Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr6

Orthogroup ID

OG0001700

Physical Location & Seq

Genomic Coordinates Reverse (-)

54566745 .. 54570937

Gene Structure 4193 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw6G030370.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1086 bp

ATGGATGTTCCTACTGTGAACTTGGCTAGCAAAGCCTATGTTACTTTTTTGGCAGGCAACAAAGACTATGTGAAGGGAGTTGTGGGTTTGGCCAAGGGCTTGAGAAAGGCCAAATCCCAATACCCACTTGTTGTGGCGGTGCTTCCAGATGTCCCAGTGGAGCACCGGAAGATTCTCGAGTCTCAGGGCTGCATTGTCCGGGACATCGAGCCTGTGTACCCTCCGGAAAATCACCAAGCCGAGTTTGCCATGGCATATTATGTCATCAACTATTCAAAGCTTCGGATTTTCAATTTTGTGGAGTATAGCAAGATGATATACTTGGACGGAGACATACAAGTCTTTGACAACATTGATCACCTCTTTCACCTCCCGGATGGGTATTTCTATGCTGTCATGGATTGTTTCTGTGAAAAAACATGGAGTCACACTCCTCAAAGTGAGATCGGATATTGCCAACAATGTCCGGAAAAGGTTCAGTGGCCTGCTGAGTTAGGATCTCCACCCGCACCTTACTTCAACGCTGGCATGTTCGTCTATGAGCCTAAGCTCTCCACTTACAATAACCTATTGACATTCCTCAAAAATACTCCTCCCACTCCTTTTGCTGAGCAAGACTTGTTGAACTTCTTCTTTTGGGATGTCTACAAGCCTATCCCTTCAGAGTACAACTTCATTCTTGCCATGTTATGGCGACATCCTGAGAATGTAAAGATTGATGCTCTGAAAGTTGTTCACTATTGTGCTGCGGGATCAAAGCCATGGAGGTATACAGGAGAGGAGGAGAACATGGAAAGAGAAGACATAAAGATGCTGGTGAAGAAGTGGTGGGACATTTACGATGACAGGTCGTTGGATTTGAAGAAGAGCACTGCTGATATGTCTGCTTTTGTGCAAAATCTGCTTCAACAGATGCAAACTAGGTTCCAATCGATGTCTGACAACATTATGGGAAACCGCATTAACGAGTTGGAACGTAGCATCGGTGACCTAAGAACAGAGATGGGAATCGAAGGCTCTCCATCTCCCGCCCCCCAGTCCAAGTCTGATGAAGATGGAGGGAAGCAAGATGAAGGTTCAGCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00052 map00052

Pfam Domains

Protein Families

Glyco_transf_8

Protein Analysis

361

Amino Acids

41.45

Weight (kDa)

5.08

Isoelectric Point (pI)

51.73

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Glyco_transf_8	PF01501	15 - 258	2e-45	Glycosyl transferase family 8
HSBP1	PF06825	293 - 334	1.7e-13	Heat shock factor binding protein 1

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001700)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G60450 AT1G60470
fragaria_vesca	FvH4_4g20790 FvH4_4g34160
malus_domestica	MD13G1093700.v1.1 MD13G1147700.v1.1 MD16G1095000.v1.1
prunus_persica	Prupe.1G111300_v2.0.a1 Prupe.1G251600_v2.0.a1 Prupe.8G258200_v2.0.a1
pyrus_communis	pycom13g08160 pycom13g12730 pycom16g08080 pycom16g08090 pycom16g12600
rosa_chinensis	RchiOBHm_Chr4g0426261 RchiOBHm_Chr4g0443671 RchiOBHm_Chr6g0293551
rosa_laevigata	RLG00000005903 RLG00000007308 RLG00000011942
rosa_multiflora	Rmu_co8279911.1_g000001 Rmu_sc0000730.1_g000037 Rmu_sc0001426.1_g000017 Rmu_sc0032866.1_g000001 Rmu_sc0036604.1_g000001
rosa_roxburghii	Rroxscaffold_5G00368270 Rroxscaffold_5G00384220
rosa_rugosa	Rorug04G0209900 Rorug06G0236400
rosa_samantha	Rh4AG266800 Rh4AG406100 Rh4BG272700 Rh4BG417100 Rh4CG286100 Rh4CG286400 Rh4CG431600 Rh4DG269100 Rh4DG269300 Rh4DG412700 Rh6AG349100 Rh6BG356500 Rh6CG363200 Rh6DG350100
rosa_wichuraiana	Rw4G023060 Rw4G023080 Rw4G034870 Rw6G030370

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	338
AccB7I	CCANNNNNTGG	1 cut(s)	690
AccI	GTMKAC	2 cut(s)	645, 770
AccIII	TCCGGA	2 cut(s)	223, 466
AciI	CCGC	5 cut(s)	137, 507, 749, 958, 1029
AclWI	GGATC	2 cut(s)	505, 760
AcoI	YGGCCR	1 cut(s)	90
AcuI	CTGAAG	1 cut(s)	645
AfaI	GTAC	2 cut(s)	218, 668
AfiI	CCNNNNNNNGG	1 cut(s)	690
AgsI	TTSAA	6 cut(s)	276, 292, 520, 625, 862, 908
AleI	CACNNNNGTG	1 cut(s)	741
AluBI	AGCT	2 cut(s)	280, 550
AluI	AGCT	2 cut(s)	280, 550
Alw21I	GWGCWC	2 cut(s)	165, 872
Alw26I	GTCTC	2 cut(s)	186, 324
AlwI	GGATC	2 cut(s)	505, 760
Ama87I	CYCGRG	1 cut(s)	176
Aor13HI	TCCGGA	2 cut(s)	223, 466
AoxI	GGCC	3 cut(s)	90, 108, 482
ApeKI	GCWGC	2 cut(s)	189, 746
Asp700I	GAANNNNTTC	2 cut(s)	474, 629
AsuC2I	CCSGG	2 cut(s)	200, 374
AsuHPI	GGTGA	5 cut(s)	224, 350, 359, 829, 998
AsuNHI	GCTAGC	1 cut(s)	26
AvaI	CYCGRG	1 cut(s)	176
BalI	TGGCCA	1 cut(s)	92
BbsI	GAAGAC	1 cut(s)	807
Bbv12I	GWGCWC	2 cut(s)	165, 872
BbvI	GCAGC	2 cut(s)	176, 733
BccI	CCATC	4 cut(s)	371, 997, 1030, 1049
BclI	TGATCA	1 cut(s)	355
BcnI	CCSGG	2 cut(s)	200, 374
BcoDI	GTCTC	2 cut(s)	186, 324
BfaI	CTAG	2 cut(s)	27, 921
BisI	GCNGC	2 cut(s)	190, 747
BlpI	GCTNAGC	1 cut(s)	609
BlsI	GCNGC	2 cut(s)	191, 748
Bme1390I	CCNGG	2 cut(s)	200, 374
BmeT110I	CYCGRG	1 cut(s)	176
BmiI	GGNNCC	1 cut(s)	926
BmrFI	CCNGG	2 cut(s)	200, 374
BmrI	ACTGGG	2 cut(s)	149, 1030
BmsI	GCATC	4 cut(s)	709, 801, 903, 990
BmtI	GCTAGC	1 cut(s)	30
BmuI	ACTGGG	2 cut(s)	149, 1030
BpiI	GAAGAC	1 cut(s)	807
BplI	GAGNNNNNCTC	2 cut(s)	415, 447
Bpu10I	CCTNAGC	1 cut(s)	546
Bpu1102I	GCTNAGC	1 cut(s)	609
BpuEI	CTTGAG	1 cut(s)	121
BpuMI	CCSGG	2 cut(s)	200, 374
Bsa29I	ATCGAT	1 cut(s)	932
BsaBI	GATNNNNATC	1 cut(s)	1007
BsaJI	CCNNGG	3 cut(s)	93, 249, 761
BsaWI	WCCGGW	3 cut(s)	165, 223, 466
Bsc4I	CCNNNNNNNGG	1 cut(s)	690
Bse1I	ACTGG	2 cut(s)	155, 1036
Bse8I	GATNNNNATC	1 cut(s)	1007
BseAI	TCCGGA	2 cut(s)	223, 466
BseCI	ATCGAT	1 cut(s)	932
BseDI	CCNNGG	3 cut(s)	93, 249, 761
BseGI	GGATG	4 cut(s)	10, 382, 646, 697
BseJI	GATNNNNATC	1 cut(s)	1007
BseLI	CCNNNNNNNGG	1 cut(s)	690
BseMII	CTCAG	4 cut(s)	197, 480, 600, 693
BseNI	ACTGG	2 cut(s)	155, 1036
BseRI	GAGGAG	4 cut(s)	423, 582, 794, 797
BseXI	GCAGC	2 cut(s)	176, 733
BshFI	GGCC	3 cut(s)	92, 110, 484
BshVI	ATCGAT	1 cut(s)	932
BsiHKAI	GWGCWC	2 cut(s)	165, 872
BsiHKCI	CYCGRG	1 cut(s)	176
BsiSI	CCGG	5 cut(s)	166, 199, 224, 374, 467
BslFI	GGGAC	3 cut(s)	137, 215, 845
BslI	CCNNNNNNNGG	1 cut(s)	690
BsmAI	GTCTC	2 cut(s)	186, 324
BsmFI	GGGAC	3 cut(s)	137, 215, 845
BsnI	GGCC	3 cut(s)	92, 110, 484
BsoBI	CYCGRG	1 cut(s)	176
Bsp1286I	GDGCHC	2 cut(s)	165, 872
Bsp13I	TCCGGA	2 cut(s)	223, 466
Bsp143I	GATC	4 cut(s)	355, 444, 497, 752
Bsp1720I	GCTNAGC	1 cut(s)	609
Bsp19I	CCATGG	2 cut(s)	249, 761
BspACI	CCGC	5 cut(s)	137, 507, 749, 958, 1029
BspANI	GGCC	3 cut(s)	92, 110, 484
BspCNI	CTCAG	4 cut(s)	196, 481, 601, 694
BspDI	ATCGAT	1 cut(s)	932
BspEI	TCCGGA	2 cut(s)	223, 466
BspLI	GGNNCC	1 cut(s)	926
BspOI	GCTAGC	1 cut(s)	30
BspPI	GGATC	2 cut(s)	505, 760
BspQI	GCTCTTC	1 cut(s)	860
BsrI	ACTGG	2 cut(s)	155, 1036
BssECI	CCNNGG	3 cut(s)	93, 249, 761
BssMI	GATC	4 cut(s)	355, 444, 497, 752
BssNAI	GTATAC	1 cut(s)	771
BssT1I	CCWWGG	3 cut(s)	93, 249, 761
Bst1107I	GTATAC	1 cut(s)	771
Bst4CI	ACNGT	1 cut(s)	16
Bst6I	CTCTTC	1 cut(s)	860
BstAPI	GCANNNNNTGC	1 cut(s)	901
BstC8I	GCNNGC	4 cut(s)	28, 55, 486, 526
BstDEI	CTNAG	6 cut(s)	183, 489, 546, 609, 702, 992
BstDSI	CCRYGG	2 cut(s)	249, 761
BstEII	GGTNACC	1 cut(s)	986
BstF5I	GGATG	4 cut(s)	10, 382, 646, 697
BstKTI	GATC	4 cut(s)	358, 447, 500, 755
BstMAI	GTCTC	2 cut(s)	186, 324
BstMBI	GATC	4 cut(s)	355, 444, 497, 752
BstMWI	GCNNNNNNNGC	3 cut(s)	32, 245, 901
BstNSI	RCATGY	1 cut(s)	532
BstPI	GGTNACC	1 cut(s)	986
BstSCI	CCNGG	2 cut(s)	198, 372
BstV1I	GCAGC	2 cut(s)	176, 733
BstV2I	GAAGAC	1 cut(s)	807
BstX2I	RGATCY	1 cut(s)	497
BstYI	RGATCY	1 cut(s)	497
BstZ17I	GTATAC	1 cut(s)	771
Bsu15I	ATCGAT	1 cut(s)	932
BsuRI	GGCC	3 cut(s)	92, 110, 484
BsuTUI	ATCGAT	1 cut(s)	932
BtgI	CCRYGG	2 cut(s)	249, 761
BtsCI	GGATG	4 cut(s)	10, 382, 646, 697
BtsI	GCAGTG	1 cut(s)	870
BtsIMutI	CAGTG	3 cut(s)	162, 485, 870
Cac8I	GCNNGC	4 cut(s)	28, 55, 486, 526
ClaI	ATCGAT	1 cut(s)	932
Csp6I	GTAC	2 cut(s)	217, 667
CspCI	CAANNNNNGTGG	2 cut(s)	586, 621
CviAII	CATG	8 cut(s)	250, 397, 420, 529, 685, 762, 790, 1083
CviQI	GTAC	2 cut(s)	217, 667
DdeI	CTNAG	6 cut(s)	183, 489, 546, 609, 702, 992
DpnI	GATC	4 cut(s)	357, 446, 499, 754
DpnII	GATC	4 cut(s)	355, 444, 497, 752
DrdI	GACNNNNNNGTC	1 cut(s)	338
DseDI	GACNNNNNNGTC	1 cut(s)	338
EaeI	YGGCCR	1 cut(s)	90
Eam1104I	CTCTTC	1 cut(s)	860
EarI	CTCTTC	1 cut(s)	860
Eco130I	CCWWGG	3 cut(s)	93, 249, 761
Eco57I	CTGAAG	1 cut(s)	645
Eco88I	CYCGRG	1 cut(s)	176
Eco91I	GGTNACC	1 cut(s)	986
EcoO65I	GGTNACC	1 cut(s)	986
EcoT14I	CCWWGG	3 cut(s)	93, 249, 761
ErhI	CCWWGG	3 cut(s)	93, 249, 761
FaeI	CATG	8 cut(s)	253, 400, 423, 532, 688, 765, 793, 1086
FaqI	GGGAC	3 cut(s)	137, 215, 845
FatI	CATG	8 cut(s)	249, 396, 419, 528, 684, 761, 789, 1082
FauI	CCCGC	3 cut(s)	514, 742, 1036
FbaI	TGATCA	1 cut(s)	355
FblI	GTMKAC	2 cut(s)	645, 770
Fnu4HI	GCNGC	2 cut(s)	190, 747
FokI	GGATG	4 cut(s)	17, 389, 653, 684
Fsp4HI	GCNGC	2 cut(s)	190, 747
FspBI	CTAG	2 cut(s)	27, 921
GluI	GCNGC	2 cut(s)	190, 747
HaeIII	GGCC	3 cut(s)	92, 110, 484
HapII	CCGG	5 cut(s)	166, 199, 224, 374, 467
Hin1II	CATG	8 cut(s)	253, 400, 423, 532, 688, 765, 793, 1086
HindIII	AAGCTT	1 cut(s)	278
HinfI	GANTC	4 cut(s)	172, 179, 424, 1008
HpaII	CCGG	5 cut(s)	166, 199, 224, 374, 467
HphI	GGTGA	5 cut(s)	224, 350, 359, 829, 998
Hpy166II	GTNNAC	5 cut(s)	19, 217, 646, 736, 771
Hpy188I	TCNGA	6 cut(s)	285, 449, 664, 726, 940, 1048
Hpy188III	TCNNGA	5 cut(s)	146, 176, 224, 467, 701
Hpy8I	GTNNAC	5 cut(s)	19, 217, 646, 736, 771
HpyAV	CCTTC	4 cut(s)	67, 669, 1007, 1067
HpyCH4III	ACNGT	1 cut(s)	16
HpyCH4IV	ACGT	1 cut(s)	976
HpyCH4V	TGCA	3 cut(s)	192, 895, 916
HpyF10VI	GCNNNNNNNGC	3 cut(s)	32, 245, 901
HpyF3I	CTNAG	6 cut(s)	183, 489, 546, 609, 702, 992
HpySE526I	ACGT	1 cut(s)	976
Hsp92II	CATG	8 cut(s)	253, 400, 423, 532, 688, 765, 793, 1086
Kpn2I	TCCGGA	2 cut(s)	223, 466
Ksp22I	TGATCA	1 cut(s)	355
Kzo9I	GATC	4 cut(s)	355, 444, 497, 752
LguI	GCTCTTC	1 cut(s)	860
LmnI	GCTCC	1 cut(s)	160
Lsp1109I	GCAGC	2 cut(s)	176, 733
LweI	GCATC	4 cut(s)	709, 801, 903, 990
MaeI	CTAG	2 cut(s)	27, 921
MaeII	ACGT	1 cut(s)	976
MaeIII	GTNAC	3 cut(s)	40, 425, 986
MalI	GATC	4 cut(s)	357, 446, 499, 754
MboI	GATC	4 cut(s)	355, 444, 497, 752
MboII	GAAGA	7 cut(s)	181, 622, 812, 832, 874, 877, 1064
MflI	RGATCY	1 cut(s)	497
MhlI	GDGCHC	2 cut(s)	165, 872
MlsI	TGGCCA	1 cut(s)	92
MluCI	AATT	1 cut(s)	292
MluNI	TGGCCA	1 cut(s)	92
MlyI	GAGTC	2 cut(s)	188, 433
MmeI	TCCRAC	2 cut(s)	834, 951
Mox20I	TGGCCA	1 cut(s)	92
MroI	TCCGGA	2 cut(s)	223, 466
MroXI	GAANNNNTTC	2 cut(s)	474, 629
MscI	TGGCCA	1 cut(s)	92
MseI	TTAA	1 cut(s)	963
MslI	CAYNNNNRTG	2 cut(s)	741, 809
Msp20I	TGGCCA	1 cut(s)	92
MspI	CCGG	5 cut(s)	166, 199, 224, 374, 467
MspR9I	CCNGG	2 cut(s)	200, 374
MwoI	GCNNNNNNNGC	3 cut(s)	32, 245, 901
NciI	CCSGG	2 cut(s)	200, 374
NcoI	CCATGG	2 cut(s)	249, 761
NdeII	GATC	4 cut(s)	355, 444, 497, 752
NheI	GCTAGC	1 cut(s)	26
NlaIII	CATG	8 cut(s)	253, 400, 423, 532, 688, 765, 793, 1086
NlaIV	GGNNCC	1 cut(s)	926
NmeAIII	GCCGAG	1 cut(s)	265
NmuCI	GTSAC	2 cut(s)	425, 986
NspI	RCATGY	1 cut(s)	532
OliI	CACNNNNGTG	1 cut(s)	741
PaeR7I	CTCGAG	1 cut(s)	176
PciSI	GCTCTTC	1 cut(s)	860
PdmI	GAANNNNTTC	2 cut(s)	474, 629
PfeI	GAWTC	2 cut(s)	172, 1008
PflMI	CCANNNNNTGG	1 cut(s)	690
PfoI	TCCNGGA	2 cut(s)	198, 372
PkrI	GCNGC	2 cut(s)	191, 748
PleI	GAGTC	2 cut(s)	187, 432
PpsI	GAGTC	2 cut(s)	187, 432
PspEI	GGTNACC	1 cut(s)	986
PspN4I	GGNNCC	1 cut(s)	926
PsuI	RGATCY	1 cut(s)	497
RsaI	GTAC	2 cut(s)	218, 668
RsaNI	GTAC	2 cut(s)	217, 667
RseI	CAYNNNNRTG	2 cut(s)	741, 809
SapI	GCTCTTC	1 cut(s)	860
SaqAI	TTAA	1 cut(s)	963
SatI	GCNGC	2 cut(s)	190, 747
Sau3AI	GATC	4 cut(s)	355, 444, 497, 752
SchI	GAGTC	2 cut(s)	188, 433
ScrFI	CCNGG	2 cut(s)	200, 374
SduI	GDGCHC	2 cut(s)	165, 872
SfaNI	GCATC	4 cut(s)	709, 801, 903, 990
Sfr274I	CTCGAG	1 cut(s)	176
SlaI	CTCGAG	1 cut(s)	176
SmiMI	CAYNNNNRTG	2 cut(s)	741, 809
SmlI	CTYRAG	2 cut(s)	100, 176
SmoI	CTYRAG	2 cut(s)	100, 176
Sse9I	AATT	1 cut(s)	292
SsiI	CCGC	5 cut(s)	137, 507, 749, 958, 1029
SspMI	CTAG	2 cut(s)	27, 921
StyD4I	CCNGG	2 cut(s)	198, 372
StyI	CCWWGG	3 cut(s)	93, 249, 761
TaaI	ACNGT	1 cut(s)	16
TaiI	ACGT	1 cut(s)	979
TaqI	TCGA	4 cut(s)	177, 207, 932, 1011
TasI	AATT	1 cut(s)	292
TatI	WGTACW	1 cut(s)	666
TfiI	GAWTC	2 cut(s)	172, 1008
Tru1I	TTAA	1 cut(s)	963
Tru9I	TTAA	1 cut(s)	963
TscAI	CASTG	3 cut(s)	162, 485, 877
TseFI	GTSAC	2 cut(s)	425, 986
TseI	GCWGC	2 cut(s)	189, 746
Tsp45I	GTSAC	2 cut(s)	425, 986
TspDTI	ATGAA	3 cut(s)	664, 1065, 1086
TspGWI	ACGGA	1 cut(s)	342
TspRI	CASTG	3 cut(s)	162, 485, 877
Van91I	CCANNNNNTGG	1 cut(s)	690
XceI	RCATGY	1 cut(s)	532
XhoI	CTCGAG	1 cut(s)	176
XmiI	GTMKAC	2 cut(s)	645, 770
XmnI	GAANNNNTTC	2 cut(s)	474, 629
XspI	CTAG	2 cut(s)	27, 921

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.