Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4B

Orthogroup ID

OG0001700

Physical Location & Seq

Genomic Coordinates Forward (+)

56452798 .. 56455460

Gene Structure 2663 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4BG417100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 738 bp

ATGGCTCCACCTGAAGTTCCGGTAGATGTGTTCACGGCCACCAGCAAGGTCTTGACGTTGAGTGCAGGCTACTCCAAGAGGGCCTATGTGACATTCTTAGCCGGTAATGGTGACTACGTCAAAGGAGTCGTGGGATTGGCTAAGGGTTTGCGCAAGGTGAAGACTGCCTACCCTCTAGTGGTTGCAATATTGCCTGACGTCCCGGAAGAACACCGTGAGATTTTGAGGTCTCAAGGTTGTATTGTTCGTGAGATCGTGCCAATTTATCCTCCTAAGAACCAAGTCGAGTTTGCTATGGCATATTATGTCATCAACTACTCCAAGCTCCGGATTTGGAATTTTGAGGAGTACAGCAAGATGATATATTTGGATGCGGACATCCAAGTGTACAACAACATAGATCACCTCTTTGACACTCCTGATGGATACTTCTATGCCGTGATGGATTGCTTCTGTGAACATACATGGAGTCACTCGCCGCAGTACAAAGTTGGGTATTGCCAGCAGTGCCCAGACAAGGTTACATGGCCGGCCGAGATGGGTTCTCCTCCTCCGTCGTACTTCAACGCCGGCATGTTTGTGTTTGAGCCTAATCGTTTGACCTACGAAAGCCTTCTCGAGAATCTCCTGGTTGTTCCTCCCACACCTTTTGCAGAGCAAGTGAGTGTATTCCTCAGTAATTCTGTAATGAAAATTGATTGCTCTTTTTTTCTTTTTTCTGTCCTCATTTCTTATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000271 GO:0003674 GO:0003824 GO:0005488 GO:0005536 GO:0005975 GO:0005976 GO:0005977 GO:0005978 GO:0005996 GO:0006012 GO:0006073 GO:0006091 GO:0006112 GO:0006950 GO:0006979 GO:0008150 GO:0008152 GO:0008194 GO:0008378 GO:0008466 GO:0009058 GO:0009059 GO:0009250 GO:0009987 GO:0015980 GO:0016051 GO:0016740 GO:0016757 GO:0016758 GO:0019318 GO:0030246 GO:0033692 GO:0034637 GO:0034645 GO:0035250 GO:0035251 GO:0036094 GO:0043170 GO:0044042 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044262 GO:0044264 GO:0044281 GO:0046527 GO:0047216 GO:0048029 GO:0050896 GO:0055114 GO:0071704 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00052 map00052

Pfam Domains

Protein Families

Glyco_transf_8

Protein Analysis

245

Amino Acids

27.86

Weight (kDa)

5.24

Isoelectric Point (pI)

37.54

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Glyco_transf_8	PF01501	31 - 210	6.1e-32	Glycosyl transferase family 8

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001700)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G60450 AT1G60470
fragaria_vesca	FvH4_4g20790 FvH4_4g34160
malus_domestica	MD13G1093700.v1.1 MD13G1147700.v1.1 MD16G1095000.v1.1
prunus_persica	Prupe.1G111300_v2.0.a1 Prupe.1G251600_v2.0.a1 Prupe.8G258200_v2.0.a1
pyrus_communis	pycom13g08160 pycom13g12730 pycom16g08080 pycom16g08090 pycom16g12600
rosa_chinensis	RchiOBHm_Chr4g0426261 RchiOBHm_Chr4g0443671 RchiOBHm_Chr6g0293551
rosa_laevigata	RLG00000005903 RLG00000007308 RLG00000011942
rosa_multiflora	Rmu_co8279911.1_g000001 Rmu_sc0000730.1_g000037 Rmu_sc0001426.1_g000017 Rmu_sc0032866.1_g000001 Rmu_sc0036604.1_g000001
rosa_roxburghii	Rroxscaffold_5G00368270 Rroxscaffold_5G00384220
rosa_rugosa	Rorug04G0209900 Rorug06G0236400
rosa_samantha	Rh4AG266800 Rh4AG406100 Rh4BG272700 Rh4BG417100 Rh4CG286100 Rh4CG286400 Rh4CG431600 Rh4DG269100 Rh4DG269300 Rh4DG412700 Rh6AG349100 Rh6BG356500 Rh6CG363200 Rh6DG350100
rosa_wichuraiana	Rw4G023060 Rw4G023080 Rw4G034870 Rw6G030370

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	201
Acc16I	TGCGCA	1 cut(s)	152
AccIII	TCCGGA	1 cut(s)	327
AciI	CCGC	2 cut(s)	374, 479
AcoI	YGGCCR	3 cut(s)	36, 527, 531
AcsI	RAATTY	1 cut(s)	337
AcuI	CTGAAG	1 cut(s)	33
AcyI	GRCGYC	1 cut(s)	198
AfaI	GTAC	4 cut(s)	350, 389, 485, 560
AfiI	CCNNNNNNNGG	3 cut(s)	178, 327, 517
AgsI	TTSAA	1 cut(s)	565
AjnI	CCWGG	1 cut(s)	627
AluBI	AGCT	1 cut(s)	325
AluI	AGCT	1 cut(s)	325
Alw26I	GTCTC	1 cut(s)	234
Ama87I	CYCGRG	1 cut(s)	617
Aor13HI	TCCGGA	1 cut(s)	327
AoxI	GGCC	4 cut(s)	36, 81, 527, 531
ApoI	RAATTY	1 cut(s)	337
Asp700I	GAANNNNTTC	1 cut(s)	612
AspLEI	GCGC	1 cut(s)	153
AspS9I	GGNCC	1 cut(s)	81
AsuC2I	CCSGG	1 cut(s)	203
AsuHPI	GGTGA	3 cut(s)	122, 169, 395
AvaI	CYCGRG	1 cut(s)	617
BaeGI	GKGCMC	1 cut(s)	512
BarI	GAAGNNNNNNTAC	2 cut(s)	152, 184
BbsI	GAAGAC	1 cut(s)	167
BccI	CCATC	3 cut(s)	416, 436, 532
BceAI	ACGGC	2 cut(s)	51, 422
BciT130I	CCWGG	1 cut(s)	629
BciVI	GTATCC	1 cut(s)	419
BcnI	CCSGG	1 cut(s)	203
BcoDI	GTCTC	1 cut(s)	234
BfaI	CTAG	1 cut(s)	176
BfuI	GTATCC	1 cut(s)	419
BisI	GCNGC	1 cut(s)	479
BlsI	GCNGC	1 cut(s)	480
Bme1390I	CCNGG	2 cut(s)	203, 629
BmeT110I	CYCGRG	1 cut(s)	617
BmgT120I	GGNCC	1 cut(s)	81
BmiI	GGNNCC	1 cut(s)	6
BmrFI	CCNGG	2 cut(s)	203, 629
BmsI	GCATC	1 cut(s)	361
BpiI	GAAGAC	1 cut(s)	167
Bpu10I	CCTNAGC	1 cut(s)	141
BpuEI	CTTGAG	1 cut(s)	216
BpuMI	CCSGG	1 cut(s)	203
BsaHI	GRCGYC	1 cut(s)	198
BsaI	GGTCTC	1 cut(s)	234
BsaWI	WCCGGW	2 cut(s)	19, 327
Bsc4I	CCNNNNNNNGG	3 cut(s)	178, 327, 517
Bse118I	RCCGGY	3 cut(s)	101, 529, 569
BseAI	TCCGGA	1 cut(s)	327
BseBI	CCWGG	1 cut(s)	629
BseGI	GGATG	2 cut(s)	376, 378
BseLI	CCNNNNNNNGG	3 cut(s)	178, 327, 517
BseMII	CTCAG	1 cut(s)	688
BseRI	GAGGAG	3 cut(s)	359, 537, 540
BseSI	GKGCMC	1 cut(s)	512
BseX3I	CGGCCG	1 cut(s)	531
BsgI	GTGCAG	1 cut(s)	84
Bsh1285I	CGRYCG	1 cut(s)	534
BshFI	GGCC	4 cut(s)	38, 83, 529, 533
BsiEI	CGRYCG	1 cut(s)	534
BsiHKCI	CYCGRG	1 cut(s)	617
BsiSI	CCGG	6 cut(s)	20, 102, 203, 328, 530, 570
BslFI	GGGAC	1 cut(s)	185
BslI	CCNNNNNNNGG	3 cut(s)	178, 327, 517
BsmAI	GTCTC	1 cut(s)	234
BsmFI	GGGAC	1 cut(s)	185
BsnI	GGCC	4 cut(s)	38, 83, 529, 533
Bso31I	GGTCTC	1 cut(s)	234
BsoBI	CYCGRG	1 cut(s)	617
Bsp1286I	GDGCHC	1 cut(s)	512
Bsp13I	TCCGGA	1 cut(s)	327
Bsp1407I	TGTACA	1 cut(s)	387
Bsp143I	GATC	2 cut(s)	252, 400
BspACI	CCGC	2 cut(s)	374, 479
BspANI	GGCC	4 cut(s)	38, 83, 529, 533
BspCNI	CTCAG	1 cut(s)	687
BspEI	TCCGGA	1 cut(s)	327
BspLI	GGNNCC	1 cut(s)	6
BspTNI	GGTCTC	1 cut(s)	234
BsrFI	RCCGGY	3 cut(s)	101, 529, 569
BsrGI	TGTACA	1 cut(s)	387
BssAI	RCCGGY	3 cut(s)	101, 529, 569
BssMI	GATC	2 cut(s)	252, 400
BssNI	GRCGYC	1 cut(s)	198
Bst2UI	CCWGG	1 cut(s)	629
Bst4CI	ACNGT	1 cut(s)	215
BstACI	GRCGYC	1 cut(s)	198
BstAUI	TGTACA	1 cut(s)	387
BstC8I	GCNNGC	4 cut(s)	67, 503, 531, 571
BstDEI	CTNAG	4 cut(s)	97, 141, 273, 674
BstF5I	GGATG	2 cut(s)	376, 378
BstHHI	GCGC	1 cut(s)	153
BstKTI	GATC	2 cut(s)	255, 403
BstMAI	GTCTC	1 cut(s)	234
BstMBI	GATC	2 cut(s)	252, 400
BstMCI	CGRYCG	1 cut(s)	534
BstMWI	GCNNNNNNNGC	1 cut(s)	507
BstNI	CCWGG	1 cut(s)	629
BstNSI	RCATGY	1 cut(s)	577
BstSCI	CCNGG	2 cut(s)	201, 627
BstSLI	GKGCMC	1 cut(s)	512
BstV2I	GAAGAC	1 cut(s)	167
BstZI	CGGCCG	1 cut(s)	531
BsuI	GTATCC	1 cut(s)	419
BsuRI	GGCC	4 cut(s)	38, 83, 529, 533
BtsCI	GGATG	2 cut(s)	376, 378
BtsI	GCAGTG	1 cut(s)	512
BtsIMutI	CAGTG	1 cut(s)	512
Cac8I	GCNNGC	4 cut(s)	67, 503, 531, 571
CfoI	GCGC	1 cut(s)	153
Cfr10I	RCCGGY	3 cut(s)	101, 529, 569
Cfr13I	GGNCC	1 cut(s)	81
Csp6I	GTAC	4 cut(s)	349, 388, 484, 559
CspCI	CAANNNNNGTGG	2 cut(s)	631, 666
CviAII	CATG	3 cut(s)	465, 525, 574
CviQI	GTAC	4 cut(s)	349, 388, 484, 559
DdeI	CTNAG	4 cut(s)	97, 141, 273, 674
DpnI	GATC	2 cut(s)	254, 402
DpnII	GATC	2 cut(s)	252, 400
EaeI	YGGCCR	3 cut(s)	36, 527, 531
EagI	CGGCCG	1 cut(s)	531
EclXI	CGGCCG	1 cut(s)	531
Eco31I	GGTCTC	1 cut(s)	234
Eco52I	CGGCCG	1 cut(s)	531
Eco57I	CTGAAG	1 cut(s)	33
Eco88I	CYCGRG	1 cut(s)	617
EcoO109I	RGGNCCY	1 cut(s)	81
EcoRII	CCWGG	1 cut(s)	627
FaeI	CATG	3 cut(s)	468, 528, 577
FaqI	GGGAC	1 cut(s)	185
FatI	CATG	3 cut(s)	464, 524, 573
Fnu4HI	GCNGC	1 cut(s)	479
FokI	GGATG	2 cut(s)	365, 383
FseI	GGCCGGCC	1 cut(s)	533
Fsp4HI	GCNGC	1 cut(s)	479
FspBI	CTAG	1 cut(s)	176
FspI	TGCGCA	1 cut(s)	152
GlaI	GCGC	1 cut(s)	152
GluI	GCNGC	1 cut(s)	479
HaeIII	GGCC	4 cut(s)	38, 83, 529, 533
HapII	CCGG	6 cut(s)	20, 102, 203, 328, 530, 570
HhaI	GCGC	1 cut(s)	153
Hin1I	GRCGYC	1 cut(s)	198
Hin1II	CATG	3 cut(s)	468, 528, 577
Hin6I	GCGC	1 cut(s)	151
HinP1I	GCGC	1 cut(s)	151
HinfI	GANTC	3 cut(s)	126, 469, 622
HpaII	CCGG	6 cut(s)	20, 102, 203, 328, 530, 570
HphI	GGTGA	3 cut(s)	122, 169, 395
Hpy166II	GTNNAC	3 cut(s)	33, 388, 458
Hpy188III	TCNNGA	6 cut(s)	52, 248, 328, 419, 617, 619
Hpy8I	GTNNAC	3 cut(s)	33, 388, 458
Hpy99I	CGWCG	1 cut(s)	559
HpyAV	CCTTC	1 cut(s)	623
HpyCH4III	ACNGT	1 cut(s)	215
HpyCH4IV	ACGT	3 cut(s)	56, 117, 198
HpyCH4V	TGCA	3 cut(s)	65, 185, 653
HpyF10VI	GCNNNNNNNGC	1 cut(s)	507
HpyF3I	CTNAG	4 cut(s)	97, 141, 273, 674
HpySE526I	ACGT	3 cut(s)	56, 117, 198
Hsp92I	GRCGYC	1 cut(s)	198
Hsp92II	CATG	3 cut(s)	468, 528, 577
HspAI	GCGC	1 cut(s)	151
Kpn2I	TCCGGA	1 cut(s)	327
KroI	GCCGGC	2 cut(s)	529, 569
KroNI	GCCGGC	2 cut(s)	531, 571
Kzo9I	GATC	2 cut(s)	252, 400
LmnI	GCTCC	2 cut(s)	10, 330
LweI	GCATC	1 cut(s)	361
MaeI	CTAG	1 cut(s)	176
MaeII	ACGT	3 cut(s)	56, 117, 198
MaeIII	GTNAC	4 cut(s)	88, 110, 470, 520
MalI	GATC	2 cut(s)	254, 402
MboI	GATC	2 cut(s)	252, 400
MboII	GAAGA	2 cut(s)	172, 218
MhlI	GDGCHC	1 cut(s)	512
MluCI	AATT	4 cut(s)	261, 337, 679, 693
MlyI	GAGTC	2 cut(s)	135, 478
MroI	TCCGGA	1 cut(s)	327
MroNI	GCCGGC	2 cut(s)	529, 569
MroXI	GAANNNNTTC	1 cut(s)	612
MseI	TTAA	1 cut(s)	736
MslI	CAYNNNNRTG	2 cut(s)	383, 578
MspI	CCGG	6 cut(s)	20, 102, 203, 328, 530, 570
MspR9I	CCNGG	2 cut(s)	203, 629
MvaI	CCWGG	1 cut(s)	629
MwoI	GCNNNNNNNGC	1 cut(s)	507
NaeI	GCCGGC	2 cut(s)	531, 571
NciI	CCSGG	1 cut(s)	203
NdeII	GATC	2 cut(s)	252, 400
NgoMIV	GCCGGC	2 cut(s)	529, 569
NlaIII	CATG	3 cut(s)	468, 528, 577
NlaIV	GGNNCC	1 cut(s)	6
NmeAIII	GCCGAG	1 cut(s)	559
NmuCI	GTSAC	3 cut(s)	88, 110, 470
NsbI	TGCGCA	1 cut(s)	152
NspI	RCATGY	1 cut(s)	577
PaeR7I	CTCGAG	1 cut(s)	617
PdiI	GCCGGC	2 cut(s)	531, 571
PdmI	GAANNNNTTC	1 cut(s)	612
PfeI	GAWTC	1 cut(s)	622
PflFI	GACNNNGTC	1 cut(s)	116
PfoI	TCCNGGA	1 cut(s)	201
PkrI	GCNGC	1 cut(s)	480
PleI	GAGTC	2 cut(s)	134, 477
PpsI	GAGTC	2 cut(s)	134, 477
Psp6I	CCWGG	1 cut(s)	627
PspGI	CCWGG	1 cut(s)	627
PspN4I	GGNNCC	1 cut(s)	6
PspPI	GGNCC	1 cut(s)	81
PsyI	GACNNNGTC	1 cut(s)	116
RigI	GGCCGGCC	1 cut(s)	533
RsaI	GTAC	4 cut(s)	350, 389, 485, 560
RsaNI	GTAC	4 cut(s)	349, 388, 484, 559
RseI	CAYNNNNRTG	2 cut(s)	383, 578
SaqAI	TTAA	1 cut(s)	736
SatI	GCNGC	1 cut(s)	479
Sau3AI	GATC	2 cut(s)	252, 400
Sau96I	GGNCC	1 cut(s)	81
SchI	GAGTC	2 cut(s)	135, 478
ScrFI	CCNGG	2 cut(s)	203, 629
SduI	GDGCHC	1 cut(s)	512
SfaNI	GCATC	1 cut(s)	361
Sfr274I	CTCGAG	1 cut(s)	617
SlaI	CTCGAG	1 cut(s)	617
SmiMI	CAYNNNNRTG	2 cut(s)	383, 578
SmlI	CTYRAG	2 cut(s)	231, 617
SmoI	CTYRAG	2 cut(s)	231, 617
Sse9I	AATT	4 cut(s)	261, 337, 679, 693
SsiI	CCGC	2 cut(s)	374, 479
SspI	AATATT	1 cut(s)	189
SspMI	CTAG	1 cut(s)	176
StyD4I	CCNGG	2 cut(s)	201, 627
TaaI	ACNGT	1 cut(s)	215
TaiI	ACGT	3 cut(s)	59, 120, 201
TaqI	TCGA	2 cut(s)	285, 618
TasI	AATT	4 cut(s)	261, 337, 679, 693
TatI	WGTACW	3 cut(s)	348, 387, 483
TauI	GCSGC	1 cut(s)	481
TfiI	GAWTC	1 cut(s)	622
Tru1I	TTAA	1 cut(s)	736
Tru9I	TTAA	1 cut(s)	736
TscAI	CASTG	1 cut(s)	512
TseFI	GTSAC	3 cut(s)	88, 110, 470
Tsp45I	GTSAC	3 cut(s)	88, 110, 470
TspDTI	ATGAA	1 cut(s)	704
TspGWI	ACGGA	1 cut(s)	543
TspRI	CASTG	1 cut(s)	512
Tth111I	GACNNNGTC	1 cut(s)	116
XapI	RAATTY	1 cut(s)	337
XceI	RCATGY	1 cut(s)	577
XhoI	CTCGAG	1 cut(s)	617
XmnI	GAANNNNTTC	1 cut(s)	612
XspI	CTAG	1 cut(s)	176
ZraI	GACGTC	1 cut(s)	199

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.