Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr16

Orthogroup ID

OG0001700

Physical Location & Seq

Genomic Coordinates Reverse (-)

5335155 .. 5335870

Gene Structure 716 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom16g08090.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 483 bp

ATGGGCTCTCCTCCTCCGCTCTACTTCAACGCCGGCATGTTCGTGTTCGAGCCTAGCCGCTTGACATACGACGACCTTCTTCAGACTCTCAAAGTCGTCCCACCCACCCCTTTCGCAGAACAAGATTTCTTGAACAAGTTCTTCCAAAAGACGTACAAACCAATCCCAAATATATACAACTTAGTTCTAGCCAATCTATGGCGCCACCCAGAGAACGTGCAGCTTGATCAAGTAAACGTAGTTCACTACTGTGCTGCTGGATCAAAACCGTGGAGGTATACCGGCAAGGAAGCTAACATGGACAGAGAGGACATCAAGGTGTTAGTGGCCAAATGGTGGGAAATTTACAACGAGGAGTCCCTGGATTTCAAGGCTGAAACCCCAGCAGCTGCGGAGGAAGAAACTTTCTCGAAGCCGTCGTCGATCATGGCTTCCATGCCGGAGCCTACCATTCCCTACATTCCTGCTCCATCTGTTGCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000271 GO:0003674 GO:0003824 GO:0005488 GO:0005536 GO:0005975 GO:0005976 GO:0005977 GO:0005978 GO:0005996 GO:0006012 GO:0006073 GO:0006091 GO:0006112 GO:0006950 GO:0006979 GO:0008150 GO:0008152 GO:0008194 GO:0008378 GO:0008466 GO:0009058 GO:0009059 GO:0009250 GO:0009987 GO:0015980 GO:0016051 GO:0016740 GO:0016757 GO:0016758 GO:0019318 GO:0030246 GO:0033692 GO:0034637 GO:0034645 GO:0035250 GO:0035251 GO:0036094 GO:0043170 GO:0044042 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044262 GO:0044264 GO:0044281 GO:0046527 GO:0047216 GO:0048029 GO:0050896 GO:0055114 GO:0071704 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00052 map00052

Pfam Domains

Protein Families

Glyco_transf_8

Protein Analysis

161

Amino Acids

18.29

Weight (kDa)

4.92

Isoelectric Point (pI)

53.18

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Glyco_transf_8	PF01501	3 - 94	2.6e-17	Glycosyl transferase family 8

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0001700)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G60450 AT1G60470
fragaria_vesca	FvH4_4g20790 FvH4_4g34160
malus_domestica	MD13G1093700.v1.1 MD13G1147700.v1.1 MD16G1095000.v1.1
prunus_persica	Prupe.1G111300_v2.0.a1 Prupe.1G251600_v2.0.a1 Prupe.8G258200_v2.0.a1
pyrus_communis	pycom13g08160 pycom13g12730 pycom16g08080 pycom16g08090 pycom16g12600
rosa_chinensis	RchiOBHm_Chr4g0426261 RchiOBHm_Chr4g0443671 RchiOBHm_Chr6g0293551
rosa_laevigata	RLG00000005903 RLG00000007308 RLG00000011942
rosa_multiflora	Rmu_co8279911.1_g000001 Rmu_sc0000730.1_g000037 Rmu_sc0001426.1_g000017 Rmu_sc0032866.1_g000001 Rmu_sc0036604.1_g000001
rosa_roxburghii	Rroxscaffold_5G00368270 Rroxscaffold_5G00384220
rosa_rugosa	Rorug04G0209900 Rorug06G0236400
rosa_samantha	Rh4AG266800 Rh4AG406100 Rh4BG272700 Rh4BG417100 Rh4CG286100 Rh4CG286400 Rh4CG431600 Rh4DG269100 Rh4DG269300 Rh4DG412700 Rh6AG349100 Rh6BG356500 Rh6CG363200 Rh6DG350100
rosa_wichuraiana	Rw4G023060 Rw4G023080 Rw4G034870 Rw6G030370

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	201
AccB7I	CCANNNNNTGG	2 cut(s)	198, 336
AccBSI	CCGCTC	1 cut(s)	19
AccI	GTMKAC	1 cut(s)	278
AciI	CCGC	3 cut(s)	17, 58, 392
AclWI	GGATC	1 cut(s)	268
AcoI	YGGCCR	1 cut(s)	327
AcsI	RAATTY	1 cut(s)	342
AcuI	CTGAAG	1 cut(s)	65
AcyI	GRCGYC	1 cut(s)	202
AfaI	GTAC	1 cut(s)	155
AfiI	CCNNNNNNNGG	2 cut(s)	198, 336
AgsI	TTSAA	3 cut(s)	28, 133, 370
AjnI	CCWGG	1 cut(s)	360
AleI	CACNNNNGTG	1 cut(s)	249
AluBI	AGCT	3 cut(s)	223, 293, 389
AluI	AGCT	3 cut(s)	223, 293, 389
AlwI	GGATC	1 cut(s)	268
AlwNI	CAGNNNCTG	1 cut(s)	389
AoxI	GGCC	1 cut(s)	327
ApeKI	GCWGC	4 cut(s)	220, 254, 386, 389
ApoI	RAATTY	1 cut(s)	342
ArsI	GACNNNNNNTTYG	2 cut(s)	404, 436
Asp700I	GAANNNNTTC	1 cut(s)	137
AspLEI	GCGC	1 cut(s)	204
BalI	TGGCCA	1 cut(s)	329
BanI	GGYRCC	1 cut(s)	201
BanII	GRGCYC	1 cut(s)	8
BbvI	GCAGC	4 cut(s)	232, 241, 376, 398
BccI	CCATC	1 cut(s)	478
BceAI	ACGGC	1 cut(s)	400
BciT130I	CCWGG	1 cut(s)	362
BclI	TGATCA	1 cut(s)	226
BfaI	CTAG	2 cut(s)	54, 188
BfoI	RGCGCY	1 cut(s)	205
BisI	GCNGC	5 cut(s)	58, 221, 255, 387, 390
BlsI	GCNGC	5 cut(s)	59, 222, 256, 388, 391
Bme1390I	CCNGG	1 cut(s)	362
BmiI	GGNNCC	2 cut(s)	203, 444
BmrFI	CCNGG	1 cut(s)	362
BsaHI	GRCGYC	1 cut(s)	202
BsaJI	CCNNGG	2 cut(s)	269, 360
Bsc4I	CCNNNNNNNGG	2 cut(s)	198, 336
Bse118I	RCCGGY	2 cut(s)	32, 281
BseBI	CCWGG	1 cut(s)	362
BseDI	CCNNGG	2 cut(s)	269, 360
BseLI	CCNNNNNNNGG	2 cut(s)	198, 336
BseRI	GAGGAG	1 cut(s)	368
BseXI	GCAGC	4 cut(s)	232, 241, 376, 398
BseYI	CCCAGC	1 cut(s)	382
BsgI	GTGCAG	1 cut(s)	239
BshFI	GGCC	1 cut(s)	329
BshNI	GGYRCC	1 cut(s)	201
BsiSI	CCGG	3 cut(s)	33, 282, 440
BslFI	GGGAC	2 cut(s)	83, 343
BslI	CCNNNNNNNGG	2 cut(s)	198, 336
BsmFI	GGGAC	2 cut(s)	83, 343
BsnI	GGCC	1 cut(s)	329
Bsp1286I	GDGCHC	1 cut(s)	8
Bsp143I	GATC	3 cut(s)	226, 260, 423
BspACI	CCGC	3 cut(s)	17, 58, 392
BspANI	GGCC	1 cut(s)	329
BspLI	GGNNCC	2 cut(s)	203, 444
BspPI	GGATC	1 cut(s)	268
BspT107I	GGYRCC	1 cut(s)	201
BsrBI	CCGCTC	1 cut(s)	19
BsrFI	RCCGGY	2 cut(s)	32, 281
BssAI	RCCGGY	2 cut(s)	32, 281
BssECI	CCNNGG	2 cut(s)	269, 360
BssMI	GATC	3 cut(s)	226, 260, 423
BssNAI	GTATAC	1 cut(s)	279
BssNI	GRCGYC	1 cut(s)	202
Bst1107I	GTATAC	1 cut(s)	279
Bst2UI	CCWGG	1 cut(s)	362
Bst4CI	ACNGT	2 cut(s)	251, 270
BstACI	GRCGYC	1 cut(s)	202
BstC8I	GCNNGC	1 cut(s)	34
BstDEI	CTNAG	1 cut(s)	181
BstDSI	CCRYGG	1 cut(s)	269
BstH2I	RGCGCY	1 cut(s)	205
BstHHI	GCGC	1 cut(s)	204
BstKTI	GATC	3 cut(s)	229, 263, 426
BstMBI	GATC	3 cut(s)	226, 260, 423
BstNI	CCWGG	1 cut(s)	362
BstNSI	RCATGY	1 cut(s)	40
BstSCI	CCNGG	1 cut(s)	360
BstV1I	GCAGC	4 cut(s)	232, 241, 376, 398
BstZ17I	GTATAC	1 cut(s)	279
BsuRI	GGCC	1 cut(s)	329
BtgI	CCRYGG	1 cut(s)	269
Cac8I	GCNNGC	1 cut(s)	34
CaiI	CAGNNNCTG	1 cut(s)	389
CfoI	GCGC	1 cut(s)	204
Cfr10I	RCCGGY	2 cut(s)	32, 281
Csp6I	GTAC	1 cut(s)	154
CviAII	CATG	4 cut(s)	37, 298, 427, 436
CviQI	GTAC	1 cut(s)	154
DdeI	CTNAG	1 cut(s)	181
DinI	GGCGCC	1 cut(s)	203
DpnI	GATC	3 cut(s)	228, 262, 425
DpnII	GATC	3 cut(s)	226, 260, 423
EaeI	YGGCCR	1 cut(s)	327
Eco24I	GRGCYC	1 cut(s)	8
Eco57I	CTGAAG	1 cut(s)	65
EcoRII	CCWGG	1 cut(s)	360
EcoT38I	GRGCYC	1 cut(s)	8
EgeI	GGCGCC	1 cut(s)	203
EheI	GGCGCC	1 cut(s)	203
FaeI	CATG	4 cut(s)	40, 301, 430, 439
FaiI	YATR	9 cut(s)	38, 67, 173, 175, 199, 279, 299, 428, 437
FaqI	GGGAC	2 cut(s)	83, 343
FatI	CATG	4 cut(s)	36, 297, 426, 435
FbaI	TGATCA	1 cut(s)	226
FblI	GTMKAC	1 cut(s)	278
Fnu4HI	GCNGC	5 cut(s)	58, 221, 255, 387, 390
FriOI	GRGCYC	1 cut(s)	8
Fsp4HI	GCNGC	5 cut(s)	58, 221, 255, 387, 390
FspBI	CTAG	2 cut(s)	54, 188
GlaI	GCGC	1 cut(s)	203
GluI	GCNGC	5 cut(s)	58, 221, 255, 387, 390
GsaI	CCCAGC	1 cut(s)	386
HaeII	RGCGCY	1 cut(s)	205
HaeIII	GGCC	1 cut(s)	329
HapII	CCGG	3 cut(s)	33, 282, 440
HhaI	GCGC	1 cut(s)	204
Hin1I	GRCGYC	1 cut(s)	202
Hin1II	CATG	4 cut(s)	40, 301, 430, 439
Hin6I	GCGC	1 cut(s)	202
HinP1I	GCGC	1 cut(s)	202
HinfI	GANTC	2 cut(s)	85, 356
HpaII	CCGG	3 cut(s)	33, 282, 440
Hpy166II	GTNNAC	3 cut(s)	235, 244, 279
Hpy188I	TCNGA	1 cut(s)	84
Hpy188III	TCNNGA	2 cut(s)	130, 409
Hpy8I	GTNNAC	3 cut(s)	235, 244, 279
Hpy99I	CGWCG	3 cut(s)	74, 421, 424
HpyAV	CCTTC	1 cut(s)	86
HpyCH4III	ACNGT	2 cut(s)	251, 270
HpyCH4IV	ACGT	3 cut(s)	152, 216, 237
HpyCH4V	TGCA	1 cut(s)	220
HpyF3I	CTNAG	1 cut(s)	181
HpySE526I	ACGT	3 cut(s)	152, 216, 237
Hsp92I	GRCGYC	1 cut(s)	202
Hsp92II	CATG	4 cut(s)	40, 301, 430, 439
HspAI	GCGC	1 cut(s)	202
KasI	GGCGCC	1 cut(s)	201
KroI	GCCGGC	1 cut(s)	32
KroNI	GCCGGC	1 cut(s)	34
Ksp22I	TGATCA	1 cut(s)	226
Kzo9I	GATC	3 cut(s)	226, 260, 423
LmnI	GCTCC	2 cut(s)	442, 472
LpnPI	CCDG	9 cut(s)	46, 222, 243, 295, 347, 374, 396, 453, 477
Lsp1109I	GCAGC	4 cut(s)	232, 241, 376, 398
MaeI	CTAG	2 cut(s)	54, 188
MaeII	ACGT	3 cut(s)	152, 216, 237
MalI	GATC	3 cut(s)	228, 262, 425
MbiI	CCGCTC	1 cut(s)	19
MboI	GATC	3 cut(s)	226, 260, 423
MboII	GAAGA	3 cut(s)	71, 133, 410
MhlI	GDGCHC	1 cut(s)	8
MlsI	TGGCCA	1 cut(s)	329
MluCI	AATT	1 cut(s)	342
MluNI	TGGCCA	1 cut(s)	329
Mly113I	GGCGCC	1 cut(s)	202
MlyI	GAGTC	2 cut(s)	79, 365
MnlI	CCTC	6 cut(s)	21, 24, 267, 301, 346, 388
Mox20I	TGGCCA	1 cut(s)	329
MroNI	GCCGGC	1 cut(s)	32
MroXI	GAANNNNTTC	1 cut(s)	137
MscI	TGGCCA	1 cut(s)	329
MslI	CAYNNNNRTG	3 cut(s)	41, 249, 317
Msp20I	TGGCCA	1 cut(s)	329
MspA1I	CMGCKG	1 cut(s)	389
MspI	CCGG	3 cut(s)	33, 282, 440
MspR9I	CCNGG	1 cut(s)	362
MvaI	CCWGG	1 cut(s)	362
NaeI	GCCGGC	1 cut(s)	34
NarI	GGCGCC	1 cut(s)	202
NdeII	GATC	3 cut(s)	226, 260, 423
NgoMIV	GCCGGC	1 cut(s)	32
NlaIII	CATG	4 cut(s)	40, 301, 430, 439
NlaIV	GGNNCC	2 cut(s)	203, 444
NspI	RCATGY	1 cut(s)	40
OliI	CACNNNNGTG	1 cut(s)	249
PcsI	WCGNNNNNNNCGW	1 cut(s)	416
PdiI	GCCGGC	1 cut(s)	34
PdmI	GAANNNNTTC	1 cut(s)	137
PflMI	CCANNNNNTGG	2 cut(s)	198, 336
PkrI	GCNGC	5 cut(s)	59, 222, 256, 388, 391
PleI	GAGTC	2 cut(s)	79, 364
PluTI	GGCGCC	1 cut(s)	205
PpsI	GAGTC	2 cut(s)	79, 364
Psp6I	CCWGG	1 cut(s)	360
PspFI	CCCAGC	1 cut(s)	382
PspGI	CCWGG	1 cut(s)	360
PspN4I	GGNNCC	2 cut(s)	203, 444
PsrI	GAACNNNNNNTAC	2 cut(s)	225, 257
PstNI	CAGNNNCTG	1 cut(s)	389
PvuII	CAGCTG	1 cut(s)	389
RsaI	GTAC	1 cut(s)	155
RsaNI	GTAC	1 cut(s)	154
RseI	CAYNNNNRTG	3 cut(s)	41, 249, 317
SatI	GCNGC	5 cut(s)	58, 221, 255, 387, 390
Sau3AI	GATC	3 cut(s)	226, 260, 423
SchI	GAGTC	2 cut(s)	79, 365
ScrFI	CCNGG	1 cut(s)	362
SduI	GDGCHC	1 cut(s)	8
SetI	ASST	9 cut(s)	78, 155, 219, 225, 240, 278, 295, 321, 391
SfoI	GGCGCC	1 cut(s)	203
SmiMI	CAYNNNNRTG	3 cut(s)	41, 249, 317
Sse9I	AATT	1 cut(s)	342
SsiI	CCGC	3 cut(s)	17, 58, 392
SspDI	GGCGCC	1 cut(s)	201
SspMI	CTAG	2 cut(s)	54, 188
StyD4I	CCNGG	1 cut(s)	360
TaaI	ACNGT	2 cut(s)	251, 270
TaiI	ACGT	3 cut(s)	155, 219, 240
TaqI	TCGA	3 cut(s)	48, 410, 422
TasI	AATT	1 cut(s)	342
TauI	GCSGC	1 cut(s)	60
TseI	GCWGC	4 cut(s)	220, 254, 386, 389
Van91I	CCANNNNNTGG	2 cut(s)	198, 336
XapI	RAATTY	1 cut(s)	342
XceI	RCATGY	1 cut(s)	40
XmiI	GTMKAC	1 cut(s)	278
XmnI	GAANNNNTTC	1 cut(s)	137
XspI	CTAG	2 cut(s)	54, 188

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.