Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0036604.1

Orthogroup ID

OG0001700

Physical Location & Seq

Genomic Coordinates Reverse (-)

1 .. 1435

Gene Structure 1435 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0036604.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 753 bp

atgtctcctccagaacagacaaacggagtaccaaagagagcatacgtgaccttcttggcgggcaacggggactatgtgaaaggtgtggttggtctggccaagggcctcagaaaggccaaatctgcctacccacttgtggtggccgtgttgccagatgttcccgaagagcaccttcagattcttgagtctcaggggtgcgttgtgcgcccgattgagccagtctaccctcctgagaaccggacccagttttccatggcttactatgtcatcaactactcaaagctccgtatttgggagtttgtggagtatgagaagctgatttacctggatggcgatatacaagtgtttgataacattgatcacctgtttgacatgcccaacggctacttctacgccgtgatggattgcttttgtgagaacacatggagtcactctcctcagtttaagatcggatactgccagcagtaccctgaaaaggtgcagtggccagcagacatgggctcgccgccaccaccttacttcaacgccggcatgtttgtctatgagcctggtcttccaacttaccatgatctgttagagaccgtcaaagtcaccactccttcctcatttgctgagcaggacttcttgaacatgtacttcaaggacatataccagcctatccctccggtgtacaaccttgtcttggcaatgctgtggcgccaccctgaaaatgttgaccttgacagagtgaaggttgttcattattgtgctgcg

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000271 GO:0000323 GO:0001775 GO:0002252 GO:0002263 GO:0002274 GO:0002275 GO:0002283 GO:0002366 GO:0002376 GO:0002443 GO:0002444 GO:0002446 GO:0003674 GO:0003824 GO:0005488 GO:0005536 GO:0005575 GO:0005576 GO:0005622 GO:0005623 GO:0005737 GO:0005764 GO:0005773 GO:0005775 GO:0005829 GO:0005975 GO:0005976 GO:0005977 GO:0005978 GO:0005996 GO:0006012 GO:0006073 GO:0006091 GO:0006112 GO:0006810 GO:0006887 GO:0006955 GO:0008150 GO:0008152 GO:0008194 GO:0008378 GO:0008466 GO:0009058 GO:0009059 GO:0009250 GO:0009987 GO:0012505 GO:0015980 GO:0016051 GO:0016192 GO:0016740 GO:0016757 GO:0016758 GO:0019318 GO:0030141 GO:0030246 GO:0031410 GO:0031974 GO:0031982 GO:0031983 GO:0032940 GO:0033692 GO:0034637 GO:0034645 GO:0034774 GO:0035250 GO:0035251 GO:0036094 GO:0036230 GO:0042119 GO:0043170 GO:0043202 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043299 GO:0043312 GO:0044042 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044262 GO:0044264 GO:0044281 GO:0044422 GO:0044424 GO:0044433 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0045055 GO:0045321 GO:0046527 GO:0046903 GO:0047216 GO:0048029 GO:0050896 GO:0051179 GO:0051234 GO:0055114 GO:0060205 GO:0070013 GO:0071704 GO:0097708 GO:0099503 GO:0101002 GO:1901576 GO:1904813

KEGG Pathways

Metabolic & Signaling

ko00052 map00052

Pfam Domains

Protein Families

Glyco_transf_8

Protein Analysis

251

Amino Acids

28.87

Weight (kDa)

5.02

Isoelectric Point (pI)

47.31

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001700)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G60450 AT1G60470
fragaria_vesca	FvH4_4g20790 FvH4_4g34160
malus_domestica	MD13G1093700.v1.1 MD13G1147700.v1.1 MD16G1095000.v1.1
prunus_persica	Prupe.1G111300_v2.0.a1 Prupe.1G251600_v2.0.a1 Prupe.8G258200_v2.0.a1
pyrus_communis	pycom13g08160 pycom13g12730 pycom16g08080 pycom16g08090 pycom16g12600
rosa_chinensis	RchiOBHm_Chr4g0426261 RchiOBHm_Chr4g0443671 RchiOBHm_Chr6g0293551
rosa_laevigata	RLG00000005903 RLG00000007308 RLG00000011942
rosa_multiflora	Rmu_co8279911.1_g000001 Rmu_sc0000730.1_g000037 Rmu_sc0001426.1_g000017 Rmu_sc0032866.1_g000001 Rmu_sc0036604.1_g000001
rosa_roxburghii	Rroxscaffold_5G00368270 Rroxscaffold_5G00384220
rosa_rugosa	Rorug04G0209900 Rorug06G0236400
rosa_samantha	Rh4AG266800 Rh4AG406100 Rh4BG272700 Rh4BG417100 Rh4CG286100 Rh4CG286400 Rh4CG431600 Rh4DG269100 Rh4DG269300 Rh4DG412700 Rh6AG349100 Rh6BG356500 Rh6CG363200 Rh6DG350100
rosa_wichuraiana	Rw4G023060 Rw4G023080 Rw4G034870 Rw6G030370

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	696
AccI	GTMKAC	1 cut(s)	222
AciI	CCGC	2 cut(s)	59, 506
AcoI	YGGCCR	3 cut(s)	96, 141, 485
AcuI	CTGAAG	1 cut(s)	158
AcyI	GRCGYC	1 cut(s)	697
AfaI	GTAC	4 cut(s)	30, 467, 635, 671
AfiI	CCNNNNNNNGG	5 cut(s)	112, 136, 292, 475, 682
AflIII	ACRYGT	1 cut(s)	630
AgsI	TTSAA	3 cut(s)	523, 628, 640
AjnI	CCWGG	2 cut(s)	324, 547
AjuI	GAANNNNNNNTTGG	2 cut(s)	371, 403
AluBI	AGCT	2 cut(s)	283, 316
AluI	AGCT	2 cut(s)	283, 316
Alw21I	GWGCWC	1 cut(s)	171
Alw26I	GTCTC	3 cut(s)	9, 192, 572
AoxI	GGCC	5 cut(s)	96, 103, 114, 141, 485
ApeKI	GCWGC	1 cut(s)	749
AspLEI	GCGC	2 cut(s)	207, 699
AspS9I	GGNCC	2 cut(s)	103, 240
AsuHPI	GGTGA	2 cut(s)	353, 583
AvaII	GGWCC	1 cut(s)	240
BalI	TGGCCA	2 cut(s)	98, 487
BanI	GGYRCC	1 cut(s)	696
BanII	GRGCYC	1 cut(s)	503
BarI	GAAGNNNNNNTAC	2 cut(s)	305, 337
BbsI	GAAGAC	1 cut(s)	545
Bbv12I	GWGCWC	1 cut(s)	171
BbvI	GCAGC	1 cut(s)	736
BccI	CCATC	2 cut(s)	323, 394
BceAI	ACGGC	3 cut(s)	128, 380, 397
BciT130I	CCWGG	2 cut(s)	326, 549
BciVI	GTATCC	1 cut(s)	446
BclI	TGATCA	1 cut(s)	358
BcoDI	GTCTC	3 cut(s)	9, 192, 572
BfoI	RGCGCY	1 cut(s)	700
BfuI	GTATCC	1 cut(s)	446
BisI	GCNGC	2 cut(s)	506, 750
BlpI	GCTNAGC	1 cut(s)	612
BlsI	GCNGC	2 cut(s)	507, 751
Bme1390I	CCNGG	2 cut(s)	326, 549
Bme18I	GGWCC	1 cut(s)	240
BmgT120I	GGNCC	2 cut(s)	103, 240
BmiI	GGNNCC	2 cut(s)	242, 698
BmrFI	CCNGG	2 cut(s)	326, 549
BmrI	ACTGGG	1 cut(s)	238
BmuI	ACTGGG	1 cut(s)	238
BpiI	GAAGAC	1 cut(s)	545
BplI	GAGNNNNNCTC	2 cut(s)	418, 450
Bpu1102I	GCTNAGC	1 cut(s)	612
BpuEI	CTTGAG	1 cut(s)	203
BsaAI	YACGTR	1 cut(s)	46
BsaHI	GRCGYC	1 cut(s)	697
BsaI	GGTCTC	1 cut(s)	572
BsaJI	CCNNGG	2 cut(s)	99, 252
BsaWI	WCCGGW	2 cut(s)	237, 664
Bsc4I	CCNNNNNNNGG	5 cut(s)	112, 136, 292, 475, 682
Bse118I	RCCGGY	1 cut(s)	527
Bse1I	ACTGG	2 cut(s)	218, 244
Bse3DI	GCAATG	1 cut(s)	693
BseBI	CCWGG	2 cut(s)	326, 549
BseDI	CCNNGG	2 cut(s)	99, 252
BseGI	GGATG	1 cut(s)	334
BseLI	CCNNNNNNNGG	5 cut(s)	112, 136, 292, 475, 682
BseMI	GCAATG	1 cut(s)	693
BseMII	CTCAG	5 cut(s)	121, 203, 222, 452, 603
BseNI	ACTGG	2 cut(s)	218, 244
BseRI	GAGGAG	1 cut(s)	426
BseXI	GCAGC	1 cut(s)	736
BsgI	GTGCAG	1 cut(s)	500
BshFI	GGCC	5 cut(s)	98, 105, 116, 143, 487
BshNI	GGYRCC	1 cut(s)	696
BsiHKAI	GWGCWC	1 cut(s)	171
BsiSI	CCGG	3 cut(s)	238, 528, 665
BslFI	GGGAC	1 cut(s)	83
BslI	CCNNNNNNNGG	5 cut(s)	112, 136, 292, 475, 682
BsmAI	GTCTC	3 cut(s)	9, 192, 572
BsmFI	GGGAC	1 cut(s)	83
BsnI	GGCC	5 cut(s)	98, 105, 116, 143, 487
Bso31I	GGTCTC	1 cut(s)	572
Bsp1286I	GDGCHC	2 cut(s)	171, 503
Bsp1407I	TGTACA	1 cut(s)	669
Bsp143I	GATC	3 cut(s)	358, 447, 568
Bsp1720I	GCTNAGC	1 cut(s)	612
Bsp19I	CCATGG	1 cut(s)	252
BspACI	CCGC	2 cut(s)	59, 506
BspANI	GGCC	5 cut(s)	98, 105, 116, 143, 487
BspCNI	CTCAG	5 cut(s)	120, 202, 223, 451, 604
BspLI	GGNNCC	2 cut(s)	242, 698
BspQI	GCTCTTC	1 cut(s)	159
BspT107I	GGYRCC	1 cut(s)	696
BspTNI	GGTCTC	1 cut(s)	572
BsrDI	GCAATG	1 cut(s)	693
BsrFI	RCCGGY	1 cut(s)	527
BsrGI	TGTACA	1 cut(s)	669
BsrI	ACTGG	2 cut(s)	218, 244
BssAI	RCCGGY	1 cut(s)	527
BssECI	CCNNGG	2 cut(s)	99, 252
BssMI	GATC	3 cut(s)	358, 447, 568
BssNI	GRCGYC	1 cut(s)	697
BssT1I	CCWWGG	2 cut(s)	99, 252
Bst2UI	CCWGG	2 cut(s)	326, 549
Bst4CI	ACNGT	1 cut(s)	583
Bst6I	CTCTTC	1 cut(s)	159
BstACI	GRCGYC	1 cut(s)	697
BstAUI	TGTACA	1 cut(s)	669
BstBAI	YACGTR	1 cut(s)	46
BstC8I	GCNNGC	5 cut(s)	61, 461, 489, 503, 529
BstDEI	CTNAG	5 cut(s)	107, 189, 231, 438, 612
BstDSI	CCRYGG	1 cut(s)	252
BstENI	CCTNNNNNAGG	1 cut(s)	110
BstF5I	GGATG	1 cut(s)	334
BstH2I	RGCGCY	1 cut(s)	700
BstHHI	GCGC	2 cut(s)	207, 699
BstKTI	GATC	3 cut(s)	361, 450, 571
BstMAI	GTCTC	3 cut(s)	9, 192, 572
BstMBI	GATC	3 cut(s)	358, 447, 568
BstMWI	GCNNNNNNNGC	2 cut(s)	122, 204
BstNI	CCWGG	2 cut(s)	326, 549
BstNSI	RCATGY	3 cut(s)	376, 535, 634
BstSCI	CCNGG	2 cut(s)	324, 547
BstV1I	GCAGC	1 cut(s)	736
BstV2I	GAAGAC	1 cut(s)	545
BsuI	GTATCC	1 cut(s)	446
BsuRI	GGCC	5 cut(s)	98, 105, 116, 143, 487
BtgI	CCRYGG	1 cut(s)	252
BtsCI	GGATG	1 cut(s)	334
BtsI	GCAGTG	1 cut(s)	488
BtsIMutI	CAGTG	1 cut(s)	488
Cac8I	GCNNGC	5 cut(s)	61, 461, 489, 503, 529
CfoI	GCGC	2 cut(s)	207, 699
Cfr10I	RCCGGY	1 cut(s)	527
Cfr13I	GGNCC	2 cut(s)	103, 240
Csp6I	GTAC	4 cut(s)	29, 466, 634, 670
CviAII	CATG	7 cut(s)	253, 373, 423, 496, 532, 566, 631
CviQI	GTAC	4 cut(s)	29, 466, 634, 670
DdeI	CTNAG	5 cut(s)	107, 189, 231, 438, 612
DinI	GGCGCC	1 cut(s)	698
DpnI	GATC	3 cut(s)	360, 449, 570
DpnII	GATC	3 cut(s)	358, 447, 568
EaeI	YGGCCR	3 cut(s)	96, 141, 485
Eam1104I	CTCTTC	1 cut(s)	159
EarI	CTCTTC	1 cut(s)	159
Eco130I	CCWWGG	2 cut(s)	99, 252
Eco24I	GRGCYC	1 cut(s)	503
Eco31I	GGTCTC	1 cut(s)	572
Eco47I	GGWCC	1 cut(s)	240
Eco57I	CTGAAG	1 cut(s)	158
EcoNI	CCTNNNNNAGG	1 cut(s)	110
EcoO109I	RGGNCCY	1 cut(s)	103
EcoRII	CCWGG	2 cut(s)	324, 547
EcoT14I	CCWWGG	2 cut(s)	99, 252
EcoT38I	GRGCYC	1 cut(s)	503
EgeI	GGCGCC	1 cut(s)	698
EheI	GGCGCC	1 cut(s)	698
ErhI	CCWWGG	2 cut(s)	99, 252
FaeI	CATG	7 cut(s)	256, 376, 426, 499, 535, 569, 634
FalI	AAGNNNNNCTT	2 cut(s)	156, 188
FaqI	GGGAC	1 cut(s)	83
FatI	CATG	7 cut(s)	252, 372, 422, 495, 531, 565, 630
FauI	CCCGC	1 cut(s)	52
FbaI	TGATCA	1 cut(s)	358
FblI	GTMKAC	1 cut(s)	222
Fnu4HI	GCNGC	2 cut(s)	506, 750
FokI	GGATG	1 cut(s)	341
FriOI	GRGCYC	1 cut(s)	503
Fsp4HI	GCNGC	2 cut(s)	506, 750
GlaI	GCGC	2 cut(s)	206, 698
GluI	GCNGC	2 cut(s)	506, 750
HaeII	RGCGCY	1 cut(s)	700
HaeIII	GGCC	5 cut(s)	98, 105, 116, 143, 487
HapII	CCGG	3 cut(s)	238, 528, 665
HhaI	GCGC	2 cut(s)	207, 699
Hin1I	GRCGYC	1 cut(s)	697
Hin1II	CATG	7 cut(s)	256, 376, 426, 499, 535, 569, 634
Hin6I	GCGC	2 cut(s)	205, 697
HinP1I	GCGC	2 cut(s)	205, 697
HincII	GTYRAC	1 cut(s)	715
HindII	GTYRAC	1 cut(s)	715
HinfI	GANTC	3 cut(s)	178, 185, 427
HpaII	CCGG	3 cut(s)	238, 528, 665
HphI	GGTGA	2 cut(s)	353, 583
Hpy166II	GTNNAC	3 cut(s)	223, 670, 715
Hpy188I	TCNGA	3 cut(s)	110, 177, 452
Hpy188III	TCNNGA	5 cut(s)	11, 161, 182, 230, 625
Hpy8I	GTNNAC	3 cut(s)	223, 670, 715
HpyAV	CCTTC	4 cut(s)	61, 182, 609, 724
HpyCH4III	ACNGT	1 cut(s)	583
HpyCH4IV	ACGT	1 cut(s)	45
HpyCH4V	TGCA	1 cut(s)	481
HpyF10VI	GCNNNNNNNGC	2 cut(s)	122, 204
HpyF3I	CTNAG	5 cut(s)	107, 189, 231, 438, 612
HpySE526I	ACGT	1 cut(s)	45
Hsp92I	GRCGYC	1 cut(s)	697
Hsp92II	CATG	7 cut(s)	256, 376, 426, 499, 535, 569, 634
HspAI	GCGC	2 cut(s)	205, 697
KasI	GGCGCC	1 cut(s)	696
KroI	GCCGGC	1 cut(s)	527
KroNI	GCCGGC	1 cut(s)	529
Ksp22I	TGATCA	1 cut(s)	358
Kzo9I	GATC	3 cut(s)	358, 447, 568
LguI	GCTCTTC	1 cut(s)	159
LmnI	GCTCC	1 cut(s)	288
Lsp1109I	GCAGC	1 cut(s)	736
MaeII	ACGT	1 cut(s)	45
MaeIII	GTNAC	3 cut(s)	46, 428, 589
MalI	GATC	3 cut(s)	360, 449, 570
MboI	GATC	3 cut(s)	358, 447, 568
MboII	GAAGA	2 cut(s)	176, 545
MhlI	GDGCHC	2 cut(s)	171, 503
MlsI	TGGCCA	2 cut(s)	98, 487
MluNI	TGGCCA	2 cut(s)	98, 487
Mly113I	GGCGCC	1 cut(s)	697
MlyI	GAGTC	2 cut(s)	194, 436
MmeI	TCCRAC	1 cut(s)	581
MnlI	CCTC	6 cut(s)	18, 116, 237, 447, 613, 672
Mox20I	TGGCCA	2 cut(s)	98, 487
MroNI	GCCGGC	1 cut(s)	527
MscI	TGGCCA	2 cut(s)	98, 487
MseI	TTAA	1 cut(s)	444
MslI	CAYNNNNRTG	1 cut(s)	744
Msp20I	TGGCCA	2 cut(s)	98, 487
MspI	CCGG	3 cut(s)	238, 528, 665
MspR9I	CCNGG	2 cut(s)	326, 549
MvaI	CCWGG	2 cut(s)	326, 549
MwoI	GCNNNNNNNGC	2 cut(s)	122, 204
NaeI	GCCGGC	1 cut(s)	529
NarI	GGCGCC	1 cut(s)	697
NcoI	CCATGG	1 cut(s)	252
NdeII	GATC	3 cut(s)	358, 447, 568
NgoMIV	GCCGGC	1 cut(s)	527
NlaIII	CATG	7 cut(s)	256, 376, 426, 499, 535, 569, 634
NlaIV	GGNNCC	2 cut(s)	242, 698
NmuCI	GTSAC	3 cut(s)	46, 428, 589
NspI	RCATGY	3 cut(s)	376, 535, 634
PciI	ACATGT	1 cut(s)	630
PciSI	GCTCTTC	1 cut(s)	159
PdiI	GCCGGC	1 cut(s)	529
PfeI	GAWTC	1 cut(s)	178
PkrI	GCNGC	2 cut(s)	507, 751
PleI	GAGTC	2 cut(s)	193, 435
PluTI	GGCGCC	1 cut(s)	700
PpsI	GAGTC	2 cut(s)	193, 435
Ppu21I	YACGTR	1 cut(s)	46
PscI	ACATGT	1 cut(s)	630
Psp6I	CCWGG	2 cut(s)	324, 547
PspGI	CCWGG	2 cut(s)	324, 547
PspN4I	GGNNCC	2 cut(s)	242, 698
PspPI	GGNCC	2 cut(s)	103, 240
RsaI	GTAC	4 cut(s)	30, 467, 635, 671
RsaNI	GTAC	4 cut(s)	29, 466, 634, 670
RseI	CAYNNNNRTG	1 cut(s)	744
SapI	GCTCTTC	1 cut(s)	159
SaqAI	TTAA	1 cut(s)	444
SatI	GCNGC	2 cut(s)	506, 750
Sau3AI	GATC	3 cut(s)	358, 447, 568
Sau96I	GGNCC	2 cut(s)	103, 240
SchI	GAGTC	2 cut(s)	194, 436
ScrFI	CCNGG	2 cut(s)	326, 549
SduI	GDGCHC	2 cut(s)	171, 503
SfoI	GGCGCC	1 cut(s)	698
SinI	GGWCC	1 cut(s)	240
SmiMI	CAYNNNNRTG	1 cut(s)	744
SmlI	CTYRAG	1 cut(s)	182
SmoI	CTYRAG	1 cut(s)	182
SsiI	CCGC	2 cut(s)	59, 506
SspDI	GGCGCC	1 cut(s)	696
StyD4I	CCNGG	2 cut(s)	324, 547
StyI	CCWWGG	2 cut(s)	99, 252
TaaI	ACNGT	1 cut(s)	583
TaiI	ACGT	1 cut(s)	48
TatI	WGTACW	2 cut(s)	633, 669
TauI	GCSGC	1 cut(s)	508
TfiI	GAWTC	1 cut(s)	178
Tru1I	TTAA	1 cut(s)	444
Tru9I	TTAA	1 cut(s)	444
TscAI	CASTG	1 cut(s)	488
TseFI	GTSAC	3 cut(s)	46, 428, 589
TseI	GCWGC	1 cut(s)	749
Tsp45I	GTSAC	3 cut(s)	46, 428, 589
TspDTI	ATGAA	1 cut(s)	728
TspGWI	ACGGA	2 cut(s)	39, 275
TspRI	CASTG	1 cut(s)	488
VpaK11BI	GGWCC	1 cut(s)	240
XagI	CCTNNNNNAGG	1 cut(s)	110
XceI	RCATGY	3 cut(s)	376, 535, 634
XmiI	GTMKAC	1 cut(s)	222

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.