Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr13

Orthogroup ID

OG0001700

Physical Location & Seq

Genomic Coordinates Reverse (-)

6602655 .. 6604528

Gene Structure 1874 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD13G1093700.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 987 bp

ATGGCACCACCAGAAGTTCCAGCTGATGTGTTGCAGGCAACCAGCAACAGTACTACTACAGGCTACTCCAAGAGGGCCTTTGTGACATTTTTAGCCGGTGATGCTGATTATGTCAAAGGGGTTGTGGGTTTGGCTAAGGGCCTACGCAAAGTGAAGAGTGAATACTCTCTTGTGGTTGCAATATTGCCGGACGTGCCGGAGGAGCACCGTGAGATATTACGGTCTCAGGGCTGTATTGTCCAAGAGATCGAACCTATTTATCCTCCTGAGAACCAGATCAAGTTTGCAATGGCCTACTATGTCATCAACTACTCGAAGCTCCGTATTTGGAATTTTGAGGAGTACAGCAAAATGATATATTTGGATGCGGATATCCAAGTGTATGAGAACATAGATCACCTGTTTGCCACGCCTAATGGCTACTTCTACGCTGTGATGGACTGCTTCTGTGAGAAAACTTGGAGTCACTCACCTCAACACAAAATTGGGTATTGCCAGCAGTGCCCTGACAAGGTTTCATGGCCTGCGGACATGGGCTCTCCTCCTCCACTGTACTTCAACGCCGGAATGTTTGTGTTCGAGCCTAGCCGCTTGACTTACAACAGCCTTCTTCAGACACTGCAAGTTGATTTCTTGAACATGTTCTTCCAAAAGACTTACAAACCCATACCAAATATATACAACCTAGTTCTAGCCAATCTTTGGCGCCACCCAGAGAACGTGCAGCTTGATCAAGTAAACGTGGTTCACTACTGTGCTGCAGGATCAAAACCATGGAGGTATACTGGCAAGGAAGCTAACATGGACAGAGAGGATATCAAGGTCTTAGTGGCCAAATGGTGGGAAATTTACAACGACGATTCCCTGGATTTCAAGGCTGAAAACCCAGTAACTGCGGAGGAAGAAACTTTCTCAAAGCCGCTGTCGATCATGGTTTCCCTGCCGGAGCCAACCATTCCATACCTTCCTGCTCCATCTGCTGCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000271 GO:0003674 GO:0003824 GO:0005488 GO:0005536 GO:0005975 GO:0005976 GO:0005977 GO:0005978 GO:0005996 GO:0006012 GO:0006073 GO:0006091 GO:0006112 GO:0006950 GO:0006979 GO:0008150 GO:0008152 GO:0008194 GO:0008378 GO:0008466 GO:0009058 GO:0009059 GO:0009250 GO:0009987 GO:0015980 GO:0016051 GO:0016740 GO:0016757 GO:0016758 GO:0019318 GO:0030246 GO:0033692 GO:0034637 GO:0034645 GO:0035250 GO:0035251 GO:0036094 GO:0043170 GO:0044042 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044262 GO:0044264 GO:0044281 GO:0046527 GO:0047216 GO:0048029 GO:0050896 GO:0055114 GO:0071704 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00052 map00052

Pfam Domains

Protein Families

Glyco_transf_8

Protein Analysis

329

Amino Acids

37.51

Weight (kDa)

5.08

Isoelectric Point (pI)

45.53

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Glyco_transf_8	PF01501	29 - 262	5.9e-41	Glycosyl transferase family 8

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001700)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G60450 AT1G60470
fragaria_vesca	FvH4_4g20790 FvH4_4g34160
malus_domestica	MD13G1093700.v1.1 MD13G1147700.v1.1 MD16G1095000.v1.1
prunus_persica	Prupe.1G111300_v2.0.a1 Prupe.1G251600_v2.0.a1 Prupe.8G258200_v2.0.a1
pyrus_communis	pycom13g08160 pycom13g12730 pycom16g08080 pycom16g08090 pycom16g12600
rosa_chinensis	RchiOBHm_Chr4g0426261 RchiOBHm_Chr4g0443671 RchiOBHm_Chr6g0293551
rosa_laevigata	RLG00000005903 RLG00000007308 RLG00000011942
rosa_multiflora	Rmu_co8279911.1_g000001 Rmu_sc0000730.1_g000037 Rmu_sc0001426.1_g000017 Rmu_sc0032866.1_g000001 Rmu_sc0036604.1_g000001
rosa_roxburghii	Rroxscaffold_5G00368270 Rroxscaffold_5G00384220
rosa_rugosa	Rorug04G0209900 Rorug06G0236400
rosa_samantha	Rh4AG266800 Rh4AG406100 Rh4BG272700 Rh4BG417100 Rh4CG286100 Rh4CG286400 Rh4CG431600 Rh4DG269100 Rh4DG269300 Rh4DG412700 Rh6AG349100 Rh6BG356500 Rh6CG363200 Rh6DG350100
rosa_wichuraiana	Rw4G023060 Rw4G023080 Rw4G034870 Rw6G030370

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	4, 705
AccB7I	CCANNNNNTGG	2 cut(s)	702, 840
AccI	GTMKAC	1 cut(s)	782
AciI	CCGC	5 cut(s)	368, 527, 589, 896, 920
AclWI	GGATC	1 cut(s)	772
AcoI	YGGCCR	1 cut(s)	831
AcsI	RAATTY	2 cut(s)	331, 846
AcuI	CTGAAG	1 cut(s)	596
AcyI	GRCGYC	1 cut(s)	706
AfaI	GTAC	3 cut(s)	52, 344, 554
AfiI	CCNNNNNNNGG	3 cut(s)	511, 702, 840
AflIII	ACRYGT	1 cut(s)	639
AgsI	TTSAA	3 cut(s)	559, 637, 874
AjiI	CACGTC	1 cut(s)	193
AjnI	CCWGG	1 cut(s)	864
AleI	CACNNNNGTG	1 cut(s)	753
AluBI	AGCT	4 cut(s)	23, 319, 727, 797
AluI	AGCT	4 cut(s)	23, 319, 727, 797
Alw21I	GWGCWC	1 cut(s)	207
Alw26I	GTCTC	1 cut(s)	228
AlwI	GGATC	1 cut(s)	772
AlwNI	CAGNNNCTG	2 cut(s)	619, 893
AoxI	GGCC	5 cut(s)	75, 139, 291, 521, 831
ApeKI	GCWGC	3 cut(s)	724, 758, 980
ApoI	RAATTY	2 cut(s)	331, 846
ArsI	GACNNNNNNTTYG	2 cut(s)	908, 940
Asp700I	GAANNNNTTC	1 cut(s)	641
AspLEI	GCGC	1 cut(s)	708
AspS9I	GGNCC	2 cut(s)	75, 139
AsuHPI	GGTGA	3 cut(s)	110, 389, 462
BaeGI	GKGCMC	1 cut(s)	506
BalI	TGGCCA	1 cut(s)	833
BanI	GGYRCC	2 cut(s)	4, 705
BanII	GRGCYC	1 cut(s)	539
BarI	GAAGNNNNNNTAC	2 cut(s)	146, 178
Bbv12I	GWGCWC	1 cut(s)	207
BbvI	GCAGC	3 cut(s)	736, 745, 967
BccI	CCATC	2 cut(s)	430, 982
BciT130I	CCWGG	1 cut(s)	866
BclI	TGATCA	1 cut(s)	730
BcoDI	GTCTC	1 cut(s)	228
BfaI	CTAG	3 cut(s)	585, 686, 692
BfmI	CTRYAG	2 cut(s)	57, 759
BfoI	RGCGCY	1 cut(s)	709
BisI	GCNGC	5 cut(s)	589, 725, 759, 920, 981
BlsI	GCNGC	5 cut(s)	590, 726, 760, 921, 982
BmcAI	AGTACT	1 cut(s)	52
Bme1390I	CCNGG	1 cut(s)	866
BmgBI	CACGTC	1 cut(s)	193
BmgT120I	GGNCC	2 cut(s)	75, 139
BmiI	GGNNCC	3 cut(s)	6, 707, 948
BmrFI	CCNGG	1 cut(s)	866
BmrI	ACTGGG	1 cut(s)	881
BmsI	GCATC	2 cut(s)	91, 355
BmuI	ACTGGG	1 cut(s)	881
Bpu10I	CCTNAGC	1 cut(s)	135
BsaHI	GRCGYC	1 cut(s)	706
BsaI	GGTCTC	1 cut(s)	228
BsaJI	CCNNGG	2 cut(s)	773, 864
Bsc4I	CCNNNNNNNGG	3 cut(s)	511, 702, 840
Bse118I	RCCGGY	1 cut(s)	95
Bse1I	ACTGG	2 cut(s)	790, 887
Bse3DI	GCAATG	1 cut(s)	294
BseBI	CCWGG	1 cut(s)	866
BseDI	CCNNGG	2 cut(s)	773, 864
BseGI	GGATG	1 cut(s)	370
BseLI	CCNNNNNNNGG	3 cut(s)	511, 702, 840
BseMI	GCAATG	1 cut(s)	294
BseMII	CTCAG	2 cut(s)	239, 258
BseNI	ACTGG	2 cut(s)	790, 887
BseRI	GAGGAG	4 cut(s)	215, 353, 531, 534
BseSI	GKGCMC	1 cut(s)	506
BseXI	GCAGC	3 cut(s)	736, 745, 967
BsgI	GTGCAG	1 cut(s)	743
BshFI	GGCC	5 cut(s)	77, 141, 293, 523, 833
BshNI	GGYRCC	2 cut(s)	4, 705
BsiHKAI	GWGCWC	1 cut(s)	207
BsiSI	CCGG	5 cut(s)	96, 188, 197, 564, 944
BslI	CCNNNNNNNGG	3 cut(s)	511, 702, 840
BsmAI	GTCTC	1 cut(s)	228
BsnI	GGCC	5 cut(s)	77, 141, 293, 523, 833
Bso31I	GGTCTC	1 cut(s)	228
Bsp1286I	GDGCHC	3 cut(s)	207, 506, 539
Bsp143I	GATC	6 cut(s)	246, 276, 394, 730, 764, 927
Bsp19I	CCATGG	1 cut(s)	773
BspACI	CCGC	5 cut(s)	368, 527, 589, 896, 920
BspANI	GGCC	5 cut(s)	77, 141, 293, 523, 833
BspCNI	CTCAG	2 cut(s)	238, 259
BspLI	GGNNCC	3 cut(s)	6, 707, 948
BspMAI	CTGCAG	1 cut(s)	763
BspPI	GGATC	1 cut(s)	772
BspT107I	GGYRCC	2 cut(s)	4, 705
BspTNI	GGTCTC	1 cut(s)	228
BsrDI	GCAATG	1 cut(s)	294
BsrFI	RCCGGY	1 cut(s)	95
BsrI	ACTGG	2 cut(s)	790, 887
BssAI	RCCGGY	1 cut(s)	95
BssECI	CCNNGG	2 cut(s)	773, 864
BssMI	GATC	6 cut(s)	246, 276, 394, 730, 764, 927
BssNAI	GTATAC	1 cut(s)	783
BssNI	GRCGYC	1 cut(s)	706
BssT1I	CCWWGG	1 cut(s)	773
Bst1107I	GTATAC	1 cut(s)	783
Bst2UI	CCWGG	1 cut(s)	866
Bst4CI	ACNGT	5 cut(s)	50, 209, 222, 552, 755
Bst6I	CTCTTC	1 cut(s)	149
BstACI	GRCGYC	1 cut(s)	706
BstC8I	GCNNGC	3 cut(s)	36, 497, 525
BstDEI	CTNAG	4 cut(s)	135, 225, 267, 826
BstDSI	CCRYGG	1 cut(s)	773
BstF5I	GGATG	1 cut(s)	370
BstH2I	RGCGCY	1 cut(s)	709
BstHHI	GCGC	1 cut(s)	708
BstKTI	GATC	6 cut(s)	249, 279, 397, 733, 767, 930
BstMAI	GTCTC	1 cut(s)	228
BstMBI	GATC	6 cut(s)	246, 276, 394, 730, 764, 927
BstMWI	GCNNNNNNNGC	5 cut(s)	101, 193, 202, 501, 977
BstNI	CCWGG	1 cut(s)	866
BstNSI	RCATGY	1 cut(s)	643
BstSCI	CCNGG	1 cut(s)	864
BstSFI	CTRYAG	2 cut(s)	57, 759
BstSLI	GKGCMC	1 cut(s)	506
BstV1I	GCAGC	3 cut(s)	736, 745, 967
BstZ17I	GTATAC	1 cut(s)	783
BsuRI	GGCC	5 cut(s)	77, 141, 293, 523, 833
BtgI	CCRYGG	1 cut(s)	773
BtrI	CACGTC	1 cut(s)	193
BtsCI	GGATG	1 cut(s)	370
BtsI	GCAGTG	2 cut(s)	506, 617
BtsIMutI	CAGTG	3 cut(s)	506, 548, 617
Cac8I	GCNNGC	3 cut(s)	36, 497, 525
CaiI	CAGNNNCTG	2 cut(s)	619, 893
CfoI	GCGC	1 cut(s)	708
Cfr10I	RCCGGY	1 cut(s)	95
Cfr13I	GGNCC	2 cut(s)	75, 139
Csp6I	GTAC	3 cut(s)	51, 343, 553
CviAII	CATG	6 cut(s)	519, 532, 640, 774, 802, 931
CviQI	GTAC	3 cut(s)	51, 343, 553
DdeI	CTNAG	4 cut(s)	135, 225, 267, 826
DinI	GGCGCC	1 cut(s)	707
DpnI	GATC	6 cut(s)	248, 278, 396, 732, 766, 929
DpnII	GATC	6 cut(s)	246, 276, 394, 730, 764, 927
EaeI	YGGCCR	1 cut(s)	831
Eam1104I	CTCTTC	1 cut(s)	149
EarI	CTCTTC	1 cut(s)	149
Eco130I	CCWWGG	1 cut(s)	773
Eco24I	GRGCYC	1 cut(s)	539
Eco31I	GGTCTC	1 cut(s)	228
Eco32I	GATATC	2 cut(s)	373, 817
Eco57I	CTGAAG	1 cut(s)	596
EcoO109I	RGGNCCY	2 cut(s)	75, 139
EcoRII	CCWGG	1 cut(s)	864
EcoRV	GATATC	2 cut(s)	373, 817
EcoT14I	CCWWGG	1 cut(s)	773
EcoT38I	GRGCYC	1 cut(s)	539
EgeI	GGCGCC	1 cut(s)	707
EheI	GGCGCC	1 cut(s)	707
ErhI	CCWWGG	1 cut(s)	773
FaeI	CATG	6 cut(s)	522, 535, 643, 777, 805, 934
FalI	AAGNNNNNCTT	2 cut(s)	62, 94
FatI	CATG	6 cut(s)	518, 531, 639, 773, 801, 930
FbaI	TGATCA	1 cut(s)	730
FblI	GTMKAC	1 cut(s)	782
Fnu4HI	GCNGC	5 cut(s)	589, 725, 759, 920, 981
FokI	GGATG	1 cut(s)	377
FriOI	GRGCYC	1 cut(s)	539
Fsp4HI	GCNGC	5 cut(s)	589, 725, 759, 920, 981
FspBI	CTAG	3 cut(s)	585, 686, 692
GlaI	GCGC	1 cut(s)	707
GluI	GCNGC	5 cut(s)	589, 725, 759, 920, 981
HaeII	RGCGCY	1 cut(s)	709
HaeIII	GGCC	5 cut(s)	77, 141, 293, 523, 833
HapII	CCGG	5 cut(s)	96, 188, 197, 564, 944
HhaI	GCGC	1 cut(s)	708
Hin1I	GRCGYC	1 cut(s)	706
Hin1II	CATG	6 cut(s)	522, 535, 643, 777, 805, 934
Hin6I	GCGC	1 cut(s)	706
HinP1I	GCGC	1 cut(s)	706
HinfI	GANTC	2 cut(s)	463, 860
HpaII	CCGG	5 cut(s)	96, 188, 197, 564, 944
HphI	GGTGA	3 cut(s)	110, 389, 462
Hpy166II	GTNNAC	3 cut(s)	739, 748, 783
Hpy188I	TCNGA	1 cut(s)	615
Hpy188III	TCNNGA	2 cut(s)	266, 634
Hpy8I	GTNNAC	3 cut(s)	739, 748, 783
Hpy99I	CGWCG	1 cut(s)	860
HpyAV	CCTTC	2 cut(s)	617, 974
HpyCH4III	ACNGT	5 cut(s)	50, 209, 222, 552, 755
HpyCH4IV	ACGT	3 cut(s)	192, 720, 741
HpyCH4V	TGCA	6 cut(s)	34, 179, 287, 622, 724, 761
HpyF10VI	GCNNNNNNNGC	5 cut(s)	101, 193, 202, 501, 977
HpyF3I	CTNAG	4 cut(s)	135, 225, 267, 826
HpySE526I	ACGT	3 cut(s)	192, 720, 741
Hsp92I	GRCGYC	1 cut(s)	706
Hsp92II	CATG	6 cut(s)	522, 535, 643, 777, 805, 934
HspAI	GCGC	1 cut(s)	706
KasI	GGCGCC	1 cut(s)	705
Ksp22I	TGATCA	1 cut(s)	730
Kzo9I	GATC	6 cut(s)	246, 276, 394, 730, 764, 927
LmnI	GCTCC	4 cut(s)	202, 324, 946, 976
Lsp1109I	GCAGC	3 cut(s)	736, 745, 967
LweI	GCATC	2 cut(s)	91, 355
MaeI	CTAG	3 cut(s)	585, 686, 692
MaeII	ACGT	3 cut(s)	192, 720, 741
MaeIII	GTNAC	3 cut(s)	82, 464, 889
MalI	GATC	6 cut(s)	248, 278, 396, 732, 766, 929
MboI	GATC	6 cut(s)	246, 276, 394, 730, 764, 927
MboII	GAAGA	4 cut(s)	166, 602, 637, 914
MhlI	GDGCHC	3 cut(s)	207, 506, 539
MlsI	TGGCCA	1 cut(s)	833
MluCI	AATT	3 cut(s)	331, 483, 846
MluNI	TGGCCA	1 cut(s)	833
Mly113I	GGCGCC	1 cut(s)	706
MlyI	GAGTC	1 cut(s)	472
Mox20I	TGGCCA	1 cut(s)	833
MroXI	GAANNNNTTC	1 cut(s)	641
MscI	TGGCCA	1 cut(s)	833
MslI	CAYNNNNRTG	1 cut(s)	753
Msp20I	TGGCCA	1 cut(s)	833
MspA1I	CMGCKG	2 cut(s)	23, 922
MspI	CCGG	5 cut(s)	96, 188, 197, 564, 944
MspR9I	CCNGG	1 cut(s)	866
MvaI	CCWGG	1 cut(s)	866
MwoI	GCNNNNNNNGC	5 cut(s)	101, 193, 202, 501, 977
NarI	GGCGCC	1 cut(s)	706
NcoI	CCATGG	1 cut(s)	773
NdeII	GATC	6 cut(s)	246, 276, 394, 730, 764, 927
NlaIII	CATG	6 cut(s)	522, 535, 643, 777, 805, 934
NlaIV	GGNNCC	3 cut(s)	6, 707, 948
NmuCI	GTSAC	2 cut(s)	82, 464
NspI	RCATGY	1 cut(s)	643
OliI	CACNNNNGTG	1 cut(s)	753
PciI	ACATGT	1 cut(s)	639
PdmI	GAANNNNTTC	1 cut(s)	641
PfeI	GAWTC	1 cut(s)	860
PflMI	CCANNNNNTGG	2 cut(s)	702, 840
PkrI	GCNGC	5 cut(s)	590, 726, 760, 921, 982
PleI	GAGTC	1 cut(s)	471
PluTI	GGCGCC	1 cut(s)	709
PpsI	GAGTC	1 cut(s)	471
PscI	ACATGT	1 cut(s)	639
Psp6I	CCWGG	1 cut(s)	864
PspGI	CCWGG	1 cut(s)	864
PspN4I	GGNNCC	3 cut(s)	6, 707, 948
PspPI	GGNCC	2 cut(s)	75, 139
PsrI	GAACNNNNNNTAC	2 cut(s)	729, 761
PstI	CTGCAG	1 cut(s)	763
PstNI	CAGNNNCTG	2 cut(s)	619, 893
PvuII	CAGCTG	1 cut(s)	23
RsaI	GTAC	3 cut(s)	52, 344, 554
RsaNI	GTAC	3 cut(s)	51, 343, 553
RseI	CAYNNNNRTG	1 cut(s)	753
SatI	GCNGC	5 cut(s)	589, 725, 759, 920, 981
Sau3AI	GATC	6 cut(s)	246, 276, 394, 730, 764, 927
Sau96I	GGNCC	2 cut(s)	75, 139
ScaI	AGTACT	1 cut(s)	52
SchI	GAGTC	1 cut(s)	472
ScrFI	CCNGG	1 cut(s)	866
SduI	GDGCHC	3 cut(s)	207, 506, 539
SfaNI	GCATC	2 cut(s)	91, 355
SfcI	CTRYAG	2 cut(s)	57, 759
SfoI	GGCGCC	1 cut(s)	707
SmiMI	CAYNNNNRTG	1 cut(s)	753
Sse9I	AATT	3 cut(s)	331, 483, 846
SsiI	CCGC	5 cut(s)	368, 527, 589, 896, 920
SspDI	GGCGCC	1 cut(s)	705
SspI	AATATT	1 cut(s)	183
SspMI	CTAG	3 cut(s)	585, 686, 692
StyD4I	CCNGG	1 cut(s)	864
StyI	CCWWGG	1 cut(s)	773
TaaI	ACNGT	5 cut(s)	50, 209, 222, 552, 755
TaiI	ACGT	3 cut(s)	195, 723, 744
TaqI	TCGA	4 cut(s)	249, 314, 579, 926
TasI	AATT	3 cut(s)	331, 483, 846
TatI	WGTACW	3 cut(s)	50, 342, 552
TauI	GCSGC	2 cut(s)	591, 922
TfiI	GAWTC	1 cut(s)	860
TscAI	CASTG	3 cut(s)	506, 555, 624
TseFI	GTSAC	2 cut(s)	82, 464
TseI	GCWGC	3 cut(s)	724, 758, 980
Tsp45I	GTSAC	2 cut(s)	82, 464
TspDTI	ATGAA	1 cut(s)	507
TspGWI	ACGGA	1 cut(s)	311
TspRI	CASTG	3 cut(s)	506, 555, 624
Van91I	CCANNNNNTGG	2 cut(s)	702, 840
XapI	RAATTY	2 cut(s)	331, 846
XceI	RCATGY	1 cut(s)	643
XmiI	GTMKAC	1 cut(s)	782
XmnI	GAANNNNTTC	1 cut(s)	641
XspI	CTAG	3 cut(s)	585, 686, 692
ZrmI	AGTACT	1 cut(s)	52

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.