FvH4_4g34160

Belongs to the glycosyltransferase 8 family

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb4
Physical Location & Seq
Forward (+)
32101348 .. 32104173
2826 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_4g34160.t1

Sequence Viewer

Length: 1035 bp
ATGGCACCACCTGAAGTTCCGGTAGATGTGTTCACCGCCACGAACAAGGTCTCAAAGTTGAGCTCAGGCTACTCCAAGAAGAGGGCCTATGTCACATTCTTGGCCGGTAATGGTGATTATGTCAAAGGAGTAGTCGGATTGTCTAAGGGTTTGCGCAAGGTGAAGGCTGCTTACCCTCTTGTGGTTGCAATATTGCCTGACGTCCCCGAAGAACACCGTGAGATTTTGAGGTCTCAAGGTTGTATTGTTCGTGAGATCGTGCCTATCTATCCTCCTAAGAACCAAGTCGAGTTTGCTATGGCATACTATGTCATCAACTACTCCAAGCTCCGGATTTGGAATTTTGAGGAGTATAGCAAGATGATATATTTGGATGCGGACATCCAAGTGTACAACAACATAGATCATCTCTTTGACACTCCTGATGGATACTTCTATGCTGTGATGGATTGCTTCTGTGAGAAAACATGGAGTCACTCGCCGCAGTACAAAGTTGGGTATTGCCAGCAGTGCCCTGACAAGGTTACATGGCCGGCAGAGATGGGTTCTCCTCCTCCTTTGTATTTCAACGCCGGCATGTTTGTGTTCGAGCCTAATCAATTAACCTACGAAAGCCTTCTTGAGACTCTCCTTGTTGTTCCCCCCACACCTTTTGCTGAGCAAGATTTCTTGAACATGTTCTTCCAAAAGACTTACAAGCCCATCCCTCTTGCATACAACCTAGTTCTGGCCATGCTGTGGCGCCACCCCGAGAATGTGAAGCTTGATGAAGTAAACGTTGTCCACTACTGTGCTGCTGGATCAAAACCATGGAGGTACACCGGCGTAGAAGAGAACATGCAGAGAGAGGACATCAAGATGTTAGTAGCAAAATGGTGGGAAGTTTATAACGACGAGTCCCTGGACTTCAAGGCTGATCAAACTACTCCGGCAGCCGCAGAGGAAGATCAAACTTTCTCCAAGTCGTCCATCATGGCTTCGATGCCTCATGAGCCTGCCATGATGACCTACATTCCTGCACCCACTGCTGCTTGA

Protein Analysis

345

Amino Acids

39.34

Weight (kDa)

5.19

Isoelectric Point (pI)

39.98

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Glyco_transf_8 PF01501 32 - 274 5.6e-46 Glycosyl transferase family 8
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 888
AatII GACGTC 1 cut(s) 204
Acc16I TGCGCA 1 cut(s) 155
AccB1I GGYRCC 2 cut(s) 4, 741
AccB7I CCANNNNNTGG 1 cut(s) 738
AccIII TCCGGA 1 cut(s) 330
AciI CCGC 4 cut(s) 36, 377, 482, 936
AclI AACGTT 1 cut(s) 777
AclWI GGATC 1 cut(s) 808
AcoI YGGCCR 3 cut(s) 102, 530, 729
AcsI RAATTY 1 cut(s) 340
AcuI CTGAAG 1 cut(s) 33
AcyI GRCGYC 2 cut(s) 201, 742
AfaI GTAC 3 cut(s) 392, 488, 818
AfiI CCNNNNNNNGG 6 cut(s) 81, 181, 330, 520, 727, 738
AflIII ACRYGT 1 cut(s) 675
AgsI TTSAA 3 cut(s) 568, 673, 910
AjnI CCWGG 1 cut(s) 900
AleI CACNNNNGTG 1 cut(s) 789
AluBI AGCT 3 cut(s) 63, 328, 763
AluI AGCT 3 cut(s) 63, 328, 763
Alw21I GWGCWC 1 cut(s) 65
Alw26I GTCTC 3 cut(s) 55, 237, 617
AlwI GGATC 1 cut(s) 808
Ama87I CYCGRG 1 cut(s) 749
Aor13HI TCCGGA 1 cut(s) 330
AoxI GGCC 4 cut(s) 84, 102, 530, 729
ApeKI GCWGC 4 cut(s) 167, 794, 932, 1028
ApoI RAATTY 1 cut(s) 340
ArsI GACNNNNNNTTYG 2 cut(s) 117, 149
Asp700I GAANNNNTTC 2 cut(s) 615, 677
AspLEI GCGC 2 cut(s) 156, 744
AspS9I GGNCC 1 cut(s) 84
AsuHPI GGTGA 3 cut(s) 25, 125, 172
AvaI CYCGRG 1 cut(s) 749
BaeGI GKGCMC 1 cut(s) 515
BalI TGGCCA 1 cut(s) 731
BanI GGYRCC 2 cut(s) 4, 741
BanII GRGCYC 1 cut(s) 65
BarI GAAGNNNNNNTAC 2 cut(s) 155, 187
Bbv12I GWGCWC 1 cut(s) 65
BbvI GCAGC 4 cut(s) 154, 781, 944, 1015
BccI CCATC 5 cut(s) 419, 439, 535, 710, 977
BciT130I CCWGG 1 cut(s) 902
BciVI GTATCC 1 cut(s) 422
BclI TGATCA 1 cut(s) 916
BcoDI GTCTC 3 cut(s) 55, 237, 617
BfaI CTAG 1 cut(s) 722
BfoI RGCGCY 1 cut(s) 745
BfuI GTATCC 1 cut(s) 422
BisI GCNGC 6 cut(s) 168, 482, 795, 933, 936, 1029
BlpI GCTNAGC 1 cut(s) 657
BlsI GCNGC 6 cut(s) 169, 483, 796, 934, 937, 1030
Bme1390I CCNGG 1 cut(s) 902
BmeT110I CYCGRG 1 cut(s) 749
BmgT120I GGNCC 1 cut(s) 84
BmiI GGNNCC 2 cut(s) 6, 743
BmrFI CCNGG 1 cut(s) 902
BmsI GCATC 2 cut(s) 364, 972
Bpu10I CCTNAGC 1 cut(s) 64
Bpu1102I GCTNAGC 1 cut(s) 657
BpuEI CTTGAG 2 cut(s) 219, 641
BsaHI GRCGYC 2 cut(s) 201, 742
BsaI GGTCTC 2 cut(s) 55, 237
BsaJI CCNNGG 2 cut(s) 809, 900
BsaWI WCCGGW 2 cut(s) 19, 330
Bsc4I CCNNNNNNNGG 6 cut(s) 81, 181, 330, 520, 727, 738
Bse118I RCCGGY 4 cut(s) 104, 532, 572, 821
BseAI TCCGGA 1 cut(s) 330
BseBI CCWGG 1 cut(s) 902
BseDI CCNNGG 2 cut(s) 809, 900
BseGI GGATG 3 cut(s) 379, 381, 702
BseLI CCNNNNNNNGG 6 cut(s) 81, 181, 330, 520, 727, 738
BseMII CTCAG 2 cut(s) 78, 648
BseRI GAGGAG 3 cut(s) 362, 540, 543
BseSI GKGCMC 1 cut(s) 515
BseXI GCAGC 4 cut(s) 154, 781, 944, 1015
BsgI GTGCAG 1 cut(s) 1002
BshFI GGCC 4 cut(s) 86, 104, 532, 731
BshNI GGYRCC 2 cut(s) 4, 741
BsiHKAI GWGCWC 1 cut(s) 65
BsiHKCI CYCGRG 1 cut(s) 749
BsiSI CCGG 7 cut(s) 20, 105, 331, 533, 573, 822, 929
BslFI GGGAC 2 cut(s) 188, 883
BslI CCNNNNNNNGG 6 cut(s) 81, 181, 330, 520, 727, 738
BsmAI GTCTC 3 cut(s) 55, 237, 617
BsmFI GGGAC 2 cut(s) 188, 883
BsnI GGCC 4 cut(s) 86, 104, 532, 731
Bso31I GGTCTC 2 cut(s) 55, 237
BsoBI CYCGRG 1 cut(s) 749
Bsp1286I GDGCHC 2 cut(s) 65, 515
Bsp13I TCCGGA 1 cut(s) 330
Bsp1407I TGTACA 1 cut(s) 390
Bsp143I GATC 5 cut(s) 255, 403, 800, 916, 946
Bsp1720I GCTNAGC 1 cut(s) 657
Bsp19I CCATGG 1 cut(s) 809
BspACI CCGC 4 cut(s) 36, 377, 482, 936
BspANI GGCC 4 cut(s) 86, 104, 532, 731
BspCNI CTCAG 2 cut(s) 77, 649
BspEI TCCGGA 1 cut(s) 330
BspHI TCATGA 1 cut(s) 988
BspLI GGNNCC 2 cut(s) 6, 743
BspPI GGATC 1 cut(s) 808
BspT107I GGYRCC 2 cut(s) 4, 741
BspTNI GGTCTC 2 cut(s) 55, 237
BsrFI RCCGGY 4 cut(s) 104, 532, 572, 821
BsrGI TGTACA 1 cut(s) 390
BssAI RCCGGY 4 cut(s) 104, 532, 572, 821
BssECI CCNNGG 2 cut(s) 809, 900
BssMI GATC 5 cut(s) 255, 403, 800, 916, 946
BssNI GRCGYC 2 cut(s) 201, 742
BssT1I CCWWGG 1 cut(s) 809
Bst2UI CCWGG 1 cut(s) 902
Bst4CI ACNGT 2 cut(s) 218, 791
Bst6I CTCTTC 2 cut(s) 74, 825
BstACI GRCGYC 2 cut(s) 201, 742
BstAPI GCANNNNNTGC 1 cut(s) 1025
BstAUI TGTACA 1 cut(s) 390
BstC8I GCNNGC 4 cut(s) 506, 534, 574, 996
BstDEI CTNAG 4 cut(s) 64, 144, 276, 657
BstDSI CCRYGG 1 cut(s) 809
BstF5I GGATG 3 cut(s) 379, 381, 702
BstH2I RGCGCY 1 cut(s) 745
BstHHI GCGC 2 cut(s) 156, 744
BstKTI GATC 5 cut(s) 258, 406, 803, 919, 949
BstMAI GTCTC 3 cut(s) 55, 237, 617
BstMBI GATC 5 cut(s) 255, 403, 800, 916, 946
BstMWI GCNNNNNNNGC 3 cut(s) 510, 991, 1025
BstNI CCWGG 1 cut(s) 902
BstNSI RCATGY 3 cut(s) 580, 679, 841
BstSCI CCNGG 1 cut(s) 900
BstSLI GKGCMC 1 cut(s) 515
BstV1I GCAGC 4 cut(s) 154, 781, 944, 1015
BsuI GTATCC 1 cut(s) 422
BsuRI GGCC 4 cut(s) 86, 104, 532, 731
BtgI CCRYGG 1 cut(s) 809
BtsCI GGATG 3 cut(s) 379, 381, 702
BtsI GCAGTG 2 cut(s) 515, 1023
BtsIMutI CAGTG 2 cut(s) 515, 1023
Cac8I GCNNGC 4 cut(s) 506, 534, 574, 996
CciI TCATGA 1 cut(s) 988
CfoI GCGC 2 cut(s) 156, 744
Cfr10I RCCGGY 4 cut(s) 104, 532, 572, 821
Cfr13I GGNCC 1 cut(s) 84
Csp6I GTAC 3 cut(s) 391, 487, 817
CspCI CAANNNNNGTGG 2 cut(s) 634, 669
CviQI GTAC 3 cut(s) 391, 487, 817
DdeI CTNAG 4 cut(s) 64, 144, 276, 657
DinI GGCGCC 1 cut(s) 743
DpnI GATC 5 cut(s) 257, 405, 802, 918, 948
DpnII GATC 5 cut(s) 255, 403, 800, 916, 946
EaeI YGGCCR 3 cut(s) 102, 530, 729
Eam1104I CTCTTC 2 cut(s) 74, 825
EarI CTCTTC 2 cut(s) 74, 825
Ecl136II GAGCTC 1 cut(s) 63
Eco130I CCWWGG 1 cut(s) 809
Eco24I GRGCYC 1 cut(s) 65
Eco31I GGTCTC 2 cut(s) 55, 237
Eco53kI GAGCTC 1 cut(s) 63
Eco57I CTGAAG 1 cut(s) 33
Eco88I CYCGRG 1 cut(s) 749
EcoICRI GAGCTC 1 cut(s) 63
EcoO109I RGGNCCY 1 cut(s) 84
EcoRII CCWGG 1 cut(s) 900
EcoT14I CCWWGG 1 cut(s) 809
EcoT38I GRGCYC 1 cut(s) 65
EgeI GGCGCC 1 cut(s) 743
EheI GGCGCC 1 cut(s) 743
ErhI CCWWGG 1 cut(s) 809
FaqI GGGAC 2 cut(s) 188, 883
FbaI TGATCA 1 cut(s) 916
Fnu4HI GCNGC 6 cut(s) 168, 482, 795, 933, 936, 1029
FokI GGATG 3 cut(s) 368, 386, 689
FriOI GRGCYC 1 cut(s) 65
Fsp4HI GCNGC 6 cut(s) 168, 482, 795, 933, 936, 1029
FspBI CTAG 1 cut(s) 722
FspI TGCGCA 1 cut(s) 155
GlaI GCGC 2 cut(s) 155, 743
GluI GCNGC 6 cut(s) 168, 482, 795, 933, 936, 1029
HaeII RGCGCY 1 cut(s) 745
HaeIII GGCC 4 cut(s) 86, 104, 532, 731
HapII CCGG 7 cut(s) 20, 105, 331, 533, 573, 822, 929
HhaI GCGC 2 cut(s) 156, 744
Hin1I GRCGYC 2 cut(s) 201, 742
Hin6I GCGC 2 cut(s) 154, 742
HinP1I GCGC 2 cut(s) 154, 742
HindIII AAGCTT 1 cut(s) 761
HinfI GANTC 3 cut(s) 472, 625, 896
HpaII CCGG 7 cut(s) 20, 105, 331, 533, 573, 822, 929
HphI GGTGA 3 cut(s) 25, 125, 172
Hpy166II GTNNAC 5 cut(s) 33, 391, 775, 784, 819
Hpy188I TCNGA 1 cut(s) 137
Hpy188III TCNNGA 7 cut(s) 251, 331, 422, 620, 670, 856, 989
Hpy8I GTNNAC 5 cut(s) 33, 391, 775, 784, 819
Hpy99I CGWCG 1 cut(s) 896
HpyAV CCTTC 2 cut(s) 157, 626
HpyCH4III ACNGT 2 cut(s) 218, 791
HpyCH4IV ACGT 2 cut(s) 201, 777
HpyCH4V TGCA 4 cut(s) 188, 713, 841, 1019
HpyF10VI GCNNNNNNNGC 3 cut(s) 510, 991, 1025
HpyF3I CTNAG 4 cut(s) 64, 144, 276, 657
HpySE526I ACGT 2 cut(s) 201, 777
Hsp92I GRCGYC 2 cut(s) 201, 742
HspAI GCGC 2 cut(s) 154, 742
KasI GGCGCC 1 cut(s) 741
Kpn2I TCCGGA 1 cut(s) 330
KroI GCCGGC 2 cut(s) 532, 572
KroNI GCCGGC 2 cut(s) 534, 574
Ksp22I TGATCA 1 cut(s) 916
Kzo9I GATC 5 cut(s) 255, 403, 800, 916, 946
LmnI GCTCC 1 cut(s) 333
Lsp1109I GCAGC 4 cut(s) 154, 781, 944, 1015
LweI GCATC 2 cut(s) 364, 972
MaeI CTAG 1 cut(s) 722
MaeII ACGT 2 cut(s) 201, 777
MaeIII GTNAC 3 cut(s) 91, 473, 523
MalI GATC 5 cut(s) 257, 405, 802, 918, 948
MboI GATC 5 cut(s) 255, 403, 800, 916, 946
MboII GAAGA 5 cut(s) 91, 221, 673, 842, 956
MhlI GDGCHC 2 cut(s) 65, 515
MlsI TGGCCA 1 cut(s) 731
MluCI AATT 2 cut(s) 340, 599
MluNI TGGCCA 1 cut(s) 731
Mly113I GGCGCC 1 cut(s) 742
MlyI GAGTC 3 cut(s) 481, 619, 905
MmeI TCCRAC 1 cut(s) 115
Mox20I TGGCCA 1 cut(s) 731
MroI TCCGGA 1 cut(s) 330
MroNI GCCGGC 2 cut(s) 532, 572
MroXI GAANNNNTTC 2 cut(s) 615, 677
MscI TGGCCA 1 cut(s) 731
MseI TTAA 1 cut(s) 602
MslI CAYNNNNRTG 4 cut(s) 386, 581, 789, 857
Msp20I TGGCCA 1 cut(s) 731
MspI CCGG 7 cut(s) 20, 105, 331, 533, 573, 822, 929
MspR9I CCNGG 1 cut(s) 902
MvaI CCWGG 1 cut(s) 902
MwoI GCNNNNNNNGC 3 cut(s) 510, 991, 1025
NaeI GCCGGC 2 cut(s) 534, 574
NarI GGCGCC 1 cut(s) 742
NcoI CCATGG 1 cut(s) 809
NdeII GATC 5 cut(s) 255, 403, 800, 916, 946
NgoMIV GCCGGC 2 cut(s) 532, 572
NlaIV GGNNCC 2 cut(s) 6, 743
NmuCI GTSAC 2 cut(s) 91, 473
NsbI TGCGCA 1 cut(s) 155
NspI RCATGY 3 cut(s) 580, 679, 841
OliI CACNNNNGTG 1 cut(s) 789
PagI TCATGA 1 cut(s) 988
PciI ACATGT 1 cut(s) 675
PdiI GCCGGC 2 cut(s) 534, 574
PdmI GAANNNNTTC 2 cut(s) 615, 677
PflMI CCANNNNNTGG 1 cut(s) 738
PkrI GCNGC 6 cut(s) 169, 483, 796, 934, 937, 1030
PleI GAGTC 3 cut(s) 480, 619, 904
PluTI GGCGCC 1 cut(s) 745
PpsI GAGTC 3 cut(s) 480, 619, 904
PscI ACATGT 1 cut(s) 675
PsiI TTATAA 1 cut(s) 888
Psp124BI GAGCTC 1 cut(s) 65
Psp1406I AACGTT 1 cut(s) 777
Psp6I CCWGG 1 cut(s) 900
PspGI CCWGG 1 cut(s) 900
PspN4I GGNNCC 2 cut(s) 6, 743
PspPI GGNCC 1 cut(s) 84
RsaI GTAC 3 cut(s) 392, 488, 818
RsaNI GTAC 3 cut(s) 391, 487, 817
RseI CAYNNNNRTG 4 cut(s) 386, 581, 789, 857
SacI GAGCTC 1 cut(s) 65
SaqAI TTAA 1 cut(s) 602
SatI GCNGC 6 cut(s) 168, 482, 795, 933, 936, 1029
Sau3AI GATC 5 cut(s) 255, 403, 800, 916, 946
Sau96I GGNCC 1 cut(s) 84
SchI GAGTC 3 cut(s) 481, 619, 905
ScrFI CCNGG 1 cut(s) 902
SduI GDGCHC 2 cut(s) 65, 515
SfaNI GCATC 2 cut(s) 364, 972
SfoI GGCGCC 1 cut(s) 743
SgrAI CRCCGGYG 1 cut(s) 821
SmiMI CAYNNNNRTG 4 cut(s) 386, 581, 789, 857
SmlI CTYRAG 2 cut(s) 234, 620
SmoI CTYRAG 2 cut(s) 234, 620
Sse9I AATT 2 cut(s) 340, 599
SsiI CCGC 4 cut(s) 36, 377, 482, 936
SspDI GGCGCC 1 cut(s) 741
SspI AATATT 1 cut(s) 192
SspMI CTAG 1 cut(s) 722
SstI GAGCTC 1 cut(s) 65
StyD4I CCNGG 1 cut(s) 900
StyI CCWWGG 1 cut(s) 809
TaaI ACNGT 2 cut(s) 218, 791
TaiI ACGT 2 cut(s) 204, 780
TaqI TCGA 3 cut(s) 288, 588, 980
TasI AATT 2 cut(s) 340, 599
TatI WGTACW 2 cut(s) 390, 486
TauI GCSGC 2 cut(s) 484, 938
Tru1I TTAA 1 cut(s) 602
Tru9I TTAA 1 cut(s) 602
TscAI CASTG 2 cut(s) 515, 1030
TseFI GTSAC 2 cut(s) 91, 473
TseI GCWGC 4 cut(s) 167, 794, 932, 1028
Tsp45I GTSAC 2 cut(s) 91, 473
TspDTI ATGAA 1 cut(s) 783
TspRI CASTG 2 cut(s) 515, 1030
Van91I CCANNNNNTGG 1 cut(s) 738
XapI RAATTY 1 cut(s) 340
XceI RCATGY 3 cut(s) 580, 679, 841
XmnI GAANNNNTTC 2 cut(s) 615, 677
XspI CTAG 1 cut(s) 722
ZraI GACGTC 1 cut(s) 202
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.