Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0001700

Physical Location & Seq

Genomic Coordinates Reverse (-)

22271131 .. 22273367

Gene Structure 2237 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT1G60450.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 999 bp

ATGACCCCTGAAACTCATGTGGACATGATCAATGCATCCGAGAAGGCTCCTAAGGAGAGAGCCTACGTGACGTTTTTGGCAGGAAATGGAGACTACGTGAAGGGAGTGGTGGGATTAGCAAAGGGTTTGCGGAAGGTCAAAAGTGCGTATCCTCTTGTTGTTGCTATGTTACCTGATGTGCCTGAAGAACATAGAGAGATCTTGAGGTCTCAAGGATGCATTGTGCGTGAGATCGAGCCTGTTCATCCTCCAGATAGCCAAGATGCATACGCAAGGGCTTATTACATTATTAACTACTCAAAACTGCGAATTTGGAATTTTGAAGAGTACAACAAGATGATCTACTTGGACGCAGATATTCAAGTCTTTGGCAATATCGATGACCTCTTTGATATGCAAGATGGCTATTTACATGGCGTGTTGAGTTGTTTCTGTGAGAAAATATGGAGTTACACTCCTCTCTACTCGATCGGCTATTGTCAATATTGTCCTGAGAAGGTCGTGTGGCCCGCCGAGATGGAATCTGCTCCTCCCTCTCCATACTTCAATGCCGGTATGTTTGTATTTGAGCCTAATCCTTTGACGTATGAGAGTCTCCTTCAGACCCTCCAGGTCACACCTCCTACACCATTTGCGGAGCAAGATTTTCTCAATATGTTCTTTGGGAAGGTCTTTAAACCGGTATCTCCGGTATACAACCTGATTTTGTCTGTGCTTTGGCGCCATCCGGGGAAGGTTGACTTGGAGAGTGTCAAAGTTGTTCACTACTGTCCACCTGGATCCAAGCCATGGAGGTACACAGGAGAAGAACCTAACATGGACAGAGAAGACGTCAAAATGTTAATTAAGAAATGGTGGGATATCTACAATGACGAGTCTCTTGATTTTAAACCGAAAAGCCCTGCAGATTTGGAAGCAACCGTTTTGGAATCAACAATTATAGCTTCGGTAACCGAAGCACCACTTTCCTACTCTCCTGCTGCACCTTCTGCCGCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000271 GO:0003674 GO:0003824 GO:0005488 GO:0005536 GO:0005975 GO:0005976 GO:0005977 GO:0005978 GO:0005996 GO:0006012 GO:0006073 GO:0006091 GO:0006112 GO:0006950 GO:0006979 GO:0008150 GO:0008152 GO:0008194 GO:0008378 GO:0008466 GO:0009058 GO:0009059 GO:0009250 GO:0009987 GO:0015980 GO:0016051 GO:0016740 GO:0016757 GO:0016758 GO:0019318 GO:0030246 GO:0033692 GO:0034637 GO:0034645 GO:0035250 GO:0035251 GO:0036094 GO:0043170 GO:0044042 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044262 GO:0044264 GO:0044281 GO:0046527 GO:0047216 GO:0048029 GO:0050896 GO:0055114 GO:0071704 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00052 map00052

Pfam Domains

Protein Families

Glyco_transf_8

Protein Analysis

332

Amino Acids

37.77

Weight (kDa)

4.93

Isoelectric Point (pI)

46.7

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Glyco_transf_8	PF01501	24 - 267	3.4e-51	Glycosyl transferase family 8

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001700)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G60450 AT1G60470
fragaria_vesca	FvH4_4g20790 FvH4_4g34160
malus_domestica	MD13G1093700.v1.1 MD13G1147700.v1.1 MD16G1095000.v1.1
prunus_persica	Prupe.1G111300_v2.0.a1 Prupe.1G251600_v2.0.a1 Prupe.8G258200_v2.0.a1
pyrus_communis	pycom13g08160 pycom13g12730 pycom16g08080 pycom16g08090 pycom16g12600
rosa_chinensis	RchiOBHm_Chr4g0426261 RchiOBHm_Chr4g0443671 RchiOBHm_Chr6g0293551
rosa_laevigata	RLG00000005903 RLG00000007308 RLG00000011942
rosa_multiflora	Rmu_co8279911.1_g000001 Rmu_sc0000730.1_g000037 Rmu_sc0001426.1_g000017 Rmu_sc0032866.1_g000001 Rmu_sc0036604.1_g000001
rosa_roxburghii	Rroxscaffold_5G00368270 Rroxscaffold_5G00384220
rosa_rugosa	Rorug04G0209900 Rorug06G0236400
rosa_samantha	Rh4AG266800 Rh4AG406100 Rh4BG272700 Rh4BG417100 Rh4CG286100 Rh4CG286400 Rh4CG431600 Rh4DG269100 Rh4DG269300 Rh4DG412700 Rh6AG349100 Rh6BG356500 Rh6CG363200 Rh6DG350100
rosa_wichuraiana	Rw4G023060 Rw4G023080 Rw4G034870 Rw6G030370

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	834
AccB1I	GGYRCC	1 cut(s)	720
AccB7I	CCANNNNNTGG	1 cut(s)	789
AccI	GTMKAC	1 cut(s)	693
AciI	CCGC	4 cut(s)	130, 510, 635, 993
AclWI	GGATC	2 cut(s)	774, 787
AcsI	RAATTY	2 cut(s)	309, 316
AcuI	CTGAAG	2 cut(s)	204, 584
AcyI	GRCGYC	2 cut(s)	721, 831
AfaI	GTAC	2 cut(s)	329, 797
AfiI	CCNNNNNNNGG	1 cut(s)	789
AgeI	ACCGGT	1 cut(s)	679
AgsI	TTSAA	3 cut(s)	323, 362, 547
AjnI	CCWGG	2 cut(s)	609, 775
AjuI	GAANNNNNNNTTGG	2 cut(s)	725, 757
AluBI	AGCT	1 cut(s)	944
AluI	AGCT	1 cut(s)	944
Alw26I	GTCTC	4 cut(s)	84, 213, 599, 882
AlwI	GGATC	2 cut(s)	774, 787
AoxI	GGCC	1 cut(s)	506
ApeKI	GCWGC	1 cut(s)	980
ApoI	RAATTY	2 cut(s)	309, 316
AsiGI	ACCGGT	1 cut(s)	679
AspLEI	GCGC	1 cut(s)	723
AspS9I	GGNCC	1 cut(s)	507
AsuC2I	CCSGG	1 cut(s)	729
AxyI	CCTNAGG	1 cut(s)	51
BamHI	GGATCC	1 cut(s)	779
BanI	GGYRCC	1 cut(s)	720
BbsI	GAAGAC	1 cut(s)	834
BbvI	GCAGC	1 cut(s)	967
BccI	CCATC	3 cut(s)	395, 511, 732
BciT130I	CCWGG	2 cut(s)	611, 777
BciVI	GTATCC	1 cut(s)	159
BclI	TGATCA	1 cut(s)	27
BcnI	CCSGG	1 cut(s)	729
BcoDI	GTCTC	4 cut(s)	84, 213, 599, 882
BfmI	CTRYAG	1 cut(s)	903
BfoI	RGCGCY	1 cut(s)	724
BfuI	GTATCC	1 cut(s)	159
BglII	AGATCT	1 cut(s)	198
BisI	GCNGC	2 cut(s)	981, 993
BlsI	GCNGC	2 cut(s)	982, 994
Bme1390I	CCNGG	3 cut(s)	611, 729, 777
BmgT120I	GGNCC	1 cut(s)	507
BmiI	GGNNCC	3 cut(s)	48, 722, 781
BmrFI	CCNGG	3 cut(s)	611, 729, 777
BmsI	GCATC	3 cut(s)	44, 206, 253
BpiI	GAAGAC	1 cut(s)	834
BplI	GAGNNNNNCTC	2 cut(s)	439, 471
BpmI	CTGGAG	2 cut(s)	234, 593
BpuEI	CTTGAG	2 cut(s)	195, 223
BpuMI	CCSGG	1 cut(s)	729
Bsa29I	ATCGAT	1 cut(s)	378
BsaAI	YACGTR	2 cut(s)	67, 97
BsaHI	GRCGYC	2 cut(s)	721, 831
BsaI	GGTCTC	1 cut(s)	213
BsaJI	CCNNGG	2 cut(s)	728, 788
BsaWI	WCCGGW	2 cut(s)	679, 688
BsaXI	ACNNNNNCTCC	2 cut(s)	81, 111
Bsc4I	CCNNNNNNNGG	1 cut(s)	789
Bse118I	RCCGGY	2 cut(s)	551, 679
Bse21I	CCTNAGG	1 cut(s)	51
BseBI	CCWGG	2 cut(s)	611, 777
BseCI	ATCGAT	1 cut(s)	378
BseDI	CCNNGG	2 cut(s)	728, 788
BseGI	GGATG	4 cut(s)	35, 221, 244, 724
BseLI	CCNNNNNNNGG	1 cut(s)	789
BseMII	CTCAG	1 cut(s)	483
BseRI	GAGGAG	2 cut(s)	447, 519
BseXI	GCAGC	1 cut(s)	967
BsgI	GTGCAG	1 cut(s)	966
Bsh1285I	CGRYCG	1 cut(s)	471
BshFI	GGCC	1 cut(s)	508
BshNI	GGYRCC	1 cut(s)	720
BshTI	ACCGGT	1 cut(s)	679
BshVI	ATCGAT	1 cut(s)	378
BsiEI	CGRYCG	1 cut(s)	471
BsiSI	CCGG	4 cut(s)	552, 680, 689, 728
BslI	CCNNNNNNNGG	1 cut(s)	789
BsmAI	GTCTC	4 cut(s)	84, 213, 599, 882
BsnI	GGCC	1 cut(s)	508
Bso31I	GGTCTC	1 cut(s)	213
Bsp143I	GATC	6 cut(s)	27, 198, 231, 339, 468, 779
Bsp19I	CCATGG	1 cut(s)	788
BspACI	CCGC	4 cut(s)	130, 510, 635, 993
BspANI	GGCC	1 cut(s)	508
BspCNI	CTCAG	1 cut(s)	484
BspDI	ATCGAT	1 cut(s)	378
BspLI	GGNNCC	3 cut(s)	48, 722, 781
BspMAI	CTGCAG	1 cut(s)	907
BspPI	GGATC	2 cut(s)	774, 787
BspT107I	GGYRCC	1 cut(s)	720
BspTNI	GGTCTC	1 cut(s)	213
BsrFI	RCCGGY	2 cut(s)	551, 679
BssAI	RCCGGY	2 cut(s)	551, 679
BssECI	CCNNGG	2 cut(s)	728, 788
BssMI	GATC	6 cut(s)	27, 198, 231, 339, 468, 779
BssNAI	GTATAC	1 cut(s)	694
BssNI	GRCGYC	2 cut(s)	721, 831
BssT1I	CCWWGG	1 cut(s)	788
Bst1107I	GTATAC	1 cut(s)	694
Bst2UI	CCWGG	2 cut(s)	611, 777
Bst4CI	ACNGT	2 cut(s)	770, 922
Bst6I	CTCTTC	1 cut(s)	318
BstACI	GRCGYC	2 cut(s)	721, 831
BstAPI	GCANNNNNTGC	1 cut(s)	989
BstBAI	YACGTR	2 cut(s)	67, 97
BstC8I	GCNNGC	1 cut(s)	510
BstDEI	CTNAG	2 cut(s)	51, 492
BstDSI	CCRYGG	1 cut(s)	788
BstEII	GGTNACC	1 cut(s)	949
BstF5I	GGATG	4 cut(s)	35, 221, 244, 724
BstH2I	RGCGCY	1 cut(s)	724
BstHHI	GCGC	1 cut(s)	723
BstKTI	GATC	6 cut(s)	30, 201, 234, 342, 471, 782
BstMAI	GTCTC	4 cut(s)	84, 213, 599, 882
BstMBI	GATC	6 cut(s)	27, 198, 231, 339, 468, 779
BstMCI	CGRYCG	1 cut(s)	471
BstMWI	GCNNNNNNNGC	1 cut(s)	989
BstNI	CCWGG	2 cut(s)	611, 777
BstPI	GGTNACC	1 cut(s)	949
BstSCI	CCNGG	3 cut(s)	609, 727, 775
BstSFI	CTRYAG	1 cut(s)	903
BstV1I	GCAGC	1 cut(s)	967
BstV2I	GAAGAC	1 cut(s)	834
BstX2I	RGATCY	2 cut(s)	198, 779
BstYI	RGATCY	2 cut(s)	198, 779
BstZ17I	GTATAC	1 cut(s)	694
Bsu15I	ATCGAT	1 cut(s)	378
Bsu36I	CCTNAGG	1 cut(s)	51
BsuI	GTATCC	1 cut(s)	159
BsuRI	GGCC	1 cut(s)	508
BsuTUI	ATCGAT	1 cut(s)	378
BtgI	CCRYGG	1 cut(s)	788
BtsCI	GGATG	4 cut(s)	35, 221, 244, 724
Cac8I	GCNNGC	1 cut(s)	510
CfoI	GCGC	1 cut(s)	723
Cfr10I	RCCGGY	2 cut(s)	551, 679
Cfr13I	GGNCC	1 cut(s)	507
ClaI	ATCGAT	1 cut(s)	378
CseI	GACGC	1 cut(s)	359
Csp6I	GTAC	2 cut(s)	328, 796
CspAI	ACCGGT	1 cut(s)	679
CviAII	CATG	5 cut(s)	17, 25, 413, 789, 817
CviQI	GTAC	2 cut(s)	328, 796
DdeI	CTNAG	2 cut(s)	51, 492
DinI	GGCGCC	1 cut(s)	722
DpnI	GATC	6 cut(s)	29, 200, 233, 341, 470, 781
DpnII	GATC	6 cut(s)	27, 198, 231, 339, 468, 779
DraI	TTTAAA	2 cut(s)	676, 889
Eam1104I	CTCTTC	1 cut(s)	318
EarI	CTCTTC	1 cut(s)	318
Eco130I	CCWWGG	1 cut(s)	788
Eco31I	GGTCTC	1 cut(s)	213
Eco32I	GATATC	1 cut(s)	862
Eco57I	CTGAAG	2 cut(s)	204, 584
Eco81I	CCTNAGG	1 cut(s)	51
Eco91I	GGTNACC	1 cut(s)	949
EcoO65I	GGTNACC	1 cut(s)	949
EcoRII	CCWGG	2 cut(s)	609, 775
EcoRV	GATATC	1 cut(s)	862
EcoT14I	CCWWGG	1 cut(s)	788
EcoT22I	ATGCAT	3 cut(s)	37, 221, 268
EgeI	GGCGCC	1 cut(s)	722
EheI	GGCGCC	1 cut(s)	722
ErhI	CCWWGG	1 cut(s)	788
FaeI	CATG	5 cut(s)	20, 28, 416, 792, 820
FalI	AAGNNNNNCTT	4 cut(s)	725, 757, 948, 980
FatI	CATG	5 cut(s)	16, 24, 412, 788, 816
FauI	CCCGC	1 cut(s)	517
FbaI	TGATCA	1 cut(s)	27
FblI	GTMKAC	1 cut(s)	693
Fnu4HI	GCNGC	2 cut(s)	981, 993
FokI	GGATG	4 cut(s)	22, 228, 231, 711
Fsp4HI	GCNGC	2 cut(s)	981, 993
GlaI	GCGC	1 cut(s)	722
GluI	GCNGC	2 cut(s)	981, 993
GsuI	CTGGAG	2 cut(s)	234, 593
HaeII	RGCGCY	1 cut(s)	724
HaeIII	GGCC	1 cut(s)	508
HapII	CCGG	4 cut(s)	552, 680, 689, 728
HgaI	GACGC	1 cut(s)	359
HhaI	GCGC	1 cut(s)	723
Hin1I	GRCGYC	2 cut(s)	721, 831
Hin1II	CATG	5 cut(s)	20, 28, 416, 792, 820
Hin6I	GCGC	1 cut(s)	721
HinP1I	GCGC	1 cut(s)	721
HincII	GTYRAC	1 cut(s)	739
HindII	GTYRAC	1 cut(s)	739
HinfI	GANTC	4 cut(s)	521, 592, 875, 929
HpaII	CCGG	4 cut(s)	552, 680, 689, 728
Hpy166II	GTNNAC	6 cut(s)	22, 694, 739, 763, 773, 798
Hpy188I	TCNGA	2 cut(s)	40, 603
Hpy188III	TCNNGA	4 cut(s)	202, 251, 491, 881
Hpy8I	GTNNAC	6 cut(s)	22, 694, 739, 763, 773, 798
HpyAV	CCTTC	8 cut(s)	37, 94, 127, 490, 608, 661, 727, 996
HpyCH4III	ACNGT	2 cut(s)	770, 922
HpyCH4IV	ACGT	5 cut(s)	66, 71, 96, 584, 831
HpyCH4V	TGCA	6 cut(s)	35, 219, 266, 397, 905, 983
HpyF10VI	GCNNNNNNNGC	1 cut(s)	989
HpyF3I	CTNAG	2 cut(s)	51, 492
HpySE526I	ACGT	5 cut(s)	66, 71, 96, 584, 831
Hsp92I	GRCGYC	2 cut(s)	721, 831
Hsp92II	CATG	5 cut(s)	20, 28, 416, 792, 820
HspAI	GCGC	1 cut(s)	721
KasI	GGCGCC	1 cut(s)	720
Ksp22I	TGATCA	1 cut(s)	27
Kzo9I	GATC	6 cut(s)	27, 198, 231, 339, 468, 779
LmnI	GCTCC	3 cut(s)	52, 532, 637
Lsp1109I	GCAGC	1 cut(s)	967
LweI	GCATC	3 cut(s)	44, 206, 253
MaeII	ACGT	5 cut(s)	66, 71, 96, 584, 831
MaeIII	GTNAC	5 cut(s)	67, 168, 449, 613, 949
MalI	GATC	6 cut(s)	29, 200, 233, 341, 470, 781
MboI	GATC	6 cut(s)	27, 198, 231, 339, 468, 779
MboII	GAAGA	4 cut(s)	197, 335, 818, 839
MflI	RGATCY	2 cut(s)	198, 779
MluCI	AATT	4 cut(s)	309, 316, 843, 936
Mly113I	GGCGCC	1 cut(s)	721
MlyI	GAGTC	2 cut(s)	601, 884
Mph1103I	ATGCAT	3 cut(s)	37, 221, 268
MseI	TTAA	5 cut(s)	291, 675, 842, 846, 888
MspI	CCGG	4 cut(s)	552, 680, 689, 728
MspR9I	CCNGG	3 cut(s)	611, 729, 777
MvaI	CCWGG	2 cut(s)	611, 777
MwoI	GCNNNNNNNGC	1 cut(s)	989
NarI	GGCGCC	1 cut(s)	721
NciI	CCSGG	1 cut(s)	729
NcoI	CCATGG	1 cut(s)	788
NdeII	GATC	6 cut(s)	27, 198, 231, 339, 468, 779
NlaIII	CATG	5 cut(s)	20, 28, 416, 792, 820
NlaIV	GGNNCC	3 cut(s)	48, 722, 781
NmeAIII	GCCGAG	1 cut(s)	538
NmuCI	GTSAC	2 cut(s)	67, 613
NsiI	ATGCAT	3 cut(s)	37, 221, 268
PacI	TTAATTAA	1 cut(s)	846
PfeI	GAWTC	2 cut(s)	521, 929
PflMI	CCANNNNNTGG	1 cut(s)	789
PinAI	ACCGGT	1 cut(s)	679
PkrI	GCNGC	2 cut(s)	982, 994
Ple19I	CGATCG	1 cut(s)	471
PleI	GAGTC	2 cut(s)	600, 883
PluTI	GGCGCC	1 cut(s)	724
PpsI	GAGTC	2 cut(s)	600, 883
Ppu21I	YACGTR	2 cut(s)	67, 97
Psp6I	CCWGG	2 cut(s)	609, 775
PspEI	GGTNACC	1 cut(s)	949
PspGI	CCWGG	2 cut(s)	609, 775
PspN4I	GGNNCC	3 cut(s)	48, 722, 781
PspPI	GGNCC	1 cut(s)	507
PstI	CTGCAG	1 cut(s)	907
PsuI	RGATCY	2 cut(s)	198, 779
PvuI	CGATCG	1 cut(s)	471
RsaI	GTAC	2 cut(s)	329, 797
RsaNI	GTAC	2 cut(s)	328, 796
SaqAI	TTAA	5 cut(s)	291, 675, 842, 846, 888
SatI	GCNGC	2 cut(s)	981, 993
Sau3AI	GATC	6 cut(s)	27, 198, 231, 339, 468, 779
Sau96I	GGNCC	1 cut(s)	507
SchI	GAGTC	2 cut(s)	601, 884
ScrFI	CCNGG	3 cut(s)	611, 729, 777
SfaNI	GCATC	3 cut(s)	44, 206, 253
SfcI	CTRYAG	1 cut(s)	903
SfoI	GGCGCC	1 cut(s)	722
SmlI	CTYRAG	2 cut(s)	202, 210
SmoI	CTYRAG	2 cut(s)	202, 210
Sse9I	AATT	4 cut(s)	309, 316, 843, 936
SsiI	CCGC	4 cut(s)	130, 510, 635, 993
SspDI	GGCGCC	1 cut(s)	720
SspI	AATATT	1 cut(s)	485
StyD4I	CCNGG	3 cut(s)	609, 727, 775
StyI	CCWWGG	1 cut(s)	788
TaaI	ACNGT	2 cut(s)	770, 922
TaiI	ACGT	5 cut(s)	69, 74, 99, 587, 834
TaqI	TCGA	3 cut(s)	234, 378, 467
TasI	AATT	4 cut(s)	309, 316, 843, 936
TatI	WGTACW	1 cut(s)	327
TauI	GCSGC	1 cut(s)	995
TfiI	GAWTC	2 cut(s)	521, 929
Tru1I	TTAA	5 cut(s)	291, 675, 842, 846, 888
Tru9I	TTAA	5 cut(s)	291, 675, 842, 846, 888
TseFI	GTSAC	2 cut(s)	67, 613
TseI	GCWGC	1 cut(s)	980
Tsp45I	GTSAC	2 cut(s)	67, 613
TspDTI	ATGAA	1 cut(s)	233
Van91I	CCANNNNNTGG	1 cut(s)	789
XapI	RAATTY	2 cut(s)	309, 316
XmiI	GTMKAC	1 cut(s)	693
ZraI	GACGTC	1 cut(s)	832
Zsp2I	ATGCAT	3 cut(s)	37, 221, 268

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.