Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp08

Orthogroup ID

OG0001700

Physical Location & Seq

Genomic Coordinates Reverse (-)

21941186 .. 21942607

Gene Structure 1422 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.8G258200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 936 bp

ATGGACCCCGTGAGCAAAGCCTATGTCACCTTCTTGGCAGGCAACAAAGACTATGTGAAGGGAGTTGTGGGTTTGGCTAAGGGCTTAAGAAAGGCCAAGTCCCAATACCCACTTGTCGTGGCGGTGCTTCCTGATGTTCCCCAGGACCACAGGGACATTCTTGAATCCCAAGGCTGTATTGTCCAAGAGATCGAGCCTGTTTACCCGTCAGAGAATCACCAAACCCAGTTTGCCATGGCTTATTATGTCATTAATTACTCTAAGCTTCGGATTTTTAAGTTTGTGGAGTATAGCAAGATGATATATTTGGACGGAGACATACAAGTGTTTGAGAATATTGACCACCTTTTTGAGCTCCCCGATGGCTTCTTGTACGCCGTCATGGACTGCTTCTGTGAGAAAACATGGAGCCACACCCCTCAGAACAAGATTGGATATTGCCAACAATGCCCGGAAAAGGTTCAGTGGCCTGCAGCTGAGTTAGGGTCTCCACCCCCGCCTTACTTCAACGCCGGCATGTTTGTGTATGAGCCTAAAATCTCCACCTACAATGACCTCTTGGCTGCCGTCCAAGCTACTCCTCCCACTCCATTTGCTGAGCAGGACTTGTTGAACATGTTCTTTAGGGATATCTATAAGCCTATCCCTTCCGAGTACAACTTTGTTTTGGCTATGCTATGGCGACATCCTGAGAATGCGAAGCTTGATGCACTCAAAGTTGTTCACTATTGTGCTGCGGGATCAAAGCCATGGAGGTACACAGGGGAGGAGGAGAACATGGAAAGAGAAGACATAAAAATGCTGGTGAAGAAATGGTGGGACATTTACGAAGACAAGACATTGGATTTGAAGGCGGCTCCTGCTGTTGCTACTTTGGTTGACCCAGAACCACTCAGTGACATTGTTCAAGGAAGAAGTGCCCCTTCGGCTGCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00052 map00052

Pfam Domains

Protein Families

Glyco_transf_8

Protein Analysis

312

Amino Acids

35.47

Weight (kDa)

5.08

Isoelectric Point (pI)

40.73

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001700)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G60450 AT1G60470
fragaria_vesca	FvH4_4g20790 FvH4_4g34160
malus_domestica	MD13G1093700.v1.1 MD13G1147700.v1.1 MD16G1095000.v1.1
prunus_persica	Prupe.1G111300_v2.0.a1 Prupe.1G251600_v2.0.a1 Prupe.8G258200_v2.0.a1
pyrus_communis	pycom13g08160 pycom13g12730 pycom16g08080 pycom16g08090 pycom16g12600
rosa_chinensis	RchiOBHm_Chr4g0426261 RchiOBHm_Chr4g0443671 RchiOBHm_Chr6g0293551
rosa_laevigata	RLG00000005903 RLG00000007308 RLG00000011942
rosa_multiflora	Rmu_co8279911.1_g000001 Rmu_sc0000730.1_g000037 Rmu_sc0001426.1_g000017 Rmu_sc0032866.1_g000001 Rmu_sc0036604.1_g000001
rosa_roxburghii	Rroxscaffold_5G00368270 Rroxscaffold_5G00384220
rosa_rugosa	Rorug04G0209900 Rorug06G0236400
rosa_samantha	Rh4AG266800 Rh4AG406100 Rh4BG272700 Rh4BG417100 Rh4CG286100 Rh4CG286400 Rh4CG431600 Rh4DG269100 Rh4DG269300 Rh4DG412700 Rh6AG349100 Rh6BG356500 Rh6CG363200 Rh6DG350100
rosa_wichuraiana	Rw4G023060 Rw4G023080 Rw4G034870 Rw6G030370

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	4 cut(s)	122, 497, 737, 854
AclWI	GGATC	1 cut(s)	748
AdeI	CACNNNGTG	1 cut(s)	896
AfaI	GTAC	3 cut(s)	374, 656, 758
AfiI	CCNNNNNNNGG	1 cut(s)	457
AflII	CTTAAG	1 cut(s)	85
AflIII	ACRYGT	1 cut(s)	615
AgsI	TTSAA	5 cut(s)	164, 508, 613, 850, 908
AjnI	CCWGG	1 cut(s)	141
AleI	CACNNNNGTG	1 cut(s)	729
AluBI	AGCT	5 cut(s)	265, 355, 476, 575, 703
AluI	AGCT	5 cut(s)	265, 355, 476, 575, 703
Alw21I	GWGCWC	1 cut(s)	357
Alw26I	GTCTC	2 cut(s)	309, 492
AlwI	GGATC	1 cut(s)	748
AoxI	GGCC	2 cut(s)	93, 467
ApeKI	GCWGC	4 cut(s)	473, 563, 734, 929
ArsI	GACNNNNNNTTYG	6 cut(s)	9, 41, 332, 364, 829, 861
AseI	ATTAAT	1 cut(s)	252
Asp700I	GAANNNNTTC	2 cut(s)	459, 617
AspS9I	GGNCC	2 cut(s)	4, 145
AsuC2I	CCSGG	1 cut(s)	452
AsuHPI	GGTGA	3 cut(s)	19, 209, 817
AvaII	GGWCC	2 cut(s)	4, 145
BaeGI	GKGCMC	1 cut(s)	922
BanII	GRGCYC	1 cut(s)	357
BbsI	GAAGAC	2 cut(s)	795, 837
Bbv12I	GWGCWC	1 cut(s)	357
BbvI	GCAGC	4 cut(s)	485, 550, 721, 916
BccI	CCATC	1 cut(s)	356
BceAI	ACGGC	2 cut(s)	362, 551
BciT130I	CCWGG	1 cut(s)	143
BcnI	CCSGG	1 cut(s)	452
BcoDI	GTCTC	2 cut(s)	309, 492
BfmI	CTRYAG	1 cut(s)	471
BfrI	CTTAAG	1 cut(s)	85
BglI	GCCNNNNNGGC	1 cut(s)	926
BisI	GCNGC	5 cut(s)	474, 564, 735, 855, 930
BlpI	GCTNAGC	1 cut(s)	597
BlsI	GCNGC	5 cut(s)	475, 565, 736, 856, 931
Bme1390I	CCNGG	2 cut(s)	143, 452
Bme18I	GGWCC	2 cut(s)	4, 145
BmgT120I	GGNCC	2 cut(s)	4, 145
BmiI	GGNNCC	3 cut(s)	6, 410, 858
BmrFI	CCNGG	2 cut(s)	143, 452
BmrI	ACTGGG	1 cut(s)	220
BmsI	GCATC	1 cut(s)	697
BmuI	ACTGGG	1 cut(s)	220
BpiI	GAAGAC	2 cut(s)	795, 837
Bpu10I	CCTNAGC	1 cut(s)	78
Bpu1102I	GCTNAGC	1 cut(s)	597
BpuMI	CCSGG	1 cut(s)	452
BsaI	GGTCTC	1 cut(s)	492
BsaJI	CCNNGG	4 cut(s)	141, 169, 234, 749
Bsc4I	CCNNNNNNNGG	1 cut(s)	457
Bse118I	RCCGGY	1 cut(s)	512
Bse1I	ACTGG	1 cut(s)	226
BseBI	CCWGG	1 cut(s)	143
BseDI	CCNNGG	4 cut(s)	141, 169, 234, 749
BseGI	GGATG	1 cut(s)	685
BseLI	CCNNNNNNNGG	1 cut(s)	457
BseMII	CTCAG	5 cut(s)	434, 468, 588, 681, 907
BseNI	ACTGG	1 cut(s)	226
BseRI	GAGGAG	3 cut(s)	570, 782, 785
BseSI	GKGCMC	1 cut(s)	922
BseXI	GCAGC	4 cut(s)	485, 550, 721, 916
BshFI	GGCC	2 cut(s)	95, 469
BsiHKAI	GWGCWC	1 cut(s)	357
BsiSI	CCGG	2 cut(s)	452, 513
BslFI	GGGAC	3 cut(s)	85, 167, 833
BslI	CCNNNNNNNGG	1 cut(s)	457
BsmAI	GTCTC	2 cut(s)	309, 492
BsmFI	GGGAC	3 cut(s)	85, 167, 833
BsmI	GAATGC	1 cut(s)	700
BsnI	GGCC	2 cut(s)	95, 469
Bso31I	GGTCTC	1 cut(s)	492
Bsp1286I	GDGCHC	2 cut(s)	357, 922
Bsp143I	GATC	2 cut(s)	189, 740
Bsp1720I	GCTNAGC	1 cut(s)	597
Bsp19I	CCATGG	2 cut(s)	234, 749
BspACI	CCGC	4 cut(s)	122, 497, 737, 854
BspANI	GGCC	2 cut(s)	95, 469
BspCNI	CTCAG	5 cut(s)	433, 469, 589, 682, 906
BspLI	GGNNCC	3 cut(s)	6, 410, 858
BspMAI	CTGCAG	1 cut(s)	475
BspPI	GGATC	1 cut(s)	748
BspTI	CTTAAG	1 cut(s)	85
BspTNI	GGTCTC	1 cut(s)	492
BsrFI	RCCGGY	1 cut(s)	512
BsrI	ACTGG	1 cut(s)	226
BssAI	RCCGGY	1 cut(s)	512
BssECI	CCNNGG	4 cut(s)	141, 169, 234, 749
BssMI	GATC	2 cut(s)	189, 740
BssT1I	CCWWGG	3 cut(s)	169, 234, 749
Bst2UI	CCWGG	1 cut(s)	143
BstAFI	CTTAAG	1 cut(s)	85
BstC8I	GCNNGC	3 cut(s)	40, 471, 514
BstDEI	CTNAG	8 cut(s)	78, 261, 420, 477, 597, 690, 893, 933
BstDSI	CCRYGG	2 cut(s)	234, 749
BstF5I	GGATG	1 cut(s)	685
BstKTI	GATC	2 cut(s)	192, 743
BstMAI	GTCTC	2 cut(s)	309, 492
BstMBI	GATC	2 cut(s)	189, 740
BstMWI	GCNNNNNNNGC	4 cut(s)	447, 572, 860, 926
BstNI	CCWGG	1 cut(s)	143
BstNSI	RCATGY	2 cut(s)	520, 619
BstSCI	CCNGG	2 cut(s)	141, 450
BstSFI	CTRYAG	1 cut(s)	471
BstSLI	GKGCMC	1 cut(s)	922
BstV1I	GCAGC	4 cut(s)	485, 550, 721, 916
BstV2I	GAAGAC	2 cut(s)	795, 837
BsuRI	GGCC	2 cut(s)	95, 469
BtgI	CCRYGG	2 cut(s)	234, 749
BtsCI	GGATG	1 cut(s)	685
BtsIMutI	CAGTG	2 cut(s)	470, 901
Cac8I	GCNNGC	3 cut(s)	40, 471, 514
Cfr10I	RCCGGY	1 cut(s)	512
Cfr13I	GGNCC	2 cut(s)	4, 145
Csp6I	GTAC	3 cut(s)	373, 655, 757
CspCI	CAANNNNNGTGG	2 cut(s)	574, 609
CviAII	CATG	7 cut(s)	235, 382, 405, 517, 616, 750, 778
CviQI	GTAC	3 cut(s)	373, 655, 757
DdeI	CTNAG	8 cut(s)	78, 261, 420, 477, 597, 690, 893, 933
DpnI	GATC	2 cut(s)	191, 742
DpnII	GATC	2 cut(s)	189, 740
DraIII	CACNNNGTG	1 cut(s)	896
Ecl136II	GAGCTC	1 cut(s)	355
Eco130I	CCWWGG	3 cut(s)	169, 234, 749
Eco24I	GRGCYC	1 cut(s)	357
Eco31I	GGTCTC	1 cut(s)	492
Eco32I	GATATC	1 cut(s)	631
Eco47I	GGWCC	2 cut(s)	4, 145
Eco53kI	GAGCTC	1 cut(s)	355
EcoICRI	GAGCTC	1 cut(s)	355
EcoRII	CCWGG	1 cut(s)	141
EcoRV	GATATC	1 cut(s)	631
EcoT14I	CCWWGG	3 cut(s)	169, 234, 749
EcoT38I	GRGCYC	1 cut(s)	357
ErhI	CCWWGG	3 cut(s)	169, 234, 749
FaeI	CATG	7 cut(s)	238, 385, 408, 520, 619, 753, 781
FalI	AAGNNNNNCTT	1 cut(s)	907
FaqI	GGGAC	3 cut(s)	85, 167, 833
FatI	CATG	7 cut(s)	234, 381, 404, 516, 615, 749, 777
FauI	CCCGC	2 cut(s)	504, 730
Fnu4HI	GCNGC	5 cut(s)	474, 564, 735, 855, 930
FokI	GGATG	1 cut(s)	672
FriOI	GRGCYC	1 cut(s)	357
Fsp4HI	GCNGC	5 cut(s)	474, 564, 735, 855, 930
GluI	GCNGC	5 cut(s)	474, 564, 735, 855, 930
HaeIII	GGCC	2 cut(s)	95, 469
HapII	CCGG	2 cut(s)	452, 513
Hin1II	CATG	7 cut(s)	238, 385, 408, 520, 619, 753, 781
HincII	GTYRAC	1 cut(s)	880
HindII	GTYRAC	1 cut(s)	880
HindIII	AAGCTT	2 cut(s)	263, 701
HinfI	GANTC	2 cut(s)	164, 214
HpaII	CCGG	2 cut(s)	452, 513
HphI	GGTGA	3 cut(s)	19, 209, 817
Hpy166II	GTNNAC	4 cut(s)	202, 724, 759, 880
Hpy188I	TCNGA	4 cut(s)	211, 270, 423, 652
Hpy188III	TCNNGA	3 cut(s)	131, 161, 689
Hpy8I	GTNNAC	4 cut(s)	202, 724, 759, 880
HpyAV	CCTTC	5 cut(s)	40, 52, 657, 844, 933
HpyCH4V	TGCA	2 cut(s)	473, 710
HpyF10VI	GCNNNNNNNGC	4 cut(s)	447, 572, 860, 926
HpyF3I	CTNAG	8 cut(s)	78, 261, 420, 477, 597, 690, 893, 933
Hsp92II	CATG	7 cut(s)	238, 385, 408, 520, 619, 753, 781
KroI	GCCGGC	1 cut(s)	512
KroNI	GCCGGC	1 cut(s)	514
Kzo9I	GATC	2 cut(s)	189, 740
LmnI	GCTCC	3 cut(s)	360, 408, 862
Lsp1109I	GCAGC	4 cut(s)	485, 550, 721, 916
LweI	GCATC	1 cut(s)	697
MaeIII	GTNAC	2 cut(s)	25, 896
MalI	GATC	2 cut(s)	191, 742
MboI	GATC	2 cut(s)	189, 740
MboII	GAAGA	4 cut(s)	800, 820, 842, 924
MhlI	GDGCHC	2 cut(s)	357, 922
MluCI	AATT	1 cut(s)	253
MnlI	CCTC	6 cut(s)	429, 566, 591, 747, 760, 763
MroNI	GCCGGC	1 cut(s)	512
MroXI	GAANNNNTTC	2 cut(s)	459, 617
MseI	TTAA	3 cut(s)	86, 252, 276
MslI	CAYNNNNRTG	4 cut(s)	323, 521, 729, 797
MspA1I	CMGCKG	1 cut(s)	476
MspCI	CTTAAG	1 cut(s)	85
MspI	CCGG	2 cut(s)	452, 513
MspR9I	CCNGG	2 cut(s)	143, 452
Mva1269I	GAATGC	1 cut(s)	700
MvaI	CCWGG	1 cut(s)	143
MwoI	GCNNNNNNNGC	4 cut(s)	447, 572, 860, 926
NaeI	GCCGGC	1 cut(s)	514
NciI	CCSGG	1 cut(s)	452
NcoI	CCATGG	2 cut(s)	234, 749
NdeII	GATC	2 cut(s)	189, 740
NgoMIV	GCCGGC	1 cut(s)	512
NlaIII	CATG	7 cut(s)	238, 385, 408, 520, 619, 753, 781
NlaIV	GGNNCC	3 cut(s)	6, 410, 858
NmuCI	GTSAC	2 cut(s)	25, 896
NspI	RCATGY	2 cut(s)	520, 619
OliI	CACNNNNGTG	1 cut(s)	729
PciI	ACATGT	1 cut(s)	615
PctI	GAATGC	1 cut(s)	700
PdiI	GCCGGC	1 cut(s)	514
PdmI	GAANNNNTTC	2 cut(s)	459, 617
PfeI	GAWTC	2 cut(s)	164, 214
PkrI	GCNGC	5 cut(s)	475, 565, 736, 856, 931
PscI	ACATGT	1 cut(s)	615
PshBI	ATTAAT	1 cut(s)	252
Psp124BI	GAGCTC	1 cut(s)	357
Psp6I	CCWGG	1 cut(s)	141
PspGI	CCWGG	1 cut(s)	141
PspN4I	GGNNCC	3 cut(s)	6, 410, 858
PspPI	GGNCC	2 cut(s)	4, 145
PstI	CTGCAG	1 cut(s)	475
PvuII	CAGCTG	1 cut(s)	476
RsaI	GTAC	3 cut(s)	374, 656, 758
RsaNI	GTAC	3 cut(s)	373, 655, 757
RseI	CAYNNNNRTG	4 cut(s)	323, 521, 729, 797
SacI	GAGCTC	1 cut(s)	357
SaqAI	TTAA	3 cut(s)	86, 252, 276
SatI	GCNGC	5 cut(s)	474, 564, 735, 855, 930
Sau3AI	GATC	2 cut(s)	189, 740
Sau96I	GGNCC	2 cut(s)	4, 145
ScrFI	CCNGG	2 cut(s)	143, 452
SduI	GDGCHC	2 cut(s)	357, 922
SfaNI	GCATC	1 cut(s)	697
SfcI	CTRYAG	1 cut(s)	471
SinI	GGWCC	2 cut(s)	4, 145
SmiMI	CAYNNNNRTG	4 cut(s)	323, 521, 729, 797
SmlI	CTYRAG	1 cut(s)	85
SmoI	CTYRAG	1 cut(s)	85
Sse9I	AATT	1 cut(s)	253
SsiI	CCGC	4 cut(s)	122, 497, 737, 854
SspI	AATATT	1 cut(s)	337
SstI	GAGCTC	1 cut(s)	357
StyD4I	CCNGG	2 cut(s)	141, 450
StyI	CCWWGG	3 cut(s)	169, 234, 749
TaqI	TCGA	1 cut(s)	192
TasI	AATT	1 cut(s)	253
TatI	WGTACW	1 cut(s)	654
TauI	GCSGC	1 cut(s)	857
TfiI	GAWTC	2 cut(s)	164, 214
Tru1I	TTAA	3 cut(s)	86, 252, 276
Tru9I	TTAA	3 cut(s)	86, 252, 276
TscAI	CASTG	2 cut(s)	470, 901
TseFI	GTSAC	2 cut(s)	25, 896
TseI	GCWGC	4 cut(s)	473, 563, 734, 929
Tsp45I	GTSAC	2 cut(s)	25, 896
TspGWI	ACGGA	1 cut(s)	327
TspRI	CASTG	2 cut(s)	470, 901
Vha464I	CTTAAG	1 cut(s)	85
VpaK11BI	GGWCC	2 cut(s)	4, 145
VspI	ATTAAT	1 cut(s)	252
XceI	RCATGY	2 cut(s)	520, 619
XmnI	GAANNNNTTC	2 cut(s)	459, 617

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.