001426.1_g000017 Rmu_sc0032866.1_g000001 Rmu_sc0036604.1_g000001
rosa_roxburghii	Rroxscaffold_5G00368270 Rroxscaffold_5G00384220
rosa_rugosa	Rorug04G0209900 Rorug06G0236400
rosa_samantha	Rh4AG266800 Rh4AG406100 Rh4BG272700 Rh4BG417100 Rh4CG286100 Rh4CG286400 Rh4CG431600 Rh4DG269100 Rh4DG269300 Rh4DG412700 Rh6AG349100 Rh6BG356500 Rh6CG363200 Rh6DG350100
rosa_wichuraiana	Rw4G023060 Rw4G023080 Rw4G034870 Rw6G030370

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	798
AccI	GTMKAC	1 cut(s)	702
AciI	CCGC	1 cut(s)	920
AclWI	GGATC	3 cut(s)	685, 783, 796
AcoI	YGGCCR	1 cut(s)	515
AcuI	CTGAAG	1 cut(s)	593
AcvI	CACGTG	1 cut(s)	513
AcyI	GRCGYC	1 cut(s)	730
AfaI	GTAC	2 cut(s)	338, 683
AfiI	CCNNNNNNNGG	2 cut(s)	505, 798
AgsI	TTSAA	6 cut(s)	332, 371, 477, 556, 898, 965
AjnI	CCWGG	1 cut(s)	615
AleI	CACNNNNGTG	1 cut(s)	777
AluBI	AGCT	5 cut(s)	71, 751, 785, 821, 953
AluI	AGCT	5 cut(s)	71, 751, 785, 821, 953
Alw26I	GTCTC	3 cut(s)	93, 222, 608
AlwI	GGATC	3 cut(s)	685, 783, 796
AlwNI	CAGNNNCTG	1 cut(s)	616
AoxI	GGCC	2 cut(s)	3, 515
ApeKI	GCWGC	3 cut(s)	466, 782, 998
AspLEI	GCGC	1 cut(s)	49
AspS9I	GGNCC	1 cut(s)	4
AsuC2I	CCSGG	2 cut(s)	500, 737
AsuHPI	GGTGA	3 cut(s)	383, 627, 725
AxyI	CCTNAGG	1 cut(s)	192
BaeGI	GKGCMC	1 cut(s)	500
BalI	TGGCCA	1 cut(s)	517
BamHI	GGATCC	1 cut(s)	788
BbrPI	CACGTG	1 cut(s)	513
BbsI	GAAGAC	1 cut(s)	843
BbvI	GCAGC	3 cut(s)	453, 794, 985
BccI	CCATC	1 cut(s)	424
BceAI	ACGGC	1 cut(s)	410
BciT130I	CCWGG	1 cut(s)	617
BciVI	GTATCC	1 cut(s)	168
BcnI	CCSGG	2 cut(s)	500, 737
BcoDI	GTCTC	3 cut(s)	93, 222, 608
BfaI	CTAG	3 cut(s)	125, 582, 950
BfmI	CTRYAG	2 cut(s)	467, 912
BfuI	GTATCC	1 cut(s)	168
BglII	AGATCT	1 cut(s)	207
BisI	GCNGC	3 cut(s)	467, 783, 999
BlsI	GCNGC	3 cut(s)	468, 784, 1000
Bme1390I	CCNGG	3 cut(s)	500, 617, 737
BmgT120I	GGNCC	1 cut(s)	4
BmiI	GGNNCC	3 cut(s)	6, 458, 790
BmrFI	CCNGG	3 cut(s)	500, 617, 737
BmsI	GCATC	4 cut(s)	58, 400, 907, 954
BpiI	GAAGAC	1 cut(s)	843
BpmI	CTGGAG	3 cut(s)	243, 638, 773
BpuEI	CTTGAG	2 cut(s)	204, 232
BpuMI	CCSGG	2 cut(s)	500, 737
Bsa29I	ATCGAT	1 cut(s)	387
BsaAI	YACGTR	2 cut(s)	106, 513
BsaHI	GRCGYC	1 cut(s)	730
BsaI	GGTCTC	1 cut(s)	222
BsaJI	CCNNGG	4 cut(s)	62, 282, 615, 797
BsaXI	ACNNNNNCTCC	2 cut(s)	90, 120
Bsc4I	CCNNNNNNNGG	2 cut(s)	505, 798
Bse118I	RCCGGY	1 cut(s)	560
Bse21I	CCTNAGG	1 cut(s)	192
BseBI	CCWGG	1 cut(s)	617
BseCI	ATCGAT	1 cut(s)	387
BseDI	CCNNGG	4 cut(s)	62, 282, 615, 797
BseGI	GGATG	2 cut(s)	874, 945
BseLI	CCNNNNNNNGG	2 cut(s)	505, 798
BseMII	CTCAG	1 cut(s)	183
BseRI	GAGGAG	2 cut(s)	531, 534
BseSI	GKGCMC	1 cut(s)	500
BseXI	GCAGC	3 cut(s)	453, 794, 985
BsgI	GTGCAG	1 cut(s)	801
BshFI	GGCC	2 cut(s)	5, 517
BshVI	ATCGAT	1 cut(s)	387
BsiSI	CCGG	3 cut(s)	500, 561, 737
BslFI	GGGAC	1 cut(s)	135
BslI	CCNNNNNNNGG	2 cut(s)	505, 798
BsmAI	GTCTC	3 cut(s)	93, 222, 608
BsmFI	GGGAC	1 cut(s)	135
BsnI	GGCC	2 cut(s)	5, 517
Bso31I	GGTCTC	1 cut(s)	222
Bsp1286I	GDGCHC	1 cut(s)	500
Bsp1407I	TGTACA	1 cut(s)	681
Bsp143I	GATC	6 cut(s)	207, 240, 388, 621, 690, 788
Bsp19I	CCATGG	2 cut(s)	282, 797
BspACI	CCGC	1 cut(s)	920
BspANI	GGCC	2 cut(s)	5, 517
BspCNI	CTCAG	1 cut(s)	184
BspDI	ATCGAT	1 cut(s)	387
BspLI	GGNNCC	3 cut(s)	6, 458, 790
BspMAI	CTGCAG	2 cut(s)	471, 916
BspPI	GGATC	3 cut(s)	685, 783, 796
BspTNI	GGTCTC	1 cut(s)	222
BsrFI	RCCGGY	1 cut(s)	560
BsrGI	TGTACA	1 cut(s)	681
BssAI	RCCGGY	1 cut(s)	560
BssECI	CCNNGG	4 cut(s)	62, 282, 615, 797
BssMI	GATC	6 cut(s)	207, 240, 388, 621, 690, 788
BssNAI	GTATAC	1 cut(s)	703
BssNI	GRCGYC	1 cut(s)	730
BssT1I	CCWWGG	3 cut(s)	62, 282, 797
Bst1107I	GTATAC	1 cut(s)	703
Bst2UI	CCWGG	1 cut(s)	617
Bst4CI	ACNGT	5 cut(s)	437, 495, 639, 779, 931
Bst6I	CTCTTC	1 cut(s)	327
BstACI	GRCGYC	1 cut(s)	730
BstAUI	TGTACA	1 cut(s)	681
BstBAI	YACGTR	2 cut(s)	106, 513
BstDEI	CTNAG	2 cut(s)	9, 192
BstDSI	CCRYGG	2 cut(s)	282, 797
BstF5I	GGATG	2 cut(s)	874, 945
BstHHI	GCGC	1 cut(s)	49
BstKTI	GATC	6 cut(s)	210, 243, 391, 624, 693, 791
BstMAI	GTCTC	3 cut(s)	93, 222, 608
BstMBI	GATC	6 cut(s)	207, 240, 388, 621, 690, 788
BstMWI	GCNNNNNNNGC	2 cut(s)	53, 995
BstNI	CCWGG	1 cut(s)	617
BstSCI	CCNGG	3 cut(s)	498, 615, 735
BstSFI	CTRYAG	2 cut(s)	467, 912
BstSLI	GKGCMC	1 cut(s)	500
BstV1I	GCAGC	3 cut(s)	453, 794, 985
BstV2I	GAAGAC	1 cut(s)	843
BstX2I	RGATCY	2 cut(s)	207, 788
BstYI	RGATCY	2 cut(s)	207, 788
BstZ17I	GTATAC	1 cut(s)	703
Bsu15I	ATCGAT	1 cut(s)	387
Bsu36I	CCTNAGG	1 cut(s)	192
BsuI	GTATCC	1 cut(s)	168
BsuRI	GGCC	2 cut(s)	5, 517
BsuTUI	ATCGAT	1 cut(s)	387
BtgI	CCRYGG	2 cut(s)	282, 797
BtsCI	GGATG	2 cut(s)	874, 945
BtsIMutI	CAGTG	1 cut(s)	500
CaiI	CAGNNNCTG	1 cut(s)	616
CfoI	GCGC	1 cut(s)	49
Cfr10I	RCCGGY	1 cut(s)	560
Cfr13I	GGNCC	1 cut(s)	4
ClaI	ATCGAT	1 cut(s)	387
CseI	GACGC	2 cut(s)	368, 719
Csp6I	GTAC	2 cut(s)	337, 682
CviAII	CATG	4 cut(s)	283, 453, 798, 826
CviQI	GTAC	2 cut(s)	337, 682
DdeI	CTNAG	2 cut(s)	9, 192
DpnI	GATC	6 cut(s)	209, 242, 390, 623, 692, 790
DpnII	GATC	6 cut(s)	207, 240, 388, 621, 690, 788
EaeI	YGGCCR	1 cut(s)	515
Eam1104I	CTCTTC	1 cut(s)	327
EarI	CTCTTC	1 cut(s)	327
Eco130I	CCWWGG	3 cut(s)	62, 282, 797
Eco31I	GGTCTC	1 cut(s)	222
Eco57I	CTGAAG	1 cut(s)	593
Eco72I	CACGTG	1 cut(s)	513
Eco81I	CCTNAGG	1 cut(s)	192
EcoRII	CCWGG	1 cut(s)	615
EcoT14I	CCWWGG	3 cut(s)	62, 282, 797
EcoT22I	ATGCAT	1 cut(s)	415
ErhI	CCWWGG	3 cut(s)	62, 282, 797
FaeI	CATG	4 cut(s)	286, 456, 801, 829
FalI	AAGNNNNNCTT	2 cut(s)	55, 87
FaqI	GGGAC	1 cut(s)	135
FatI	CATG	4 cut(s)	282, 452, 797, 825
FblI	GTMKAC	1 cut(s)	702
Fnu4HI	GCNGC	3 cut(s)	467, 783, 999
FokI	GGATG	2 cut(s)	881, 932
Fsp4HI	GCNGC	3 cut(s)	467, 783, 999
FspBI	CTAG	3 cut(s)	125, 582, 950
GlaI	GCGC	1 cut(s)	48
GluI	GCNGC	3 cut(s)	467, 783, 999
GsuI	CTGGAG	3 cut(s)	243, 638, 773
HaeIII	GGCC	2 cut(s)	5, 517
HapII	CCGG	3 cut(s)	500, 561, 737
HgaI	GACGC	2 cut(s)	368, 719
HhaI	GCGC	1 cut(s)	49
Hin1I	GRCGYC	1 cut(s)	730
Hin1II	CATG	4 cut(s)	286, 456, 801, 829
Hin6I	GCGC	1 cut(s)	47
HinP1I	GCGC	1 cut(s)	47
HincII	GTYRAC	1 cut(s)	491
HindII	GTYRAC	1 cut(s)	491
HinfI	GANTC	3 cut(s)	530, 601, 884
HpaII	CCGG	3 cut(s)	500, 561, 737
HphI	GGTGA	3 cut(s)	383, 627, 725
Hpy166II	GTNNAC	5 cut(s)	22, 491, 682, 703, 772
Hpy188I	TCNGA	3 cut(s)	40, 409, 612
Hpy188III	TCNNGA	5 cut(s)	211, 260, 844, 890, 962
Hpy8I	GTNNAC	5 cut(s)	22, 491, 682, 703, 772
HpyAV	CCTTC	5 cut(s)	103, 499, 617, 642, 1002
HpyCH4III	ACNGT	5 cut(s)	437, 495, 639, 779, 931
HpyCH4IV	ACGT	5 cut(s)	80, 105, 294, 512, 744
HpyCH4V	TGCA	5 cut(s)	413, 469, 644, 782, 914
HpyF10VI	GCNNNNNNNGC	2 cut(s)	53, 995
HpyF3I	CTNAG	2 cut(s)	9, 192
HpySE526I	ACGT	5 cut(s)	80, 105, 294, 512, 744
Hsp92I	GRCGYC	1 cut(s)	730
Hsp92II	CATG	4 cut(s)	286, 456, 801, 829
HspAI	GCGC	1 cut(s)	47
Kzo9I	GATC	6 cut(s)	207, 240, 388, 621, 690, 788
LmnI	GCTCC	3 cut(s)	456, 748, 994
Lsp1109I	GCAGC	3 cut(s)	453, 794, 985
LweI	GCATC	4 cut(s)	58, 400, 907, 954
MaeI	CTAG	3 cut(s)	125, 582, 950
MaeII	ACGT	5 cut(s)	80, 105, 294, 512, 744
MaeIII	GTNAC	5 cut(s)	76, 177, 508, 731, 931
MalI	GATC	6 cut(s)	209, 242, 390, 623, 692, 790
MboI	GATC	6 cut(s)	207, 240, 388, 621, 690, 788
MboII	GAAGA	5 cut(s)	344, 533, 827, 848, 935
MfeI	CAATTG	1 cut(s)	477
MflI	RGATCY	2 cut(s)	207, 788
MhlI	GDGCHC	1 cut(s)	500
MlsI	TGGCCA	1 cut(s)	517
MluCI	AATT	1 cut(s)	477
MluNI	TGGCCA	1 cut(s)	517
MlyI	GAGTC	1 cut(s)	610
MnlI	CCTC	9 cut(s)	69, 171, 187, 207, 267, 404, 549, 552, 555
Mox20I	TGGCCA	1 cut(s)	517
Mph1103I	ATGCAT	1 cut(s)	415
MscI	TGGCCA	1 cut(s)	517
MslI	CAYNNNNRTG	2 cut(s)	777, 845
Msp20I	TGGCCA	1 cut(s)	517
MspA1I	CMGCKG	1 cut(s)	785
MspI	CCGG	3 cut(s)	500, 561, 737
MspR9I	CCNGG	3 cut(s)	500, 617, 737
MunI	CAATTG	1 cut(s)	477
MvaI	CCWGG	1 cut(s)	617
MwoI	GCNNNNNNNGC	2 cut(s)	53, 995
NciI	CCSGG	2 cut(s)	500, 737
NcoI	CCATGG	2 cut(s)	282, 797
NdeII	GATC	6 cut(s)	207, 240, 388, 621, 690, 788
NlaIII	CATG	4 cut(s)	286, 456, 801, 829
NlaIV	GGNNCC	3 cut(s)	6, 458, 790
NmuCI	GTSAC	3 cut(s)	76, 508, 731
NsiI	ATGCAT	1 cut(s)	415
OliI	CACNNNNGTG	1 cut(s)	777
PfeI	GAWTC	2 cut(s)	530, 884
PflMI	CCANNNNNTGG	1 cut(s)	798
PkrI	GCNGC	3 cut(s)	468, 784, 1000
PleI	GAGTC	1 cut(s)	609
PmaCI	CACGTG	1 cut(s)	513
PmlI	CACGTG	1 cut(s)	513
PpsI	GAGTC	1 cut(s)	609
Ppu21I	YACGTR	2 cut(s)	106, 513
Psp6I	CCWGG	1 cut(s)	615
PspCI	CACGTG	1 cut(s)	513
PspGI	CCWGG	1 cut(s)	615
PspN4I	GGNNCC	3 cut(s)	6, 458, 790
PspPI	GGNCC	1 cut(s)	4
PstI	CTGCAG	2 cut(s)	471, 916
PstNI	CAGNNNCTG	1 cut(s)	616
PsuI	RGATCY	2 cut(s)	207, 788
PvuII	CAGCTG	1 cut(s)	785
RsaI	GTAC	2 cut(s)	338, 683
RsaNI	GTAC	2 cut(s)	337, 682
RseI	CAYNNNNRTG	2 cut(s)	777, 845
SatI	GCNGC	3 cut(s)	467, 783, 999
Sau3AI	GATC	6 cut(s)	207, 240, 388, 621, 690, 788
Sau96I	GGNCC	1 cut(s)	4
SchI	GAGTC	1 cut(s)	610
ScrFI	CCNGG	3 cut(s)	500, 617, 737
SduI	GDGCHC	1 cut(s)	500
SfaNI	GCATC	4 cut(s)	58, 400, 907, 954
SfcI	CTRYAG	2 cut(s)	467, 912
SmiMI	CAYNNNNRTG	2 cut(s)	777, 845
SmlI	CTYRAG	2 cut(s)	211, 219
SmoI	CTYRAG	2 cut(s)	211, 219
Sse9I	AATT	1 cut(s)	477
SsiI	CCGC	1 cut(s)	920
SspMI	CTAG	3 cut(s)	125, 582, 950
StyD4I	CCNGG	3 cut(s)	498, 615, 735
StyI	CCWWGG	3 cut(s)	62, 282, 797
TaaI	ACNGT	5 cut(s)	437, 495, 639, 779, 931
TaiI	ACGT	5 cut(s)	83, 108, 297, 515, 747
TaqI	TCGA	4 cut(s)	243, 387, 891, 902
TasI	AATT	1 cut(s)	477
TatI	WGTACW	2 cut(s)	336, 681
TfiI	GAWTC	2 cut(s)	530, 884
TscAI	CASTG	1 cut(s)	500
TseFI	GTSAC	3 cut(s)	76, 508, 731
TseI	GCWGC	3 cut(s)	466, 782, 998
Tsp45I	GTSAC	3 cut(s)	76, 508, 731
TspDTI	ATGAA	1 cut(s)	897
TspGWI	ACGGA	2 cut(s)	7, 946
TspRI	CASTG	1 cut(s)	500
Van91I	CCANNNNNTGG	1 cut(s)	798
XmiI	GTMKAC	1 cut(s)	702
XspI	CTAG	3 cut(s)	125, 582, 950
Zsp2I	ATGCAT	1 cut(s)	415

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.