Rroxscaffold_5G00384220

Belongs to the glycosyltransferase 8 family

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000005
Physical Location & Seq
Forward (+)
63711188 .. 63712878
1691 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_5G00384220.1

Sequence Viewer

Length: 1023 bp
ATGGCTCCACCTGAAGTTCCGGTAGATGTGTTCACGGCCACCAGCAAGGTCTTGACGTTGAGTGCAGGCTACTCCAAGAGGGCCTATGTGACATTCTTAGCCGGTAATGGTGACTACGTCAAAGGAGTCGTGGGATTGGCAAAGGGTTTACGAAAGGTGAAGACTGCCTACCCTCTAGTGGTTGCAATATTGCCTGACGTCCCGGAAGAACACCGTGAGATTTTGAGGTCTCAAGGTTGTATTGTTCGTGAGATCATGCCAATTTATCCTCCTAAGAACCAAGTCGAGTTTGCTATGGCATATTATGTCATCAACTACTCCAAGCTCCGGATTTGGAATTTTGAGGAGTACAGCAAGATGATATATTTGGATGCGGACATCCAAGTGTACAACAACATAGATCACCTCTTTGACACTCCTGATGGATACTTCTATGCCGTGATGGATTGCTTCTGTGAACATACATGGAGTCACTCGCCGCAGTACAAAGTTGGGTATTGCCAGCAGTGCCCAGACAAGGTTACATGGCCGGCCGAGATGGGTTCTCCTCCTCTGTTGTACTTCAACGCCGGCATGTTCGTGTTTGAGCCTAATCGTTTGACCTACGAAAGCCTTCTCGAGAATCTCCTGGTTGTTCCTCCCACACCTTTTGCAGAGCAAGATTTCTTGAACATGTTCTTCCAAAAGACTTACAAGCCCATCCCTCTTGCATACAACCTAGTTCTGGCCATGCTGTGGCGCCACCCAGAGAATGTGAAGCTTGATGAAGTAAACGTTGTCCACTACTGTGCTGCTGGATCAAAGCCATGGAGGTACACCGGCGTAGAAGAAAACATGCAGAGAGAGGACATCAAGATGTTAGTAGCAAAATGGTGGGAAGTTTATAACGACGAGTCCCTGGATTTCAAAGCTGATCAACCCCCGGCTGCTGCAGAAGATCAAACTTTCTCCAAGTCGTTGATCATGGGTTCTATGCCTCATGGGACTGCCATGACTTTCATTCCTGCACCCACTGCTGCTTGA

Protein Analysis

340

Amino Acids

38.85

Weight (kDa)

5.24

Isoelectric Point (pI)

37.95

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Glyco_transf_8 PF01501 31 - 273 1.6e-45 Glycosyl transferase family 8
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 885
AatII GACGTC 1 cut(s) 201
AccB1I GGYRCC 1 cut(s) 738
AccB7I CCANNNNNTGG 1 cut(s) 735
AccIII TCCGGA 1 cut(s) 327
AciI CCGC 2 cut(s) 374, 479
AclI AACGTT 1 cut(s) 774
AclWI GGATC 1 cut(s) 805
AcoI YGGCCR 4 cut(s) 36, 527, 531, 726
AcsI RAATTY 1 cut(s) 337
AcuI CTGAAG 1 cut(s) 33
AcyI GRCGYC 2 cut(s) 198, 739
AfaI GTAC 5 cut(s) 350, 389, 485, 560, 815
AfiI CCNNNNNNNGG 5 cut(s) 178, 327, 517, 724, 735
AflIII ACRYGT 1 cut(s) 672
AgsI TTSAA 3 cut(s) 565, 670, 907
AjnI CCWGG 2 cut(s) 627, 897
AleI CACNNNNGTG 1 cut(s) 786
AluBI AGCT 3 cut(s) 325, 760, 911
AluI AGCT 3 cut(s) 325, 760, 911
Alw26I GTCTC 1 cut(s) 234
AlwI GGATC 1 cut(s) 805
Ama87I CYCGRG 1 cut(s) 617
Aor13HI TCCGGA 1 cut(s) 327
AoxI GGCC 5 cut(s) 36, 81, 527, 531, 726
ApeKI GCWGC 4 cut(s) 791, 926, 929, 1016
ApoI RAATTY 1 cut(s) 337
Asp700I GAANNNNTTC 2 cut(s) 612, 674
AspLEI GCGC 1 cut(s) 741
AspS9I GGNCC 1 cut(s) 81
AsuC2I CCSGG 2 cut(s) 203, 923
AsuHPI GGTGA 3 cut(s) 122, 169, 395
AvaI CYCGRG 1 cut(s) 617
BaeGI GKGCMC 1 cut(s) 512
BalI TGGCCA 1 cut(s) 728
BanI GGYRCC 1 cut(s) 738
BarI GAAGNNNNNNTAC 2 cut(s) 152, 184
BbsI GAAGAC 1 cut(s) 167
BbvI GCAGC 4 cut(s) 778, 913, 916, 1003
BccI CCATC 4 cut(s) 416, 436, 532, 707
BceAI ACGGC 2 cut(s) 51, 422
BciT130I CCWGG 2 cut(s) 629, 899
BciVI GTATCC 1 cut(s) 419
BclI TGATCA 2 cut(s) 913, 960
BcnI CCSGG 2 cut(s) 203, 923
BcoDI GTCTC 1 cut(s) 234
BfaI CTAG 2 cut(s) 176, 719
BfmI CTRYAG 1 cut(s) 930
BfoI RGCGCY 1 cut(s) 742
BfuI GTATCC 1 cut(s) 419
BisI GCNGC 5 cut(s) 479, 792, 927, 930, 1017
BlsI GCNGC 5 cut(s) 480, 793, 928, 931, 1018
Bme1390I CCNGG 4 cut(s) 203, 629, 899, 923
BmeT110I CYCGRG 1 cut(s) 617
BmgT120I GGNCC 1 cut(s) 81
BmiI GGNNCC 2 cut(s) 6, 740
BmrFI CCNGG 4 cut(s) 203, 629, 899, 923
BmsI GCATC 1 cut(s) 361
BpiI GAAGAC 1 cut(s) 167
BpuEI CTTGAG 1 cut(s) 216
BpuMI CCSGG 2 cut(s) 203, 923
BsaHI GRCGYC 2 cut(s) 198, 739
BsaI GGTCTC 1 cut(s) 234
BsaJI CCNNGG 3 cut(s) 806, 897, 921
BsaWI WCCGGW 2 cut(s) 19, 327
Bsc4I CCNNNNNNNGG 5 cut(s) 178, 327, 517, 724, 735
Bse118I RCCGGY 4 cut(s) 101, 529, 569, 818
BseAI TCCGGA 1 cut(s) 327
BseBI CCWGG 2 cut(s) 629, 899
BseDI CCNNGG 3 cut(s) 806, 897, 921
BseGI GGATG 3 cut(s) 376, 378, 699
BseLI CCNNNNNNNGG 5 cut(s) 178, 327, 517, 724, 735
BseRI GAGGAG 3 cut(s) 359, 537, 540
BseSI GKGCMC 1 cut(s) 512
BseX3I CGGCCG 1 cut(s) 531
BseXI GCAGC 4 cut(s) 778, 913, 916, 1003
BsgI GTGCAG 2 cut(s) 84, 990
Bsh1285I CGRYCG 1 cut(s) 534
BshFI GGCC 5 cut(s) 38, 83, 529, 533, 728
BshNI GGYRCC 1 cut(s) 738
BsiEI CGRYCG 1 cut(s) 534
BsiHKCI CYCGRG 1 cut(s) 617
BsiSI CCGG 8 cut(s) 20, 102, 203, 328, 530, 570, 819, 923
BslFI GGGAC 3 cut(s) 185, 880, 997
BslI CCNNNNNNNGG 5 cut(s) 178, 327, 517, 724, 735
BsmAI GTCTC 1 cut(s) 234
BsmFI GGGAC 3 cut(s) 185, 880, 997
BsnI GGCC 5 cut(s) 38, 83, 529, 533, 728
Bso31I GGTCTC 1 cut(s) 234
BsoBI CYCGRG 1 cut(s) 617
Bsp1286I GDGCHC 1 cut(s) 512
Bsp13I TCCGGA 1 cut(s) 327
Bsp1407I TGTACA 1 cut(s) 387
Bsp143I GATC 6 cut(s) 252, 400, 797, 913, 937, 960
Bsp19I CCATGG 1 cut(s) 806
BspACI CCGC 2 cut(s) 374, 479
BspANI GGCC 5 cut(s) 38, 83, 529, 533, 728
BspEI TCCGGA 1 cut(s) 327
BspLI GGNNCC 2 cut(s) 6, 740
BspMAI CTGCAG 1 cut(s) 934
BspPI GGATC 1 cut(s) 805
BspT107I GGYRCC 1 cut(s) 738
BspTNI GGTCTC 1 cut(s) 234
BsrFI RCCGGY 4 cut(s) 101, 529, 569, 818
BsrGI TGTACA 1 cut(s) 387
BssAI RCCGGY 4 cut(s) 101, 529, 569, 818
BssECI CCNNGG 3 cut(s) 806, 897, 921
BssMI GATC 6 cut(s) 252, 400, 797, 913, 937, 960
BssNI GRCGYC 2 cut(s) 198, 739
BssT1I CCWWGG 1 cut(s) 806
Bst2UI CCWGG 2 cut(s) 629, 899
Bst4CI ACNGT 2 cut(s) 215, 788
BstACI GRCGYC 2 cut(s) 198, 739
BstAPI GCANNNNNTGC 1 cut(s) 1013
BstAUI TGTACA 1 cut(s) 387
BstC8I GCNNGC 4 cut(s) 67, 503, 531, 571
BstDEI CTNAG 2 cut(s) 97, 273
BstDSI CCRYGG 1 cut(s) 806
BstF5I GGATG 3 cut(s) 376, 378, 699
BstH2I RGCGCY 1 cut(s) 742
BstHHI GCGC 1 cut(s) 741
BstKTI GATC 6 cut(s) 255, 403, 800, 916, 940, 963
BstMAI GTCTC 1 cut(s) 234
BstMBI GATC 6 cut(s) 252, 400, 797, 913, 937, 960
BstMCI CGRYCG 1 cut(s) 534
BstMWI GCNNNNNNNGC 2 cut(s) 507, 1013
BstNI CCWGG 2 cut(s) 629, 899
BstNSI RCATGY 3 cut(s) 577, 676, 838
BstSCI CCNGG 4 cut(s) 201, 627, 897, 921
BstSFI CTRYAG 1 cut(s) 930
BstSLI GKGCMC 1 cut(s) 512
BstV1I GCAGC 4 cut(s) 778, 913, 916, 1003
BstV2I GAAGAC 1 cut(s) 167
BstZI CGGCCG 1 cut(s) 531
BsuI GTATCC 1 cut(s) 419
BsuRI GGCC 5 cut(s) 38, 83, 529, 533, 728
BtgI CCRYGG 1 cut(s) 806
BtsCI GGATG 3 cut(s) 376, 378, 699
BtsI GCAGTG 2 cut(s) 512, 1011
BtsIMutI CAGTG 2 cut(s) 512, 1011
Cac8I GCNNGC 4 cut(s) 67, 503, 531, 571
CfoI GCGC 1 cut(s) 741
Cfr10I RCCGGY 4 cut(s) 101, 529, 569, 818
Cfr13I GGNCC 1 cut(s) 81
Csp6I GTAC 5 cut(s) 349, 388, 484, 559, 814
CspCI CAANNNNNGTGG 2 cut(s) 631, 666
CviQI GTAC 5 cut(s) 349, 388, 484, 559, 814
DdeI CTNAG 2 cut(s) 97, 273
DinI GGCGCC 1 cut(s) 740
DpnI GATC 6 cut(s) 254, 402, 799, 915, 939, 962
DpnII GATC 6 cut(s) 252, 400, 797, 913, 937, 960
EaeI YGGCCR 4 cut(s) 36, 527, 531, 726
EagI CGGCCG 1 cut(s) 531
EclXI CGGCCG 1 cut(s) 531
Eco130I CCWWGG 1 cut(s) 806
Eco31I GGTCTC 1 cut(s) 234
Eco52I CGGCCG 1 cut(s) 531
Eco57I CTGAAG 1 cut(s) 33
Eco88I CYCGRG 1 cut(s) 617
EcoO109I RGGNCCY 1 cut(s) 81
EcoRII CCWGG 2 cut(s) 627, 897
EcoT14I CCWWGG 1 cut(s) 806
EgeI GGCGCC 1 cut(s) 740
EheI GGCGCC 1 cut(s) 740
ErhI CCWWGG 1 cut(s) 806
FaqI GGGAC 3 cut(s) 185, 880, 997
FbaI TGATCA 2 cut(s) 913, 960
Fnu4HI GCNGC 5 cut(s) 479, 792, 927, 930, 1017
FokI GGATG 3 cut(s) 365, 383, 686
FseI GGCCGGCC 1 cut(s) 533
Fsp4HI GCNGC 5 cut(s) 479, 792, 927, 930, 1017
FspBI CTAG 2 cut(s) 176, 719
GlaI GCGC 1 cut(s) 740
GluI GCNGC 5 cut(s) 479, 792, 927, 930, 1017
HaeII RGCGCY 1 cut(s) 742
HaeIII GGCC 5 cut(s) 38, 83, 529, 533, 728
HapII CCGG 8 cut(s) 20, 102, 203, 328, 530, 570, 819, 923
HhaI GCGC 1 cut(s) 741
Hin1I GRCGYC 2 cut(s) 198, 739
Hin6I GCGC 1 cut(s) 739
HinP1I GCGC 1 cut(s) 739
HindIII AAGCTT 1 cut(s) 758
HinfI GANTC 4 cut(s) 126, 469, 622, 893
HpaII CCGG 8 cut(s) 20, 102, 203, 328, 530, 570, 819, 923
HphI GGTGA 3 cut(s) 122, 169, 395
Hpy166II GTNNAC 7 cut(s) 33, 149, 388, 458, 772, 781, 816
Hpy188III TCNNGA 8 cut(s) 52, 248, 328, 419, 617, 619, 667, 853
Hpy8I GTNNAC 7 cut(s) 33, 149, 388, 458, 772, 781, 816
Hpy99I CGWCG 1 cut(s) 893
HpyAV CCTTC 1 cut(s) 623
HpyCH4III ACNGT 2 cut(s) 215, 788
HpyCH4IV ACGT 4 cut(s) 56, 117, 198, 774
HpyCH4V TGCA 7 cut(s) 65, 185, 653, 710, 838, 932, 1007
HpyF10VI GCNNNNNNNGC 2 cut(s) 507, 1013
HpyF3I CTNAG 2 cut(s) 97, 273
HpySE526I ACGT 4 cut(s) 56, 117, 198, 774
Hsp92I GRCGYC 2 cut(s) 198, 739
HspAI GCGC 1 cut(s) 739
KasI GGCGCC 1 cut(s) 738
Kpn2I TCCGGA 1 cut(s) 327
KroI GCCGGC 2 cut(s) 529, 569
KroNI GCCGGC 2 cut(s) 531, 571
Ksp22I TGATCA 2 cut(s) 913, 960
Kzo9I GATC 6 cut(s) 252, 400, 797, 913, 937, 960
LmnI GCTCC 2 cut(s) 10, 330
Lsp1109I GCAGC 4 cut(s) 778, 913, 916, 1003
LweI GCATC 1 cut(s) 361
MaeI CTAG 2 cut(s) 176, 719
MaeII ACGT 4 cut(s) 56, 117, 198, 774
MaeIII GTNAC 4 cut(s) 88, 110, 470, 520
MalI GATC 6 cut(s) 254, 402, 799, 915, 939, 962
MboI GATC 6 cut(s) 252, 400, 797, 913, 937, 960
MboII GAAGA 5 cut(s) 172, 218, 670, 839, 947
MhlI GDGCHC 1 cut(s) 512
MlsI TGGCCA 1 cut(s) 728
MluCI AATT 2 cut(s) 261, 337
MluNI TGGCCA 1 cut(s) 728
Mly113I GGCGCC 1 cut(s) 739
MlyI GAGTC 3 cut(s) 135, 478, 902
Mox20I TGGCCA 1 cut(s) 728
MroI TCCGGA 1 cut(s) 327
MroNI GCCGGC 2 cut(s) 529, 569
MroXI GAANNNNTTC 2 cut(s) 612, 674
MscI TGGCCA 1 cut(s) 728
MslI CAYNNNNRTG 4 cut(s) 383, 578, 786, 854
Msp20I TGGCCA 1 cut(s) 728
MspI CCGG 8 cut(s) 20, 102, 203, 328, 530, 570, 819, 923
MspR9I CCNGG 4 cut(s) 203, 629, 899, 923
MvaI CCWGG 2 cut(s) 629, 899
MwoI GCNNNNNNNGC 2 cut(s) 507, 1013
NaeI GCCGGC 2 cut(s) 531, 571
NarI GGCGCC 1 cut(s) 739
NciI CCSGG 2 cut(s) 203, 923
NcoI CCATGG 1 cut(s) 806
NdeII GATC 6 cut(s) 252, 400, 797, 913, 937, 960
NgoMIV GCCGGC 2 cut(s) 529, 569
NlaIV GGNNCC 2 cut(s) 6, 740
NmeAIII GCCGAG 1 cut(s) 559
NmuCI GTSAC 3 cut(s) 88, 110, 470
NspI RCATGY 3 cut(s) 577, 676, 838
OliI CACNNNNGTG 1 cut(s) 786
PaeR7I CTCGAG 1 cut(s) 617
PciI ACATGT 1 cut(s) 672
PdiI GCCGGC 2 cut(s) 531, 571
PdmI GAANNNNTTC 2 cut(s) 612, 674
PfeI GAWTC 1 cut(s) 622
PflFI GACNNNGTC 1 cut(s) 116
PflMI CCANNNNNTGG 1 cut(s) 735
PfoI TCCNGGA 1 cut(s) 201
PkrI GCNGC 5 cut(s) 480, 793, 928, 931, 1018
PleI GAGTC 3 cut(s) 134, 477, 901
PluTI GGCGCC 1 cut(s) 742
PpsI GAGTC 3 cut(s) 134, 477, 901
PscI ACATGT 1 cut(s) 672
PsiI TTATAA 1 cut(s) 885
Psp1406I AACGTT 1 cut(s) 774
Psp6I CCWGG 2 cut(s) 627, 897
PspGI CCWGG 2 cut(s) 627, 897
PspN4I GGNNCC 2 cut(s) 6, 740
PspPI GGNCC 1 cut(s) 81
PstI CTGCAG 1 cut(s) 934
PsyI GACNNNGTC 1 cut(s) 116
RigI GGCCGGCC 1 cut(s) 533
RsaI GTAC 5 cut(s) 350, 389, 485, 560, 815
RsaNI GTAC 5 cut(s) 349, 388, 484, 559, 814
RseI CAYNNNNRTG 4 cut(s) 383, 578, 786, 854
SatI GCNGC 5 cut(s) 479, 792, 927, 930, 1017
Sau3AI GATC 6 cut(s) 252, 400, 797, 913, 937, 960
Sau96I GGNCC 1 cut(s) 81
SchI GAGTC 3 cut(s) 135, 478, 902
ScrFI CCNGG 4 cut(s) 203, 629, 899, 923
SduI GDGCHC 1 cut(s) 512
SfaNI GCATC 1 cut(s) 361
SfcI CTRYAG 1 cut(s) 930
SfoI GGCGCC 1 cut(s) 740
Sfr274I CTCGAG 1 cut(s) 617
SgrAI CRCCGGYG 1 cut(s) 818
SlaI CTCGAG 1 cut(s) 617
SmiMI CAYNNNNRTG 4 cut(s) 383, 578, 786, 854
SmlI CTYRAG 2 cut(s) 231, 617
SmoI CTYRAG 2 cut(s) 231, 617
Sse9I AATT 2 cut(s) 261, 337
SsiI CCGC 2 cut(s) 374, 479
SspDI GGCGCC 1 cut(s) 738
SspI AATATT 1 cut(s) 189
SspMI CTAG 2 cut(s) 176, 719
StyD4I CCNGG 4 cut(s) 201, 627, 897, 921
StyI CCWWGG 1 cut(s) 806
TaaI ACNGT 2 cut(s) 215, 788
TaiI ACGT 4 cut(s) 59, 120, 201, 777
TaqI TCGA 2 cut(s) 285, 618
TasI AATT 2 cut(s) 261, 337
TatI WGTACW 4 cut(s) 348, 387, 483, 558
TauI GCSGC 1 cut(s) 481
TfiI GAWTC 1 cut(s) 622
TscAI CASTG 2 cut(s) 512, 1018
TseFI GTSAC 3 cut(s) 88, 110, 470
TseI GCWGC 4 cut(s) 791, 926, 929, 1016
Tsp45I GTSAC 3 cut(s) 88, 110, 470
TspDTI ATGAA 2 cut(s) 780, 988
TspRI CASTG 2 cut(s) 512, 1018
Tth111I GACNNNGTC 1 cut(s) 116
Van91I CCANNNNNTGG 1 cut(s) 735
XapI RAATTY 1 cut(s) 337
XceI RCATGY 3 cut(s) 577, 676, 838
XhoI CTCGAG 1 cut(s) 617
XmnI GAANNNNTTC 2 cut(s) 612, 674
XspI CTAG 2 cut(s) 176, 719
ZraI GACGTC 1 cut(s) 199
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.