Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0032866.1

Orthogroup ID

OG0001700

Physical Location & Seq

Genomic Coordinates Reverse (-)

951 .. 2612

Gene Structure 1662 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0032866.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 951 bp

atgtgttccattgcaatggatgttcctactgtgaacttggctagcaaagcctatgttacttttttggcaggtaacaaagactatgtgaagggagttgtgggtttggccaagggcttgagaaaggtcaaatcccaatacccacttgttgtggcggtgcttccagatgtcccagtggagcaccggaagattctcgagtctcagggctgcattgtccgggacatcgagcctgtgtaccctccggaaaatcaccaagccgagtttgccatggcatattatgtcatcaactattcaaagcttcggattttcaattttgtggagtatagcaagatgatatacttggacggagacatacaagtctttgacaacattgatcacctctttcacctcccggatgggtatttctatgctgtcatggattgtttctgtgaaaaaacatggagtcacactcctcaaagtgagatcggatattgccaacaatgtccggaaaaggttcagtggcctgctgagttaggatctccacccgcaccttacttcaacgctggcatgttcgtctatgagcctaagctctccacttacaataacctattgacattcctcaaaaatactcctcccactccttttgctgagcaagacttgttgaacttcttctttagggatgtctacaagcctatcccttcagagtacaacttcattcttgccatgttatggcgacatcctgagaatgtaaagattgatgctctgaaagttgttcactattgtgctgcgggatcaaagccatggaggtatacaggacaggaggagaacatggaaagagaagacataaagatgctggtgaagaagtggtgggacatttacgatgacaggtcgttggatttgaagaaggtcccggttgctagcttgttagatccggtgattgaaggtgaagaaagaagtgctccttcggctgcctaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00052 map00052

Pfam Domains

Protein Families

Glyco_transf_8

Protein Analysis

316

Amino Acids

36.34

Weight (kDa)

5.45

Isoelectric Point (pI)

44.63

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001700)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G60450 AT1G60470
fragaria_vesca	FvH4_4g20790 FvH4_4g34160
malus_domestica	MD13G1093700.v1.1 MD13G1147700.v1.1 MD16G1095000.v1.1
prunus_persica	Prupe.1G111300_v2.0.a1 Prupe.1G251600_v2.0.a1 Prupe.8G258200_v2.0.a1
pyrus_communis	pycom13g08160 pycom13g12730 pycom16g08080 pycom16g08090 pycom16g12600
rosa_chinensis	RchiOBHm_Chr4g0426261 RchiOBHm_Chr4g0443671 RchiOBHm_Chr6g0293551
rosa_laevigata	RLG00000005903 RLG00000007308 RLG00000011942
rosa_multiflora	Rmu_co8279911.1_g000001 Rmu_sc0000730.1_g000037 Rmu_sc0001426.1_g000017 Rmu_sc0032866.1_g000001 Rmu_sc0036604.1_g000001
rosa_roxburghii	Rroxscaffold_5G00368270 Rroxscaffold_5G00384220
rosa_rugosa	Rorug04G0209900 Rorug06G0236400
rosa_samantha	Rh4AG266800 Rh4AG406100 Rh4BG272700 Rh4BG417100 Rh4CG286100 Rh4CG286400 Rh4CG431600 Rh4DG269100 Rh4DG269300 Rh4DG412700 Rh6AG349100 Rh6BG356500 Rh6CG363200 Rh6DG350100
rosa_wichuraiana	Rw4G023060 Rw4G023080 Rw4G034870 Rw6G030370

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	353
Acc36I	ACCTGC	1 cut(s)	59
AccB7I	CCANNNNNTGG	1 cut(s)	705
AccI	GTMKAC	2 cut(s)	660, 785
AccIII	TCCGGA	2 cut(s)	238, 481
AciI	CCGC	3 cut(s)	152, 522, 764
AclWI	GGATC	3 cut(s)	520, 775, 899
AcoI	YGGCCR	1 cut(s)	105
AcuI	CTGAAG	1 cut(s)	660
AfaI	GTAC	2 cut(s)	233, 683
AfiI	CCNNNNNNNGG	1 cut(s)	705
AgsI	TTSAA	6 cut(s)	291, 307, 535, 640, 877, 917
AleI	CACNNNNGTG	1 cut(s)	756
AluBI	AGCT	3 cut(s)	295, 565, 897
AluI	AGCT	3 cut(s)	295, 565, 897
Alw21I	GWGCWC	2 cut(s)	180, 937
Alw26I	GTCTC	2 cut(s)	201, 339
AlwI	GGATC	3 cut(s)	520, 775, 899
Ama87I	CYCGRG	1 cut(s)	191
Aor13HI	TCCGGA	2 cut(s)	238, 481
AoxI	GGCC	2 cut(s)	105, 497
ApeKI	GCWGC	3 cut(s)	204, 761, 944
Asp700I	GAANNNNTTC	2 cut(s)	489, 644
AspS9I	GGNCC	1 cut(s)	883
AsuC2I	CCSGG	3 cut(s)	215, 389, 887
AsuHPI	GGTGA	6 cut(s)	239, 365, 374, 844, 922, 932
AsuNHI	GCTAGC	2 cut(s)	41, 893
AvaI	CYCGRG	1 cut(s)	191
AvaII	GGWCC	1 cut(s)	883
BalI	TGGCCA	1 cut(s)	107
BbsI	GAAGAC	1 cut(s)	822
Bbv12I	GWGCWC	2 cut(s)	180, 937
BbvI	GCAGC	3 cut(s)	191, 748, 931
BccI	CCATC	1 cut(s)	386
BclI	TGATCA	1 cut(s)	370
BcnI	CCSGG	3 cut(s)	215, 389, 887
BcoDI	GTCTC	2 cut(s)	201, 339
BfaI	CTAG	2 cut(s)	42, 894
BfuAI	ACCTGC	1 cut(s)	59
BisI	GCNGC	3 cut(s)	205, 762, 945
BlpI	GCTNAGC	1 cut(s)	624
BlsI	GCNGC	3 cut(s)	206, 763, 946
Bme1390I	CCNGG	3 cut(s)	215, 389, 887
Bme18I	GGWCC	1 cut(s)	883
BmeT110I	CYCGRG	1 cut(s)	191
BmgT120I	GGNCC	1 cut(s)	883
BmiI	GGNNCC	1 cut(s)	885
BmrFI	CCNGG	3 cut(s)	215, 389, 887
BmrI	ACTGGG	1 cut(s)	164
BmsI	GCATC	2 cut(s)	724, 816
BmtI	GCTAGC	2 cut(s)	45, 897
BmuI	ACTGGG	1 cut(s)	164
BpiI	GAAGAC	1 cut(s)	822
BplI	GAGNNNNNCTC	2 cut(s)	430, 462
Bpu10I	CCTNAGC	1 cut(s)	561
Bpu1102I	GCTNAGC	1 cut(s)	624
BpuEI	CTTGAG	1 cut(s)	136
BpuMI	CCSGG	3 cut(s)	215, 389, 887
BsaJI	CCNNGG	3 cut(s)	108, 264, 776
BsaWI	WCCGGW	4 cut(s)	180, 238, 481, 907
Bsc4I	CCNNNNNNNGG	1 cut(s)	705
Bse1I	ACTGG	1 cut(s)	170
Bse3DI	GCAATG	2 cut(s)	9, 21
BseAI	TCCGGA	2 cut(s)	238, 481
BseDI	CCNNGG	3 cut(s)	108, 264, 776
BseGI	GGATG	4 cut(s)	25, 397, 661, 712
BseLI	CCNNNNNNNGG	1 cut(s)	705
BseMI	GCAATG	2 cut(s)	9, 21
BseMII	CTCAG	4 cut(s)	212, 495, 615, 708
BseNI	ACTGG	1 cut(s)	170
BseRI	GAGGAG	3 cut(s)	438, 597, 812
BseXI	GCAGC	3 cut(s)	191, 748, 931
BshFI	GGCC	2 cut(s)	107, 499
BsiHKAI	GWGCWC	2 cut(s)	180, 937
BsiHKCI	CYCGRG	1 cut(s)	191
BsiSI	CCGG	7 cut(s)	181, 214, 239, 389, 482, 887, 908
BslFI	GGGAC	4 cut(s)	152, 230, 860, 869
BslI	CCNNNNNNNGG	1 cut(s)	705
BsmAI	GTCTC	2 cut(s)	201, 339
BsmFI	GGGAC	4 cut(s)	152, 230, 860, 869
BsnI	GGCC	2 cut(s)	107, 499
BsoBI	CYCGRG	1 cut(s)	191
Bsp1286I	GDGCHC	2 cut(s)	180, 937
Bsp13I	TCCGGA	2 cut(s)	238, 481
Bsp143I	GATC	5 cut(s)	370, 459, 512, 767, 904
Bsp1720I	GCTNAGC	1 cut(s)	624
Bsp19I	CCATGG	2 cut(s)	264, 776
BspACI	CCGC	3 cut(s)	152, 522, 764
BspANI	GGCC	2 cut(s)	107, 499
BspCNI	CTCAG	4 cut(s)	211, 496, 616, 709
BspEI	TCCGGA	2 cut(s)	238, 481
BspLI	GGNNCC	1 cut(s)	885
BspMI	ACCTGC	1 cut(s)	59
BspOI	GCTAGC	2 cut(s)	45, 897
BspPI	GGATC	3 cut(s)	520, 775, 899
BsrDI	GCAATG	2 cut(s)	9, 21
BsrI	ACTGG	1 cut(s)	170
BssECI	CCNNGG	3 cut(s)	108, 264, 776
BssMI	GATC	5 cut(s)	370, 459, 512, 767, 904
BssNAI	GTATAC	1 cut(s)	786
BssT1I	CCWWGG	3 cut(s)	108, 264, 776
Bst1107I	GTATAC	1 cut(s)	786
Bst4CI	ACNGT	1 cut(s)	31
BstC8I	GCNNGC	4 cut(s)	43, 501, 541, 895
BstDEI	CTNAG	5 cut(s)	198, 504, 561, 624, 717
BstDSI	CCRYGG	2 cut(s)	264, 776
BstF5I	GGATG	4 cut(s)	25, 397, 661, 712
BstKTI	GATC	5 cut(s)	373, 462, 515, 770, 907
BstMAI	GTCTC	2 cut(s)	201, 339
BstMBI	GATC	5 cut(s)	370, 459, 512, 767, 904
BstMWI	GCNNNNNNNGC	3 cut(s)	47, 260, 941
BstNSI	RCATGY	1 cut(s)	547
BstSCI	CCNGG	3 cut(s)	213, 387, 885
BstV1I	GCAGC	3 cut(s)	191, 748, 931
BstV2I	GAAGAC	1 cut(s)	822
BstX2I	RGATCY	2 cut(s)	512, 904
BstXI	CCANNNNNNTGG	1 cut(s)	16
BstYI	RGATCY	2 cut(s)	512, 904
BstZ17I	GTATAC	1 cut(s)	786
BsuRI	GGCC	2 cut(s)	107, 499
BtgI	CCRYGG	2 cut(s)	264, 776
BtsCI	GGATG	4 cut(s)	25, 397, 661, 712
BtsIMutI	CAGTG	2 cut(s)	177, 500
BveI	ACCTGC	1 cut(s)	59
Cac8I	GCNNGC	4 cut(s)	43, 501, 541, 895
Cfr13I	GGNCC	1 cut(s)	883
Csp6I	GTAC	2 cut(s)	232, 682
CspCI	CAANNNNNGTGG	2 cut(s)	601, 636
CviAII	CATG	7 cut(s)	265, 412, 435, 544, 700, 777, 805
CviQI	GTAC	2 cut(s)	232, 682
DdeI	CTNAG	5 cut(s)	198, 504, 561, 624, 717
DpnI	GATC	5 cut(s)	372, 461, 514, 769, 906
DpnII	GATC	5 cut(s)	370, 459, 512, 767, 904
DrdI	GACNNNNNNGTC	1 cut(s)	353
DseDI	GACNNNNNNGTC	1 cut(s)	353
EaeI	YGGCCR	1 cut(s)	105
Eco130I	CCWWGG	3 cut(s)	108, 264, 776
Eco47I	GGWCC	1 cut(s)	883
Eco57I	CTGAAG	1 cut(s)	660
Eco88I	CYCGRG	1 cut(s)	191
EcoO109I	RGGNCCY	1 cut(s)	883
EcoT14I	CCWWGG	3 cut(s)	108, 264, 776
ErhI	CCWWGG	3 cut(s)	108, 264, 776
FaeI	CATG	7 cut(s)	268, 415, 438, 547, 703, 780, 808
FalI	AAGNNNNNCTT	1 cut(s)	922
FaqI	GGGAC	4 cut(s)	152, 230, 860, 869
FatI	CATG	7 cut(s)	264, 411, 434, 543, 699, 776, 804
FauI	CCCGC	2 cut(s)	529, 757
FbaI	TGATCA	1 cut(s)	370
FblI	GTMKAC	2 cut(s)	660, 785
Fnu4HI	GCNGC	3 cut(s)	205, 762, 945
FokI	GGATG	4 cut(s)	32, 404, 668, 699
Fsp4HI	GCNGC	3 cut(s)	205, 762, 945
FspBI	CTAG	2 cut(s)	42, 894
GluI	GCNGC	3 cut(s)	205, 762, 945
HaeIII	GGCC	2 cut(s)	107, 499
HapII	CCGG	7 cut(s)	181, 214, 239, 389, 482, 887, 908
Hin1II	CATG	7 cut(s)	268, 415, 438, 547, 703, 780, 808
HindIII	AAGCTT	1 cut(s)	293
HinfI	GANTC	3 cut(s)	187, 194, 439
HpaII	CCGG	7 cut(s)	181, 214, 239, 389, 482, 887, 908
HphI	GGTGA	6 cut(s)	239, 365, 374, 844, 922, 932
Hpy166II	GTNNAC	5 cut(s)	34, 232, 661, 751, 786
Hpy188I	TCNGA	4 cut(s)	300, 464, 679, 741
Hpy188III	TCNNGA	5 cut(s)	161, 191, 239, 482, 716
Hpy8I	GTNNAC	5 cut(s)	34, 232, 661, 751, 786
HpyAV	CCTTC	5 cut(s)	82, 684, 874, 911, 948
HpyCH4III	ACNGT	1 cut(s)	31
HpyCH4V	TGCA	2 cut(s)	14, 207
HpyF10VI	GCNNNNNNNGC	3 cut(s)	47, 260, 941
HpyF3I	CTNAG	5 cut(s)	198, 504, 561, 624, 717
Hsp92II	CATG	7 cut(s)	268, 415, 438, 547, 703, 780, 808
Kpn2I	TCCGGA	2 cut(s)	238, 481
Ksp22I	TGATCA	1 cut(s)	370
Kzo9I	GATC	5 cut(s)	370, 459, 512, 767, 904
LmnI	GCTCC	2 cut(s)	175, 940
Lsp1109I	GCAGC	3 cut(s)	191, 748, 931
LweI	GCATC	2 cut(s)	724, 816
MaeI	CTAG	2 cut(s)	42, 894
MaeIII	GTNAC	3 cut(s)	55, 71, 440
MalI	GATC	5 cut(s)	372, 461, 514, 769, 906
MboI	GATC	5 cut(s)	370, 459, 512, 767, 904
MboII	GAAGA	6 cut(s)	196, 637, 827, 847, 889, 935
MflI	RGATCY	2 cut(s)	512, 904
MhlI	GDGCHC	2 cut(s)	180, 937
MlsI	TGGCCA	1 cut(s)	107
MluCI	AATT	1 cut(s)	307
MluNI	TGGCCA	1 cut(s)	107
MlyI	GAGTC	2 cut(s)	203, 448
MmeI	TCCRAC	1 cut(s)	849
MnlI	CCTC	8 cut(s)	246, 386, 395, 459, 605, 618, 774, 790
Mox20I	TGGCCA	1 cut(s)	107
MroI	TCCGGA	2 cut(s)	238, 481
MroXI	GAANNNNTTC	2 cut(s)	489, 644
MscI	TGGCCA	1 cut(s)	107
MslI	CAYNNNNRTG	3 cut(s)	14, 756, 824
Msp20I	TGGCCA	1 cut(s)	107
MspI	CCGG	7 cut(s)	181, 214, 239, 389, 482, 887, 908
MspR9I	CCNGG	3 cut(s)	215, 389, 887
MwoI	GCNNNNNNNGC	3 cut(s)	47, 260, 941
NciI	CCSGG	3 cut(s)	215, 389, 887
NcoI	CCATGG	2 cut(s)	264, 776
NdeII	GATC	5 cut(s)	370, 459, 512, 767, 904
NheI	GCTAGC	2 cut(s)	41, 893
NlaIII	CATG	7 cut(s)	268, 415, 438, 547, 703, 780, 808
NlaIV	GGNNCC	1 cut(s)	885
NmeAIII	GCCGAG	1 cut(s)	280
NmuCI	GTSAC	1 cut(s)	440
NspI	RCATGY	1 cut(s)	547
OliI	CACNNNNGTG	1 cut(s)	756
PaeR7I	CTCGAG	1 cut(s)	191
PdmI	GAANNNNTTC	2 cut(s)	489, 644
PfeI	GAWTC	1 cut(s)	187
PflMI	CCANNNNNTGG	1 cut(s)	705
PfoI	TCCNGGA	2 cut(s)	213, 387
PkrI	GCNGC	3 cut(s)	206, 763, 946
PleI	GAGTC	2 cut(s)	202, 447
PpsI	GAGTC	2 cut(s)	202, 447
PpuMI	RGGWCCY	1 cut(s)	883
Psp5II	RGGWCCY	1 cut(s)	883
PspN4I	GGNNCC	1 cut(s)	885
PspPI	GGNCC	1 cut(s)	883
PspPPI	RGGWCCY	1 cut(s)	883
PsuI	RGATCY	2 cut(s)	512, 904
RsaI	GTAC	2 cut(s)	233, 683
RsaNI	GTAC	2 cut(s)	232, 682
RseI	CAYNNNNRTG	3 cut(s)	14, 756, 824
SatI	GCNGC	3 cut(s)	205, 762, 945
Sau3AI	GATC	5 cut(s)	370, 459, 512, 767, 904
Sau96I	GGNCC	1 cut(s)	883
SchI	GAGTC	2 cut(s)	203, 448
ScrFI	CCNGG	3 cut(s)	215, 389, 887
SduI	GDGCHC	2 cut(s)	180, 937
SfaNI	GCATC	2 cut(s)	724, 816
Sfr274I	CTCGAG	1 cut(s)	191
SinI	GGWCC	1 cut(s)	883
SlaI	CTCGAG	1 cut(s)	191
SmiMI	CAYNNNNRTG	3 cut(s)	14, 756, 824
SmlI	CTYRAG	2 cut(s)	115, 191
SmoI	CTYRAG	2 cut(s)	115, 191
Sse9I	AATT	1 cut(s)	307
SsiI	CCGC	3 cut(s)	152, 522, 764
SspMI	CTAG	2 cut(s)	42, 894
StyD4I	CCNGG	3 cut(s)	213, 387, 885
StyI	CCWWGG	3 cut(s)	108, 264, 776
TaaI	ACNGT	1 cut(s)	31
TaqI	TCGA	2 cut(s)	192, 222
TasI	AATT	1 cut(s)	307
TatI	WGTACW	1 cut(s)	681
TfiI	GAWTC	1 cut(s)	187
TscAI	CASTG	2 cut(s)	177, 500
TseFI	GTSAC	1 cut(s)	440
TseI	GCWGC	3 cut(s)	204, 761, 944
Tsp45I	GTSAC	1 cut(s)	440
TspDTI	ATGAA	1 cut(s)	679
TspGWI	ACGGA	1 cut(s)	357
TspRI	CASTG	2 cut(s)	177, 500
Van91I	CCANNNNNTGG	1 cut(s)	705
VpaK11BI	GGWCC	1 cut(s)	883
XceI	RCATGY	1 cut(s)	547
XhoI	CTCGAG	1 cut(s)	191
XmiI	GTMKAC	2 cut(s)	660, 785
XmnI	GAANNNNTTC	2 cut(s)	489, 644
XspI	CTAG	2 cut(s)	42, 894

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.