Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr16

Orthogroup ID

OG0001700

Physical Location & Seq

Genomic Coordinates Reverse (-)

6573774 .. 6575140

Gene Structure 1367 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD16G1095000.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 906 bp

ATGGCACCCCCAGAAGTTCCAGCTGATGTGTTCCAGGCCACAAGGAAAGTCTCAACGCTCACTACTACTACTACTACTACAGGCTGCTCCAAGAGGGCATTTGTGACTTTTTTAGCTGGAAATGGTGATTATTTCAAAGGGGTTGTGGGTTTGGCTAAGGGCTTGCGCAAAGTTAAGAGTGAGTACCCTCTTGTGGTTGCGATATTGCCGGACGTGCCGGAGGAGCACCGTGAGATTTTACGTTCTCAGGGTTGTATTGTTCATCAGATCGAACCTATTTATCCTCCTGAGAATCAGATTAAGTTTGCAATGGCCTACTATGTCATCAACTACTCCAAGCTCCGTATTTGGAATTTTGAGGAGTACAGCAAAATGATATATTTGGATGCGGATATCCAAGTGTTTGAGAACATTGATCATCTGTTTGATACGCCTGATGGCTACTTCTATGCTGTGATGGACTGTTTCTGTGAGAAAACATGGAGTCACTCACCACAATACACAATCGGGTATTGCCAGCAGTGCCCTGACAAGGTTTCATGGCCTGCTGACATGGGCTCTCCTCCTCCGCTCTACTTCAACGCCGGCATGTTCGTGTTCGAGCCTAGCCGCTTGACATACGACGGCCTTCTTCAGACTCTCAAAGTCGTCCCACCCACCCCTTTCGCAGAACAAGATTTCTTGAACATGTTCTTCCAAAAGAAGTACAAACCAATCCCAAACATATACAACTTAGTTCTAGCCAATCTATGGCGCCACCCAGAGAACGTGCAGCTTGATCAAGTAAACGTAGTTCACTACTGTGCTGCTGGATCAAAACCATGGAGGTATACCGGCAAGGAAGCTAACATGGACAGAGAGGACATCAACTCACTACGAAGCTGGAGAAGGCGACCGGTGGACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000271 GO:0003674 GO:0003824 GO:0005488 GO:0005536 GO:0005975 GO:0005976 GO:0005977 GO:0005978 GO:0005996 GO:0006012 GO:0006073 GO:0006091 GO:0006112 GO:0006950 GO:0006979 GO:0008150 GO:0008152 GO:0008194 GO:0008378 GO:0008466 GO:0009058 GO:0009059 GO:0009250 GO:0009987 GO:0015980 GO:0016051 GO:0016740 GO:0016757 GO:0016758 GO:0019318 GO:0030246 GO:0033692 GO:0034637 GO:0034645 GO:0035250 GO:0035251 GO:0036094 GO:0043170 GO:0044042 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044262 GO:0044264 GO:0044281 GO:0046527 GO:0047216 GO:0048029 GO:0050896 GO:0055114 GO:0071704 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00052 map00052

Pfam Domains

Protein Families

Glyco_transf_8

Protein Analysis

302

Amino Acids

34.72

Weight (kDa)

6.32

Isoelectric Point (pI)

48.39

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Glyco_transf_8	PF01501	36 - 278	1.6e-46	Glycosyl transferase family 8

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001700)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G60450 AT1G60470
fragaria_vesca	FvH4_4g20790 FvH4_4g34160
malus_domestica	MD13G1093700.v1.1 MD13G1147700.v1.1 MD16G1095000.v1.1
prunus_persica	Prupe.1G111300_v2.0.a1 Prupe.1G251600_v2.0.a1 Prupe.8G258200_v2.0.a1
pyrus_communis	pycom13g08160 pycom13g12730 pycom16g08080 pycom16g08090 pycom16g12600
rosa_chinensis	RchiOBHm_Chr4g0426261 RchiOBHm_Chr4g0443671 RchiOBHm_Chr6g0293551
rosa_laevigata	RLG00000005903 RLG00000007308 RLG00000011942
rosa_multiflora	Rmu_co8279911.1_g000001 Rmu_sc0000730.1_g000037 Rmu_sc0001426.1_g000017 Rmu_sc0032866.1_g000001 Rmu_sc0036604.1_g000001
rosa_roxburghii	Rroxscaffold_5G00368270 Rroxscaffold_5G00384220
rosa_rugosa	Rorug04G0209900 Rorug06G0236400
rosa_samantha	Rh4AG266800 Rh4AG406100 Rh4BG272700 Rh4BG417100 Rh4CG286100 Rh4CG286400 Rh4CG431600 Rh4DG269100 Rh4DG269300 Rh4DG412700 Rh6AG349100 Rh6BG356500 Rh6CG363200 Rh6DG350100
rosa_wichuraiana	Rw4G023060 Rw4G023080 Rw4G034870 Rw6G030370

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	167
AccB1I	GGYRCC	2 cut(s)	4, 753
AccB7I	CCANNNNNTGG	1 cut(s)	750
AccBSI	CCGCTC	1 cut(s)	571
AccI	GTMKAC	1 cut(s)	830
AciI	CCGC	3 cut(s)	389, 569, 610
AclWI	GGATC	1 cut(s)	820
AcsI	RAATTY	1 cut(s)	352
AcuI	CTGAAG	1 cut(s)	617
AcyI	GRCGYC	1 cut(s)	754
AfaI	GTAC	3 cut(s)	185, 365, 707
AfiI	CCNNNNNNNGG	3 cut(s)	193, 532, 750
AflIII	ACRYGT	1 cut(s)	687
AgeI	ACCGGT	1 cut(s)	895
AgsI	TTSAA	3 cut(s)	136, 580, 685
AjiI	CACGTC	1 cut(s)	214
AjnI	CCWGG	1 cut(s)	33
AleI	CACNNNNGTG	1 cut(s)	801
AluBI	AGCT	6 cut(s)	23, 116, 340, 775, 845, 882
AluI	AGCT	6 cut(s)	23, 116, 340, 775, 845, 882
Alw21I	GWGCWC	1 cut(s)	228
Alw26I	GTCTC	1 cut(s)	55
AlwI	GGATC	1 cut(s)	820
AoxI	GGCC	4 cut(s)	36, 312, 542, 625
ApeKI	GCWGC	3 cut(s)	84, 772, 806
ApoI	RAATTY	1 cut(s)	352
AsiGI	ACCGGT	1 cut(s)	895
Asp700I	GAANNNNTTC	1 cut(s)	689
AspLEI	GCGC	2 cut(s)	168, 756
AsuHPI	GGTGA	2 cut(s)	137, 483
BaeGI	GKGCMC	1 cut(s)	527
BanI	GGYRCC	2 cut(s)	4, 753
BanII	GRGCYC	1 cut(s)	560
Bbv12I	GWGCWC	1 cut(s)	228
BbvI	GCAGC	3 cut(s)	71, 784, 793
BccI	CCATC	2 cut(s)	431, 451
BceAI	ACGGC	1 cut(s)	640
BciT130I	CCWGG	1 cut(s)	35
BclI	TGATCA	2 cut(s)	415, 778
BcoDI	GTCTC	1 cut(s)	55
BfaI	CTAG	2 cut(s)	606, 740
BfmI	CTRYAG	1 cut(s)	78
BfoI	RGCGCY	1 cut(s)	757
BisI	GCNGC	4 cut(s)	85, 610, 773, 807
BlsI	GCNGC	4 cut(s)	86, 611, 774, 808
Bme1390I	CCNGG	1 cut(s)	35
BmgBI	CACGTC	1 cut(s)	214
BmiI	GGNNCC	2 cut(s)	6, 755
BmrFI	CCNGG	1 cut(s)	35
BmsI	GCATC	1 cut(s)	376
BpmI	CTGGAG	1 cut(s)	904
Bpu10I	CCTNAGC	1 cut(s)	156
BsaHI	GRCGYC	1 cut(s)	754
BsaJI	CCNNGG	1 cut(s)	821
BsaWI	WCCGGW	1 cut(s)	895
Bsc4I	CCNNNNNNNGG	3 cut(s)	193, 532, 750
Bse118I	RCCGGY	3 cut(s)	584, 833, 895
Bse3DI	GCAATG	1 cut(s)	315
BseBI	CCWGG	1 cut(s)	35
BseDI	CCNNGG	1 cut(s)	821
BseGI	GGATG	1 cut(s)	391
BseLI	CCNNNNNNNGG	3 cut(s)	193, 532, 750
BseMI	GCAATG	1 cut(s)	315
BseMII	CTCAG	2 cut(s)	260, 279
BseRI	GAGGAG	4 cut(s)	236, 374, 552, 555
BseSI	GKGCMC	1 cut(s)	527
BseXI	GCAGC	3 cut(s)	71, 784, 793
BsgI	GTGCAG	1 cut(s)	791
Bsh1285I	CGRYCG	1 cut(s)	896
BshFI	GGCC	4 cut(s)	38, 314, 544, 627
BshNI	GGYRCC	2 cut(s)	4, 753
BshTI	ACCGGT	1 cut(s)	895
BsiEI	CGRYCG	1 cut(s)	896
BsiHKAI	GWGCWC	1 cut(s)	228
BsiSI	CCGG	5 cut(s)	209, 218, 585, 834, 896
BslFI	GGGAC	1 cut(s)	635
BslI	CCNNNNNNNGG	3 cut(s)	193, 532, 750
BsmAI	GTCTC	1 cut(s)	55
BsmFI	GGGAC	1 cut(s)	635
BsnI	GGCC	4 cut(s)	38, 314, 544, 627
Bsp1286I	GDGCHC	3 cut(s)	228, 527, 560
Bsp143I	GATC	4 cut(s)	267, 415, 778, 812
Bsp19I	CCATGG	1 cut(s)	821
BspACI	CCGC	3 cut(s)	389, 569, 610
BspANI	GGCC	4 cut(s)	38, 314, 544, 627
BspCNI	CTCAG	2 cut(s)	259, 280
BspLI	GGNNCC	2 cut(s)	6, 755
BspPI	GGATC	1 cut(s)	820
BspT107I	GGYRCC	2 cut(s)	4, 753
BsrBI	CCGCTC	1 cut(s)	571
BsrDI	GCAATG	1 cut(s)	315
BsrFI	RCCGGY	3 cut(s)	584, 833, 895
BssAI	RCCGGY	3 cut(s)	584, 833, 895
BssECI	CCNNGG	1 cut(s)	821
BssMI	GATC	4 cut(s)	267, 415, 778, 812
BssNAI	GTATAC	1 cut(s)	831
BssNI	GRCGYC	1 cut(s)	754
BssT1I	CCWWGG	1 cut(s)	821
Bst1107I	GTATAC	1 cut(s)	831
Bst2UI	CCWGG	1 cut(s)	35
Bst4CI	ACNGT	3 cut(s)	230, 464, 803
BstACI	GRCGYC	1 cut(s)	754
BstC8I	GCNNGC	4 cut(s)	164, 518, 546, 586
BstDEI	CTNAG	4 cut(s)	156, 246, 288, 733
BstDSI	CCRYGG	1 cut(s)	821
BstF5I	GGATG	1 cut(s)	391
BstH2I	RGCGCY	1 cut(s)	757
BstHHI	GCGC	2 cut(s)	168, 756
BstKTI	GATC	4 cut(s)	270, 418, 781, 815
BstMAI	GTCTC	1 cut(s)	55
BstMBI	GATC	4 cut(s)	267, 415, 778, 812
BstMCI	CGRYCG	1 cut(s)	896
BstMWI	GCNNNNNNNGC	3 cut(s)	214, 223, 522
BstNI	CCWGG	1 cut(s)	35
BstNSI	RCATGY	2 cut(s)	592, 691
BstSCI	CCNGG	1 cut(s)	33
BstSFI	CTRYAG	1 cut(s)	78
BstSLI	GKGCMC	1 cut(s)	527
BstV1I	GCAGC	3 cut(s)	71, 784, 793
BstZ17I	GTATAC	1 cut(s)	831
BsuRI	GGCC	4 cut(s)	38, 314, 544, 627
BtgI	CCRYGG	1 cut(s)	821
BtrI	CACGTC	1 cut(s)	214
BtsCI	GGATG	1 cut(s)	391
BtsI	GCAGTG	1 cut(s)	527
BtsIMutI	CAGTG	1 cut(s)	527
Cac8I	GCNNGC	4 cut(s)	164, 518, 546, 586
CfoI	GCGC	2 cut(s)	168, 756
Cfr10I	RCCGGY	3 cut(s)	584, 833, 895
Csp6I	GTAC	3 cut(s)	184, 364, 706
CspAI	ACCGGT	1 cut(s)	895
CviAII	CATG	7 cut(s)	480, 540, 553, 589, 688, 822, 850
CviQI	GTAC	3 cut(s)	184, 364, 706
DdeI	CTNAG	4 cut(s)	156, 246, 288, 733
DinI	GGCGCC	1 cut(s)	755
DpnI	GATC	4 cut(s)	269, 417, 780, 814
DpnII	GATC	4 cut(s)	267, 415, 778, 812
Eco130I	CCWWGG	1 cut(s)	821
Eco24I	GRGCYC	1 cut(s)	560
Eco32I	GATATC	1 cut(s)	394
Eco57I	CTGAAG	1 cut(s)	617
EcoRII	CCWGG	1 cut(s)	33
EcoRV	GATATC	1 cut(s)	394
EcoT14I	CCWWGG	1 cut(s)	821
EcoT38I	GRGCYC	1 cut(s)	560
EgeI	GGCGCC	1 cut(s)	755
EheI	GGCGCC	1 cut(s)	755
ErhI	CCWWGG	1 cut(s)	821
FaeI	CATG	7 cut(s)	483, 543, 556, 592, 691, 825, 853
FaqI	GGGAC	1 cut(s)	635
FatI	CATG	7 cut(s)	479, 539, 552, 588, 687, 821, 849
FbaI	TGATCA	2 cut(s)	415, 778
FblI	GTMKAC	1 cut(s)	830
Fnu4HI	GCNGC	4 cut(s)	85, 610, 773, 807
FokI	GGATG	1 cut(s)	398
FriOI	GRGCYC	1 cut(s)	560
Fsp4HI	GCNGC	4 cut(s)	85, 610, 773, 807
FspBI	CTAG	2 cut(s)	606, 740
FspI	TGCGCA	1 cut(s)	167
GlaI	GCGC	2 cut(s)	167, 755
GluI	GCNGC	4 cut(s)	85, 610, 773, 807
GsuI	CTGGAG	1 cut(s)	904
HaeII	RGCGCY	1 cut(s)	757
HaeIII	GGCC	4 cut(s)	38, 314, 544, 627
HapII	CCGG	5 cut(s)	209, 218, 585, 834, 896
HhaI	GCGC	2 cut(s)	168, 756
Hin1I	GRCGYC	1 cut(s)	754
Hin1II	CATG	7 cut(s)	483, 543, 556, 592, 691, 825, 853
Hin6I	GCGC	2 cut(s)	166, 754
HinP1I	GCGC	2 cut(s)	166, 754
HinfI	GANTC	3 cut(s)	292, 484, 637
HpaII	CCGG	5 cut(s)	209, 218, 585, 834, 896
HphI	GGTGA	2 cut(s)	137, 483
Hpy166II	GTNNAC	4 cut(s)	787, 796, 831, 901
Hpy188I	TCNGA	3 cut(s)	267, 297, 636
Hpy188III	TCNNGA	2 cut(s)	287, 682
Hpy8I	GTNNAC	4 cut(s)	787, 796, 831, 901
Hpy99I	CGWCG	1 cut(s)	626
HpyAV	CCTTC	2 cut(s)	638, 882
HpyCH4III	ACNGT	3 cut(s)	230, 464, 803
HpyCH4IV	ACGT	4 cut(s)	213, 241, 768, 789
HpyCH4V	TGCA	2 cut(s)	308, 772
HpyF10VI	GCNNNNNNNGC	3 cut(s)	214, 223, 522
HpyF3I	CTNAG	4 cut(s)	156, 246, 288, 733
HpySE526I	ACGT	4 cut(s)	213, 241, 768, 789
Hsp92I	GRCGYC	1 cut(s)	754
Hsp92II	CATG	7 cut(s)	483, 543, 556, 592, 691, 825, 853
HspAI	GCGC	2 cut(s)	166, 754
KasI	GGCGCC	1 cut(s)	753
KroI	GCCGGC	1 cut(s)	584
KroNI	GCCGGC	1 cut(s)	586
Ksp22I	TGATCA	2 cut(s)	415, 778
Kzo9I	GATC	4 cut(s)	267, 415, 778, 812
LmnI	GCTCC	3 cut(s)	92, 223, 345
Lsp1109I	GCAGC	3 cut(s)	71, 784, 793
LweI	GCATC	1 cut(s)	376
MaeI	CTAG	2 cut(s)	606, 740
MaeII	ACGT	4 cut(s)	213, 241, 768, 789
MaeIII	GTNAC	2 cut(s)	103, 485
MalI	GATC	4 cut(s)	269, 417, 780, 814
MbiI	CCGCTC	1 cut(s)	571
MboI	GATC	4 cut(s)	267, 415, 778, 812
MboII	GAAGA	2 cut(s)	623, 685
MhlI	GDGCHC	3 cut(s)	228, 527, 560
MluCI	AATT	1 cut(s)	352
Mly113I	GGCGCC	1 cut(s)	754
MlyI	GAGTC	2 cut(s)	493, 631
MnlI	CCTC	9 cut(s)	87, 198, 214, 294, 352, 573, 576, 819, 853
MroNI	GCCGGC	1 cut(s)	584
MroXI	GAANNNNTTC	1 cut(s)	689
MseI	TTAA	2 cut(s)	174, 300
MslI	CAYNNNNRTG	2 cut(s)	593, 801
MspA1I	CMGCKG	1 cut(s)	23
MspI	CCGG	5 cut(s)	209, 218, 585, 834, 896
MspR9I	CCNGG	1 cut(s)	35
MvaI	CCWGG	1 cut(s)	35
MwoI	GCNNNNNNNGC	3 cut(s)	214, 223, 522
NaeI	GCCGGC	1 cut(s)	586
NarI	GGCGCC	1 cut(s)	754
NcoI	CCATGG	1 cut(s)	821
NdeII	GATC	4 cut(s)	267, 415, 778, 812
NgoMIV	GCCGGC	1 cut(s)	584
NlaIII	CATG	7 cut(s)	483, 543, 556, 592, 691, 825, 853
NlaIV	GGNNCC	2 cut(s)	6, 755
NmuCI	GTSAC	2 cut(s)	103, 485
NsbI	TGCGCA	1 cut(s)	167
NspI	RCATGY	2 cut(s)	592, 691
OliI	CACNNNNGTG	1 cut(s)	801
PciI	ACATGT	1 cut(s)	687
PdiI	GCCGGC	1 cut(s)	586
PdmI	GAANNNNTTC	1 cut(s)	689
PfeI	GAWTC	1 cut(s)	292
PflMI	CCANNNNNTGG	1 cut(s)	750
PinAI	ACCGGT	1 cut(s)	895
PkrI	GCNGC	4 cut(s)	86, 611, 774, 808
PleI	GAGTC	2 cut(s)	492, 631
PluTI	GGCGCC	1 cut(s)	757
PpsI	GAGTC	2 cut(s)	492, 631
PscI	ACATGT	1 cut(s)	687
Psp6I	CCWGG	1 cut(s)	33
PspGI	CCWGG	1 cut(s)	33
PspN4I	GGNNCC	2 cut(s)	6, 755
PsrI	GAACNNNNNNTAC	2 cut(s)	777, 809
PvuII	CAGCTG	1 cut(s)	23
RsaI	GTAC	3 cut(s)	185, 365, 707
RsaNI	GTAC	3 cut(s)	184, 364, 706
RseI	CAYNNNNRTG	2 cut(s)	593, 801
SaqAI	TTAA	2 cut(s)	174, 300
SatI	GCNGC	4 cut(s)	85, 610, 773, 807
Sau3AI	GATC	4 cut(s)	267, 415, 778, 812
SchI	GAGTC	2 cut(s)	493, 631
ScrFI	CCNGG	1 cut(s)	35
SduI	GDGCHC	3 cut(s)	228, 527, 560
SfaNI	GCATC	1 cut(s)	376
SfcI	CTRYAG	1 cut(s)	78
SfoI	GGCGCC	1 cut(s)	755
SmiMI	CAYNNNNRTG	2 cut(s)	593, 801
Sse9I	AATT	1 cut(s)	352
SsiI	CCGC	3 cut(s)	389, 569, 610
SspDI	GGCGCC	1 cut(s)	753
SspMI	CTAG	2 cut(s)	606, 740
StyD4I	CCNGG	1 cut(s)	33
StyI	CCWWGG	1 cut(s)	821
TaaI	ACNGT	3 cut(s)	230, 464, 803
TaiI	ACGT	4 cut(s)	216, 244, 771, 792
TaqI	TCGA	2 cut(s)	270, 600
TasI	AATT	1 cut(s)	352
TatI	WGTACW	2 cut(s)	363, 705
TauI	GCSGC	1 cut(s)	612
TfiI	GAWTC	1 cut(s)	292
Tru1I	TTAA	2 cut(s)	174, 300
Tru9I	TTAA	2 cut(s)	174, 300
TscAI	CASTG	1 cut(s)	527
TseFI	GTSAC	2 cut(s)	103, 485
TseI	GCWGC	3 cut(s)	84, 772, 806
Tsp45I	GTSAC	2 cut(s)	103, 485
TspDTI	ATGAA	2 cut(s)	251, 528
TspGWI	ACGGA	1 cut(s)	332
TspRI	CASTG	1 cut(s)	527
Van91I	CCANNNNNTGG	1 cut(s)	750
XapI	RAATTY	1 cut(s)	352
XceI	RCATGY	2 cut(s)	592, 691
XmiI	GTMKAC	1 cut(s)	830
XmnI	GAANNNNTTC	1 cut(s)	689
XspI	CTAG	2 cut(s)	606, 740

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.