RchiOBHm_Chr6g0293551

Belongs to the glycosyltransferase 8 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
6
OG0001700
Physical Location & Seq
Reverse (-)
56197775 .. 56199484
1710 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ26340

Sequence Viewer

Length: 951 bp
ATGTGTTCCATTGCAATGGATGTTCCTACTGTGAACTTGGCTAGCAAAGCCTATGTTACTTTTTTGGCAGGCAACAAAGACTATGTGAAGGGAGTTGTGGGTTTGGCCAAGGGCTTGAGAAAGGCCAAATCCCAATACCCACTTGTTGTGGCGGTGCTTCCAGATGTCCCAGAGGAGCACCGGAAGATTCTCGAGTCTCAGGGCTGCATTGTCCGGGACATTGAGCCTGTGTACCCTCCGGAAAATCACCAAGCCGAGTTTGCCATGGCATATTATGTCATCAACTATTCAAAGCTTCGGATTTTCAATTTTGTGGAGTATAGCAAGATGATATACTTGGACGGAGACATACAAGTCTTTGACAACATTGATCACCTCTTTCACCTCCCGGATGGGTATTTCTATGCTGTCATGGATTGTTTCTGTGAAAAAACATGGAGTCACACTCCTCAAAGTGAGATCGGATATTGCCAACAATGTCCGGAAAAGGTTCAGTGGCCTGCTGAGTTAGGATCTCCACCCGCACCTTACTTCAACGCTGGCATGTTCGTCTATGAGCCTAAGCTCTCCACTTACAATAACCTATTGACATTCCTCAAAAATACTCCTCCCACTCCTTTTGCTGAGCAAGACTTGTTGAACTTCTTCTTTAGGGATGTCTACAAGCCTATCCCTTCAGAGTACAACTTCATTCTTGCCATGTTATGGCGACATCCTGAGAATGTAAAGATTGATGCTCTGAAAGTTGTTCACTATTGTGCTGCGGGATCAAAGCCATGGAGGTATACAGGAGAGGAGGAGAACATGGAAAGAGAAGACATAAAGATGCTGGTGAAGAAGTGGTGGGACATTTACGATGACAGGTCGTTGGATTTGAAGAAGGTCCCGGTTGCTAGCTTGTTTGATCCGGTGATTGATGGTGAAGAAAGAAGTGCTCCTTCGGCTGCCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00052 map00052
Pfam Domains
Protein Families
Glyco_transf_8

Protein Analysis

316

Amino Acids

36.36

Weight (kDa)

5.26

Isoelectric Point (pI)

45.14

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Glyco_transf_8 PF01501 20 - 263 3.7e-45 Glycosyl transferase family 8
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 353
AccB7I CCANNNNNTGG 1 cut(s) 705
AccI GTMKAC 2 cut(s) 660, 785
AccIII TCCGGA 2 cut(s) 238, 481
AciI CCGC 3 cut(s) 152, 522, 764
AclWI GGATC 3 cut(s) 520, 775, 899
AcoI YGGCCR 1 cut(s) 105
AcuI CTGAAG 1 cut(s) 660
AfaI GTAC 2 cut(s) 233, 683
AfiI CCNNNNNNNGG 1 cut(s) 705
AgsI TTSAA 5 cut(s) 291, 307, 535, 640, 877
AleI CACNNNNGTG 1 cut(s) 756
AluBI AGCT 3 cut(s) 295, 565, 897
AluI AGCT 3 cut(s) 295, 565, 897
Alw21I GWGCWC 2 cut(s) 180, 937
Alw26I GTCTC 2 cut(s) 201, 339
AlwI GGATC 3 cut(s) 520, 775, 899
Ama87I CYCGRG 1 cut(s) 191
Aor13HI TCCGGA 2 cut(s) 238, 481
AoxI GGCC 3 cut(s) 105, 123, 497
ApeKI GCWGC 3 cut(s) 204, 761, 944
Asp700I GAANNNNTTC 2 cut(s) 489, 644
AspS9I GGNCC 1 cut(s) 883
AsuC2I CCSGG 3 cut(s) 215, 389, 887
AsuHPI GGTGA 6 cut(s) 239, 365, 374, 844, 922, 932
AsuNHI GCTAGC 2 cut(s) 41, 893
AvaI CYCGRG 1 cut(s) 191
AvaII GGWCC 1 cut(s) 883
BalI TGGCCA 1 cut(s) 107
BbsI GAAGAC 1 cut(s) 822
Bbv12I GWGCWC 2 cut(s) 180, 937
BbvI GCAGC 3 cut(s) 191, 748, 931
BccI CCATC 2 cut(s) 386, 911
BclI TGATCA 1 cut(s) 370
BcnI CCSGG 3 cut(s) 215, 389, 887
BcoDI GTCTC 2 cut(s) 201, 339
BfaI CTAG 2 cut(s) 42, 894
BisI GCNGC 3 cut(s) 205, 762, 945
BlpI GCTNAGC 1 cut(s) 624
BlsI GCNGC 3 cut(s) 206, 763, 946
Bme1390I CCNGG 3 cut(s) 215, 389, 887
Bme18I GGWCC 1 cut(s) 883
BmeT110I CYCGRG 1 cut(s) 191
BmgT120I GGNCC 1 cut(s) 883
BmiI GGNNCC 1 cut(s) 885
BmrFI CCNGG 3 cut(s) 215, 389, 887
BmsI GCATC 2 cut(s) 724, 816
BmtI GCTAGC 2 cut(s) 45, 897
BpiI GAAGAC 1 cut(s) 822
BplI GAGNNNNNCTC 2 cut(s) 430, 462
Bpu10I CCTNAGC 1 cut(s) 561
Bpu1102I GCTNAGC 1 cut(s) 624
BpuEI CTTGAG 1 cut(s) 136
BpuMI CCSGG 3 cut(s) 215, 389, 887
BsaJI CCNNGG 3 cut(s) 108, 264, 776
BsaWI WCCGGW 4 cut(s) 180, 238, 481, 907
Bsc4I CCNNNNNNNGG 1 cut(s) 705
Bse3DI GCAATG 2 cut(s) 9, 21
BseAI TCCGGA 2 cut(s) 238, 481
BseDI CCNNGG 3 cut(s) 108, 264, 776
BseGI GGATG 4 cut(s) 25, 397, 661, 712
BseLI CCNNNNNNNGG 1 cut(s) 705
BseMI GCAATG 2 cut(s) 9, 21
BseMII CTCAG 4 cut(s) 212, 495, 615, 708
BseRI GAGGAG 5 cut(s) 188, 438, 597, 809, 812
BseXI GCAGC 3 cut(s) 191, 748, 931
BshFI GGCC 3 cut(s) 107, 125, 499
BsiHKAI GWGCWC 2 cut(s) 180, 937
BsiHKCI CYCGRG 1 cut(s) 191
BsiSI CCGG 7 cut(s) 181, 214, 239, 389, 482, 887, 908
BslFI GGGAC 4 cut(s) 152, 230, 860, 869
BslI CCNNNNNNNGG 1 cut(s) 705
BsmAI GTCTC 2 cut(s) 201, 339
BsmFI GGGAC 4 cut(s) 152, 230, 860, 869
BsnI GGCC 3 cut(s) 107, 125, 499
BsoBI CYCGRG 1 cut(s) 191
Bsp1286I GDGCHC 2 cut(s) 180, 937
Bsp13I TCCGGA 2 cut(s) 238, 481
Bsp143I GATC 5 cut(s) 370, 459, 512, 767, 904
Bsp1720I GCTNAGC 1 cut(s) 624
Bsp19I CCATGG 2 cut(s) 264, 776
BspACI CCGC 3 cut(s) 152, 522, 764
BspANI GGCC 3 cut(s) 107, 125, 499
BspCNI CTCAG 4 cut(s) 211, 496, 616, 709
BspEI TCCGGA 2 cut(s) 238, 481
BspLI GGNNCC 1 cut(s) 885
BspOI GCTAGC 2 cut(s) 45, 897
BspPI GGATC 3 cut(s) 520, 775, 899
BsrDI GCAATG 2 cut(s) 9, 21
BssECI CCNNGG 3 cut(s) 108, 264, 776
BssMI GATC 5 cut(s) 370, 459, 512, 767, 904
BssNAI GTATAC 1 cut(s) 786
BssT1I CCWWGG 3 cut(s) 108, 264, 776
Bst1107I GTATAC 1 cut(s) 786
Bst4CI ACNGT 1 cut(s) 31
BstC8I GCNNGC 5 cut(s) 43, 70, 501, 541, 895
BstDEI CTNAG 5 cut(s) 198, 504, 561, 624, 717
BstDSI CCRYGG 2 cut(s) 264, 776
BstF5I GGATG 4 cut(s) 25, 397, 661, 712
BstKTI GATC 5 cut(s) 373, 462, 515, 770, 907
BstMAI GTCTC 2 cut(s) 201, 339
BstMBI GATC 5 cut(s) 370, 459, 512, 767, 904
BstMWI GCNNNNNNNGC 3 cut(s) 47, 260, 941
BstNSI RCATGY 1 cut(s) 547
BstSCI CCNGG 3 cut(s) 213, 387, 885
BstV1I GCAGC 3 cut(s) 191, 748, 931
BstV2I GAAGAC 1 cut(s) 822
BstX2I RGATCY 1 cut(s) 512
BstXI CCANNNNNNTGG 1 cut(s) 16
BstYI RGATCY 1 cut(s) 512
BstZ17I GTATAC 1 cut(s) 786
BsuRI GGCC 3 cut(s) 107, 125, 499
BtgI CCRYGG 2 cut(s) 264, 776
BtsCI GGATG 4 cut(s) 25, 397, 661, 712
BtsIMutI CAGTG 1 cut(s) 500
Cac8I GCNNGC 5 cut(s) 43, 70, 501, 541, 895
Cfr13I GGNCC 1 cut(s) 883
Csp6I GTAC 2 cut(s) 232, 682
CspCI CAANNNNNGTGG 2 cut(s) 601, 636
CviAII CATG 7 cut(s) 265, 412, 435, 544, 700, 777, 805
CviQI GTAC 2 cut(s) 232, 682
DdeI CTNAG 5 cut(s) 198, 504, 561, 624, 717
DpnI GATC 5 cut(s) 372, 461, 514, 769, 906
DpnII GATC 5 cut(s) 370, 459, 512, 767, 904
DrdI GACNNNNNNGTC 1 cut(s) 353
DseDI GACNNNNNNGTC 1 cut(s) 353
EaeI YGGCCR 1 cut(s) 105
Eco130I CCWWGG 3 cut(s) 108, 264, 776
Eco47I GGWCC 1 cut(s) 883
Eco57I CTGAAG 1 cut(s) 660
Eco88I CYCGRG 1 cut(s) 191
EcoO109I RGGNCCY 1 cut(s) 883
EcoT14I CCWWGG 3 cut(s) 108, 264, 776
ErhI CCWWGG 3 cut(s) 108, 264, 776
FaeI CATG 7 cut(s) 268, 415, 438, 547, 703, 780, 808
FalI AAGNNNNNCTT 1 cut(s) 922
FaqI GGGAC 4 cut(s) 152, 230, 860, 869
FatI CATG 7 cut(s) 264, 411, 434, 543, 699, 776, 804
FauI CCCGC 2 cut(s) 529, 757
FbaI TGATCA 1 cut(s) 370
FblI GTMKAC 2 cut(s) 660, 785
Fnu4HI GCNGC 3 cut(s) 205, 762, 945
FokI GGATG 4 cut(s) 32, 404, 668, 699
Fsp4HI GCNGC 3 cut(s) 205, 762, 945
FspBI CTAG 2 cut(s) 42, 894
GluI GCNGC 3 cut(s) 205, 762, 945
HaeIII GGCC 3 cut(s) 107, 125, 499
HapII CCGG 7 cut(s) 181, 214, 239, 389, 482, 887, 908
Hin1II CATG 7 cut(s) 268, 415, 438, 547, 703, 780, 808
HindIII AAGCTT 1 cut(s) 293
HinfI GANTC 3 cut(s) 187, 194, 439
HpaII CCGG 7 cut(s) 181, 214, 239, 389, 482, 887, 908
HphI GGTGA 6 cut(s) 239, 365, 374, 844, 922, 932
Hpy166II GTNNAC 5 cut(s) 34, 232, 661, 751, 786
Hpy188I TCNGA 4 cut(s) 300, 464, 679, 741
Hpy188III TCNNGA 5 cut(s) 161, 191, 239, 482, 716
Hpy8I GTNNAC 5 cut(s) 34, 232, 661, 751, 786
HpyAV CCTTC 4 cut(s) 82, 684, 874, 948
HpyCH4III ACNGT 1 cut(s) 31
HpyCH4V TGCA 2 cut(s) 14, 207
HpyF10VI GCNNNNNNNGC 3 cut(s) 47, 260, 941
HpyF3I CTNAG 5 cut(s) 198, 504, 561, 624, 717
Hsp92II CATG 7 cut(s) 268, 415, 438, 547, 703, 780, 808
Kpn2I TCCGGA 2 cut(s) 238, 481
Ksp22I TGATCA 1 cut(s) 370
Kzo9I GATC 5 cut(s) 370, 459, 512, 767, 904
LmnI GCTCC 2 cut(s) 175, 940
Lsp1109I GCAGC 3 cut(s) 191, 748, 931
LweI GCATC 2 cut(s) 724, 816
MaeI CTAG 2 cut(s) 42, 894
MaeIII GTNAC 2 cut(s) 55, 440
MalI GATC 5 cut(s) 372, 461, 514, 769, 906
MboI GATC 5 cut(s) 370, 459, 512, 767, 904
MboII GAAGA 6 cut(s) 196, 637, 827, 847, 889, 935
MflI RGATCY 1 cut(s) 512
MhlI GDGCHC 2 cut(s) 180, 937
MlsI TGGCCA 1 cut(s) 107
MluCI AATT 1 cut(s) 307
MluNI TGGCCA 1 cut(s) 107
MlyI GAGTC 2 cut(s) 203, 448
MmeI TCCRAC 1 cut(s) 849
Mox20I TGGCCA 1 cut(s) 107
MroI TCCGGA 2 cut(s) 238, 481
MroXI GAANNNNTTC 2 cut(s) 489, 644
MscI TGGCCA 1 cut(s) 107
MslI CAYNNNNRTG 3 cut(s) 14, 756, 824
Msp20I TGGCCA 1 cut(s) 107
MspI CCGG 7 cut(s) 181, 214, 239, 389, 482, 887, 908
MspR9I CCNGG 3 cut(s) 215, 389, 887
MwoI GCNNNNNNNGC 3 cut(s) 47, 260, 941
NciI CCSGG 3 cut(s) 215, 389, 887
NcoI CCATGG 2 cut(s) 264, 776
NdeII GATC 5 cut(s) 370, 459, 512, 767, 904
NheI GCTAGC 2 cut(s) 41, 893
NlaIII CATG 7 cut(s) 268, 415, 438, 547, 703, 780, 808
NlaIV GGNNCC 1 cut(s) 885
NmeAIII GCCGAG 1 cut(s) 280
NmuCI GTSAC 1 cut(s) 440
NspI RCATGY 1 cut(s) 547
OliI CACNNNNGTG 1 cut(s) 756
PaeR7I CTCGAG 1 cut(s) 191
PdmI GAANNNNTTC 2 cut(s) 489, 644
PfeI GAWTC 1 cut(s) 187
PflMI CCANNNNNTGG 1 cut(s) 705
PfoI TCCNGGA 2 cut(s) 213, 387
PkrI GCNGC 3 cut(s) 206, 763, 946
PleI GAGTC 2 cut(s) 202, 447
PpsI GAGTC 2 cut(s) 202, 447
PpuMI RGGWCCY 1 cut(s) 883
Psp5II RGGWCCY 1 cut(s) 883
PspN4I GGNNCC 1 cut(s) 885
PspPI GGNCC 1 cut(s) 883
PspPPI RGGWCCY 1 cut(s) 883
PsuI RGATCY 1 cut(s) 512
RsaI GTAC 2 cut(s) 233, 683
RsaNI GTAC 2 cut(s) 232, 682
RseI CAYNNNNRTG 3 cut(s) 14, 756, 824
SatI GCNGC 3 cut(s) 205, 762, 945
Sau3AI GATC 5 cut(s) 370, 459, 512, 767, 904
Sau96I GGNCC 1 cut(s) 883
SchI GAGTC 2 cut(s) 203, 448
ScrFI CCNGG 3 cut(s) 215, 389, 887
SduI GDGCHC 2 cut(s) 180, 937
SfaNI GCATC 2 cut(s) 724, 816
Sfr274I CTCGAG 1 cut(s) 191
SinI GGWCC 1 cut(s) 883
SlaI CTCGAG 1 cut(s) 191
SmiMI CAYNNNNRTG 3 cut(s) 14, 756, 824
SmlI CTYRAG 2 cut(s) 115, 191
SmoI CTYRAG 2 cut(s) 115, 191
Sse9I AATT 1 cut(s) 307
SsiI CCGC 3 cut(s) 152, 522, 764
SspMI CTAG 2 cut(s) 42, 894
StyD4I CCNGG 3 cut(s) 213, 387, 885
StyI CCWWGG 3 cut(s) 108, 264, 776
TaaI ACNGT 1 cut(s) 31
TaqI TCGA 1 cut(s) 192
TasI AATT 1 cut(s) 307
TatI WGTACW 1 cut(s) 681
TfiI GAWTC 1 cut(s) 187
TscAI CASTG 1 cut(s) 500
TseFI GTSAC 1 cut(s) 440
TseI GCWGC 3 cut(s) 204, 761, 944
Tsp45I GTSAC 1 cut(s) 440
TspDTI ATGAA 1 cut(s) 679
TspGWI ACGGA 1 cut(s) 357
TspRI CASTG 1 cut(s) 500
Van91I CCANNNNNTGG 1 cut(s) 705
VpaK11BI GGWCC 1 cut(s) 883
XceI RCATGY 1 cut(s) 547
XhoI CTCGAG 1 cut(s) 191
XmiI GTMKAC 2 cut(s) 660, 785
XmnI GAANNNNTTC 2 cut(s) 489, 644
XspI CTAG 2 cut(s) 42, 894
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.